HEADER RNA BINDING PROTEIN/RNA 11-SEP-11 3TS2 TITLE MOUSE LIN28A IN COMPLEX WITH LET-7G MICRORNA PRE-ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LIN-28 HOMOLOG A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIN-28A, TESTIS-EXPRESSED PROTEIN 17; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(*GP*GP*GP*GP*UP*CP*UP*AP*UP*GP*AP*UP*AP*CP*CP*AP*CP*CP*CP*CP*GP*GP* COMPND 9 AP*G)-3'); COMPND 10 CHAIN: U, V; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PREE-LET-7G SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LIN28, LIN28A, TEX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: RNA OLIGONUCLEOTIDE KEYWDS MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC ZINC KEYWDS 2 KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAM,P.SLIZ REVDAT 4 13-SEP-23 3TS2 1 REMARK SEQADV LINK REVDAT 3 14-DEC-11 3TS2 1 JRNL REVDAT 2 30-NOV-11 3TS2 1 JRNL REVDAT 1 16-NOV-11 3TS2 0 JRNL AUTH Y.NAM,C.CHEN,R.I.GREGORY,J.J.CHOU,P.SLIZ JRNL TITL MOLECULAR BASIS FOR INTERACTION OF LET-7 MICRORNAS WITH JRNL TITL 2 LIN28. JRNL REF CELL(CAMBRIDGE,MASS.) V. 147 1080 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 22078496 JRNL DOI 10.1016/J.CELL.2011.10.020 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 30726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.35 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2902 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2217 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2782 REMARK 3 BIN R VALUE (WORKING SET) : 0.2192 REMARK 3 BIN FREE R VALUE : 0.2824 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 120 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2082 REMARK 3 NUCLEIC ACID ATOMS : 1022 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.78870 REMARK 3 B22 (A**2) : -3.05780 REMARK 3 B33 (A**2) : 6.84660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.281 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.170 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3277 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4640 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1313 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 39 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 368 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3277 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 446 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3587 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.25 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.5729 18.7223 -34.6537 REMARK 3 T TENSOR REMARK 3 T11: -0.1025 T22: -0.0680 REMARK 3 T33: -0.0925 T12: 0.0053 REMARK 3 T13: 0.0162 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 2.5786 L22: 1.2874 REMARK 3 L33: 2.9795 L12: 0.0170 REMARK 3 L13: -0.3470 L23: -0.5377 REMARK 3 S TENSOR REMARK 3 S11: 0.1398 S12: -0.0860 S13: 0.1198 REMARK 3 S21: -0.0126 S22: -0.0168 S23: -0.0192 REMARK 3 S31: -0.0170 S32: 0.1654 S33: -0.1229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.5394 46.0213 -7.5428 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: -0.1077 REMARK 3 T33: -0.1347 T12: -0.0134 REMARK 3 T13: 0.0281 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.3118 L22: 1.8780 REMARK 3 L33: 3.3012 L12: -0.5599 REMARK 3 L13: -0.0033 L23: -0.2764 REMARK 3 S TENSOR REMARK 3 S11: -0.1333 S12: -0.0467 S13: -0.0690 REMARK 3 S21: 0.0564 S22: 0.2810 S23: 0.0970 REMARK 3 S31: 0.3619 S32: -0.0564 S33: -0.1478 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { U|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.8322 22.4333 -11.1584 REMARK 3 T TENSOR REMARK 3 T11: -0.1834 T22: 0.1446 REMARK 3 T33: -0.2206 T12: 0.0930 REMARK 3 T13: 0.1249 T23: -0.1220 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.4476 REMARK 3 L33: 1.1772 L12: -2.6251 REMARK 3 L13: -1.4201 L23: -0.5734 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.5442 S13: 0.0427 REMARK 3 S21: 0.3650 S22: 0.4746 S23: -0.1499 REMARK 3 S31: -0.0062 S32: -0.5442 S33: -0.4444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { V|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.1998 44.5386 -27.3299 REMARK 3 T TENSOR REMARK 3 T11: -0.0145 T22: 0.0109 REMARK 3 T33: -0.1431 T12: -0.0934 REMARK 3 T13: 0.0816 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.6914 L22: 2.4480 REMARK 3 L33: 0.6789 L12: -1.6525 REMARK 3 L13: -2.2225 L23: 0.8741 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: 0.1628 S13: 0.4679 REMARK 3 S21: -0.3009 S22: 0.2237 S23: -0.4958 REMARK 3 S31: 0.0926 S32: 0.0228 S33: -0.1069 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.007 REMARK 200 RESOLUTION RANGE LOW (A) : 42.