HEADER RNA BINDING PROTEIN/RNA 11-SEP-11 3TS2 TITLE MOUSE LIN28A IN COMPLEX WITH LET-7G MICRORNA PRE-ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LIN-28 HOMOLOG A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIN-28A, TESTIS-EXPRESSED PROTEIN 17; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(*GP*GP*GP*GP*UP*CP*UP*AP*UP*GP*AP*UP*AP*CP*CP*AP*CP*CP*CP*CP*GP*GP* COMPND 9 AP*G)-3'); COMPND 10 CHAIN: U, V; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PREE-LET-7G SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LIN28, LIN28A, TEX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: RNA OLIGONUCLEOTIDE KEYWDS MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC ZINC KEYWDS 2 KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAM,P.SLIZ REVDAT 4 13-SEP-23 3TS2 1 REMARK SEQADV LINK REVDAT 3 14-DEC-11 3TS2 1 JRNL REVDAT 2 30-NOV-11 3TS2 1 JRNL REVDAT 1 16-NOV-11 3TS2 0 JRNL AUTH Y.NAM,C.CHEN,R.I.GREGORY,J.J.CHOU,P.SLIZ JRNL TITL MOLECULAR BASIS FOR INTERACTION OF LET-7 MICRORNAS WITH JRNL TITL 2 LIN28. JRNL REF CELL(CAMBRIDGE,MASS.) V. 147 1080 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 22078496 JRNL DOI 10.1016/J.CELL.2011.10.020 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 30726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.35 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2902 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2217 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2782 REMARK 3 BIN R VALUE (WORKING SET) : 0.2192 REMARK 3 BIN FREE R VALUE : 0.2824 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 120 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2082 REMARK 3 NUCLEIC ACID ATOMS : 1022 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.78870 REMARK 3 B22 (A**2) : -3.05780 REMARK 3 B33 (A**2) : 6.84660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.281 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.170 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3277 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4640 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1313 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 39 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 368 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3277 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 446 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3587 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.25 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.5729 18.7223 -34.6537 REMARK 3 T TENSOR REMARK 3 T11: -0.1025 T22: -0.0680 REMARK 3 T33: -0.0925 T12: 0.0053 REMARK 3 T13: 0.0162 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 2.5786 L22: 1.2874 REMARK 3 L33: 2.9795 L12: 0.0170 REMARK 3 L13: -0.3470 L23: -0.5377 REMARK 3 S TENSOR REMARK 3 S11: 0.1398 S12: -0.0860 S13: 0.1198 REMARK 3 S21: -0.0126 S22: -0.0168 S23: -0.0192 REMARK 3 S31: -0.0170 S32: 0.1654 S33: -0.1229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.5394 46.0213 -7.5428 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: -0.1077 REMARK 3 T33: -0.1347 T12: -0.0134 REMARK 3 T13: 0.0281 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.3118 L22: 1.8780 REMARK 3 L33: 3.3012 L12: -0.5599 REMARK 3 L13: -0.0033 L23: -0.2764 REMARK 3 S TENSOR REMARK 3 S11: -0.1333 S12: -0.0467 S13: -0.0690 REMARK 3 S21: 0.0564 S22: 0.2810 S23: 0.0970 REMARK 3 S31: 0.3619 S32: -0.0564 S33: -0.1478 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { U|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.8322 22.4333 -11.1584 REMARK 3 T TENSOR REMARK 3 T11: -0.1834 T22: 0.1446 REMARK 3 T33: -0.2206 T12: 0.0930 REMARK 3 T13: 0.1249 T23: -0.1220 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.4476 REMARK 3 L33: 1.1772 L12: -2.6251 REMARK 3 L13: -1.4201 L23: -0.5734 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.5442 S13: 0.0427 REMARK 3 S21: 0.3650 S22: 0.4746 S23: -0.1499 REMARK 3 S31: -0.0062 S32: -0.5442 S33: -0.4444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { V|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.1998 44.5386 -27.3299 REMARK 3 T TENSOR REMARK 3 T11: -0.0145 T22: 0.0109 REMARK 3 T33: -0.1431 T12: -0.0934 REMARK 3 T13: 0.0816 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.6914 L22: 2.4480 REMARK 3 L33: 0.6789 L12: -1.6525 REMARK 3 L13: -2.2225 L23: 0.8741 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: 0.1628 S13: 0.4679 REMARK 3 S21: -0.3009 S22: 0.2237 S23: -0.4958 REMARK 3 S31: 0.0926 S32: 0.0228 S33: -0.1069 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.007 REMARK 200 RESOLUTION RANGE LOW (A) : 42.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 32% W/V PEG 4000, REMARK 280 AND 0.2M SODIUM ACETATE , VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.45500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.45500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.45500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.45500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THE CRYSTAL FORMS, THE AUTHORS OBSERVE A DOMAIN SWAP IN REMARK 300 WHICH THE LIN28 CSD INTERACTS WITH THE LOOP OF ONE MICRORNA REMARK 300 MOLECULE, AND THE CCHCX2 INTERACTS WITH THE GGAG OF A SECOND REMARK 300 MICRORNA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, U, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 7 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 ASP A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 PRO A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 GLN A 185 REMARK 465 GLY A 186 REMARK 465 LYS A 187 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 ASP B 33 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 PRO B 182 REMARK 465 SER B 183 REMARK 465 SER B 184 REMARK 465 GLN B 185 REMARK 465 GLY B 186 REMARK 465 LYS B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U U 5 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 A U 8 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 C U 17 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 C U 18 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 C U 19 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 G U 21 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 G U 22 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 U V 5 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 C V 6 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 C V 18 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 C V 19 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 G V 22 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 178 47.49 -84.