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 32% W/V PEG 4000, REMARK 280 AND 0.2M SODIUM ACETATE , VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.45500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.45500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.45500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.45500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THE CRYSTAL FORMS, THE AUTHORS OBSERVE A DOMAIN SWAP IN REMARK 300 WHICH THE LIN28 CSD INTERACTS WITH THE LOOP OF ONE MICRORNA REMARK 300 MOLECULE, AND THE CCHCX2 INTERACTS WITH THE GGAG OF A SECOND REMARK 300 MICRORNA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, U, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 7 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 ASP A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 PRO A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 GLN A 185 REMARK 465 GLY A 186 REMARK 465 LYS A 187 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 ASP B 33 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 PRO B 182 REMARK 465 SER B 183 REMARK 465 SER B 184 REMARK 465 GLN B 185 REMARK 465 GLY B 186 REMARK 465 LYS B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U U 5 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 A U 8 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 C U 17 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 C U 18 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 C U 19 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 G U 21 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 G U 22 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 U V 5 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 C V 6 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 C V 18 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 C V 19 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 G V 22 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 178 47.49 -84.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 142 SG 115.0 REMARK 620 3 HIS A 147 NE2 100.0 103.7 REMARK 620 4 CYS A 152 SG 112.7 111.4 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 161 SG REMARK 620 2 CYS A 164 SG 113.5 REMARK 620 3 HIS A 169 NE2 107.4 102.0 REMARK 620 4 CYS A 174 SG 104.4 118.3 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 139 SG REMARK 620 2 CYS B 142 SG 112.6 REMARK 620 3 HIS B 147 NE2 99.8 109.0 REMARK 620 4 CYS B 152 SG 107.1 116.4 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 CYS B 164 SG 114.8 REMARK 620 3 HIS B 169 NE2 104.9 96.4 REMARK 620 4 CYS B 174 SG 109.3 120.8 108.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 DBREF 3TS2 A 31 187 UNP Q8K3Y3 LN28A_MOUSE 31 187 DBREF 3TS2 B 31 187 UNP Q8K3Y3 LN28A_MOUSE 31 187 DBREF 3TS2 U 1 24 PDB 3TS2 3TS2 1 24 DBREF 3TS2 V 1 24 PDB 3TS2 3TS2 1 24 SEQADV 3TS2 A UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS2 A UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS2 A UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS2 A UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS2 A UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS2 A UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS2 A UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS2 A UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS2 A UNP Q8K3Y3 LYS 135 DELETION SEQADV 3TS2 B UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS2 B UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS2 B UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS2 B UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS2 B UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS2 B UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS2 B UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS2 B UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS2 B UNP Q8K3Y3 LYS 135 DELETION SEQRES 1 A 148 ALA ALA ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE SEQRES 2 A 148 CYS LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SEQRES 3 A 148 SER MET THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO SEQRES 4 A 148 VAL ASP VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU SEQRES 5 A 148 GLY PHE ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE SEQRES 6 A 148 THR PHE LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG SEQRES 7 A 148 VAL THR GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU SEQRES 8 A 148 ARG ARG PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY SEQRES 9 A 148 GLY LEU ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO SEQRES 10 A 148 GLN PRO LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS SEQRES 11 A 148 MET VAL ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SEQRES 12 A 148 SER SER GLN GLY LYS SEQRES 1 B 148 ALA ALA ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE SEQRES 2 B 148 CYS LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SEQRES 3 B 148 SER MET THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO SEQRES 4 B 148 VAL ASP VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU SEQRES 5 B 148 GLY PHE ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE SEQRES 6 B 148 THR PHE LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG SEQRES 7 B 148 VAL THR GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU SEQRES 8 B 148 ARG ARG PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY SEQRES 9 B 148 GLY LEU ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO SEQRES 10 B 148 GLN PRO LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS SEQRES 11 B 148 MET VAL ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SEQRES 12 B 148 SER SER GLN GLY LYS SEQRES 1 U 24 GMP G G G U C U A U G A U A SEQRES 2 U 24 C C A C C C C G G A G SEQRES 1 V 24 GMP G G G U C U A U G A U A SEQRES 2 V 24 C C A C C C C G G A G HET GMP U 1 20 HET GMP V 1 20 HET ZN A 1 1 HET ZN A 2 1 HET ZN B 1 1 HET ZN B 2 1 HETNAM GMP GUANOSINE HETNAM ZN ZINC ION FORMUL 3 GMP 2(C10 H13 N5 O5) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *311(H2 O) HELIX 1 1 SER A 77 LEU A 79 5 3 HELIX 2 2 GLY A 111 VAL A 115 5 5 HELIX 3 3 HIS A 148 CYS A 152 5 5 HELIX 4 4 MET A 170 CYS A 174 5 5 HELIX 5 5 SER B 77 LEU B 79 5 3 HELIX 6 6 GLY B 111 VAL B 115 5 5 HELIX 7 7 HIS B 148 CYS B 152 5 5 HELIX 8 8 MET B 170 CYS B 174 5 5 SHEET 1 A 6 LEU A 38 ASN A 48 0 SHEET 2 A 6 PHE A 53 ARG A 61 -1 O SER A 57 N ILE A 43 SHEET 3 A 6 VAL A 64 HIS A 75 -1 O VAL A 70 N MET A 58 SHEET 4 A 6 GLY A 103 THR A 110 1 O LEU A 104 N PHE A 73 SHEET 5 A 6 ALA A 92 SER A 100 -1 N SER A 100 O GLY A 103 SHEET 6 A 6 LEU A 38 ASN A 48 -1 N GLY A 42 O VAL A 93 SHEET 1 B 6 LEU B 38 ASN B 48 0 SHEET 2 B 6 PHE B 53 ARG B 61 -1 O SER B 57 N ILE B 43 SHEET 3 B 6 VAL B 64 HIS B 75 -1 O VAL B 70 N MET B 58 SHEET 4 B 6 GLY B 103 THR B 110 1 O LEU B 104 N PHE B 73 SHEET 5 B 6 ALA B 92 SER B 100 -1 N SER B 100 O GLY B 103 SHEET 6 B 6 LEU B 38 ASN B 48 -1 N GLY B 42 O VAL B 93 LINK ZN ZN A 1 SG CYS A 139 1555 1555 2.29 LINK ZN ZN A 1 SG CYS A 142 1555 1555 2.26 LINK ZN ZN A 1 NE2 HIS A 147 1555 1555 2.09 LINK ZN ZN A 1 SG CYS A 152 1555 1555 2.30 LINK ZN ZN A 2 SG CYS A 161 1555 1555 2.34 LINK ZN ZN A 2 SG CYS A 164 1555 1555 2.28 LINK ZN ZN A 2 NE2 HIS A 169 1555 1555 2.05 LINK ZN ZN A 2 SG CYS A 174 1555 1555 2.34 LINK ZN ZN B 1 SG CYS B 139 1555 1555 2.39 LINK ZN ZN B 1 SG CYS B 142 1555 1555 2.24 LINK ZN ZN B 1 NE2 HIS B 147 1555 1555 2.10 LINK ZN ZN B 1 SG CYS B 152 1555 1555 2.32 LINK ZN ZN B 2 SG CYS B 161 1555 1555 2.25 LINK ZN ZN B 2 SG CYS B 164 1555 1555 2.36 LINK ZN ZN B 2 NE2 HIS B 169 1555 1555 2.20 LINK ZN ZN B 2 SG CYS B 174 1555 1555 2.26 CISPEP 1 ASP A 67 PRO A 68 0 5.43 CISPEP 2 ASP B 67 PRO B 68 0 3.36 SITE 1 AC1 4 CYS A 139 CYS A 142 HIS A 147 CYS A 152 SITE 1 AC2 4 CYS A 161 CYS A 164 HIS A 169 CYS A 174 SITE 1 AC3 4 CYS B 139 CYS B 142 HIS B 147 CYS B 152 SITE 1 AC4 4 CYS B 161 CYS B 164 HIS B 169 CYS B 174 CRYST1 46.030 109.210 182.910 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005467 0.00000 CONECT 725 3109 CONECT 751 3109 CONECT 785 3109 CONECT 824 3109 CONECT 895 3110 CONECT 922 3110 CONECT 963 3110 CONECT 995 3110 CONECT 1775 3111 CONECT 1801 3111 CONECT 1835 3111 CONECT 1874 3111 CONECT 1945 3112 CONECT 1972 3112 CONECT 2013 3112 CONECT 2045 3112 CONECT 2085 2086 CONECT 2086 2085 2087 CONECT 2087 2086 2088 2089 CONECT 2088 2087 2093 CONECT 2089 2087 2090 2091 CONECT 2090 2089 CONECT 2091 2089 2092 2093 CONECT 2092 2091 CONECT 2093 2088 2091 2094 CONECT 2094 2093 2095 2104 CONECT 2095 2094 2096 CONECT 2096 2095 2097 CONECT 2097 2096 2098 2104 CONECT 2098 2097 2099 2100 CONECT 2099 2098 CONECT 2100 2098 2101 CONECT 2101 2100 2102 2103 CONECT 2102 2101 CONECT 2103 2101 2104 CONECT 2104 2094 2097 2103 CONECT 2597 2598 CONECT 2598 2597 2599 CONECT 2599 2598 2600 2601 CONECT 2600 2599 2605 CONECT 2601 2599 2602 2603 CONECT 2602 2601 CONECT 2603 2601 2604 2605 CONECT 2604 2603 CONECT 2605 2600 2603 2606 CONECT 2606 2605 2607 2616 CONECT 2607 2606 2608 CONECT 2608 2607 2609 CONECT 2609 2608 2610 2616 CONECT 2610 2609 2611 2612 CONECT 2611 2610 CONECT 2612 2610 2613 CONECT 2613 2612 2614 2615 CONECT 2614 2613 CONECT 2615 2613 2616 CONECT 2616 2606 2609 2615 CONECT 3109 725 751 785 824 CONECT 3110 895 922 963 995 CONECT 3111 1775 1801 1835 1874 CONECT 3112 1945 1972 2013 2045 MASTER 444 0 6 8 12 0 4 6 3419 4 60 28 END