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 142 SG 115.0 REMARK 620 3 HIS A 147 NE2 100.0 103.7 REMARK 620 4 CYS A 152 SG 112.7 111.4 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 161 SG REMARK 620 2 CYS A 164 SG 113.5 REMARK 620 3 HIS A 169 NE2 107.4 102.0 REMARK 620 4 CYS A 174 SG 104.4 118.3 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 139 SG REMARK 620 2 CYS B 142 SG 112.6 REMARK 620 3 HIS B 147 NE2 99.8 109.0 REMARK 620 4 CYS B 152 SG 107.1 116.4 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 CYS B 164 SG 114.8 REMARK 620 3 HIS B 169 NE2 104.9 96.4 REMARK 620 4 CYS B 174 SG 109.3 120.8 108.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 DBREF 3TS2 A 31 187 UNP Q8K3Y3 LN28A_MOUSE 31 187 DBREF 3TS2 B 31 187 UNP Q8K3Y3 LN28A_MOUSE 31 187 DBREF 3TS2 U 1 24 PDB 3TS2 3TS2 1 24 DBREF 3TS2 V 1 24 PDB 3TS2 3TS2 1 24 SEQADV 3TS2 A UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS2 A UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS2 A UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS2 A UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS2 A UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS2 A UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS2 A UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS2 A UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS2 A UNP Q8K3Y3 LYS 135 DELETION SEQADV 3TS2 B UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS2 B UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS2 B UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS2 B UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS2 B UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS2 B UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS2 B UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS2 B UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS2 B UNP Q8K3Y3 LYS 135 DELETION SEQRES 1 A 148 ALA ALA ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE SEQRES 2 A 148 CYS LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SEQRES 3 A 148 SER MET THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO SEQRES 4 A 148 VAL ASP VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU SEQRES 5 A 148 GLY PHE ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE SEQRES 6 A 148 THR PHE LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG SEQRES 7 A 148 VAL THR GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU SEQRES 8 A 148 ARG ARG PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY SEQRES 9 A 148 GLY LEU ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO SEQRES 10 A 148 GLN PRO LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS SEQRES 11 A 148 MET VAL ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SEQRES 12 A 148 SER SER GLN GLY LYS SEQRES 1 B 148 ALA ALA ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE SEQRES 2 B 148 CYS LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SEQRES 3 B 148 SER MET THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO SEQRES 4 B 148 VAL ASP VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU SEQRES 5 B 148 GLY PHE ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE SEQRES 6 B 148 THR PHE LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG SEQRES 7 B 148 VAL THR GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU SEQRES 8 B 148 ARG ARG PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY SEQRES 9 B 148 GLY LEU ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO SEQRES 10 B 148 GLN PRO LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS SEQRES 11 B 148 MET VAL ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SEQRES 12 B 148 SER SER GLN GLY LYS SEQRES 1 U 24 GMP G G G U C U A U G A U A SEQRES 2 U 24 C C A C C C C G G A G SEQRES 1 V 24 GMP G G G U C U A U G A U A SEQRES 2 V 24 C C A C C C C G G A G HET GMP U 1 20 HET GMP V 1 20 HET ZN A 1 1 HET ZN A 2 1 HET ZN B 1 1 HET ZN B 2 1 HETNAM GMP GUANOSINE HETNAM ZN ZINC ION FORMUL 3 GMP 2(C10 H13 N5 O5) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *311(H2 O) HELIX 1 1 SER A 77 LEU A 79 5 3 HELIX 2 2 GLY A 111 VAL A 115 5 5 HELIX 3 3 HIS A 148 CYS A 152 5 5 HELIX 4 4 MET A 170 CYS A 174 5 5 HELIX 5 5 SER B 77 LEU B 79 5 3 HELIX 6 6 GLY B 111 VAL B 115 5 5 HELIX 7 7 HIS B 148 CYS B 152 5 5 HELIX 8 8 MET B 170 CYS B 174 5 5 SHEET 1 A 6 LEU A 38 ASN A 48 0 SHEET 2 A 6 PHE A 53 ARG A 61 -1 O SER A 57 N ILE A 43 SHEET 3 A 6 VAL A 64 HIS A 75 -1 O VAL A 70 N MET A 58 SHEET 4 A 6 GLY A 103 THR A 110 1 O LEU A 104 N PHE A 73 SHEET 5 A 6 ALA A 92 SER A 100 -1 N SER A 100 O GLY A 103 SHEET 6 A 6 LEU A 38 ASN A 48 -1 N GLY A 42 O VAL A 93 SHEET 1 B 6 LEU B 38 ASN B 48 0 SHEET 2 B 6 PHE B 53 ARG B 61 -1 O SER B 57 N ILE B 43 SHEET 3 B 6 VAL B 64 HIS B 75 -1 O VAL B 70 N MET B 58 SHEET 4 B 6 GLY B 103 THR B 110 1 O LEU B 104 N PHE B 73 SHEET 5 B 6 ALA B 92 SER B 100 -1 N SER B 100 O GLY B 103 SHEET 6 B 6 LEU B 38 ASN B 48 -1 N GLY B 42 O VAL B 93 LINK ZN ZN A 1 SG CYS A 139 1555 1555 2.29 LINK ZN ZN A 1 SG CYS A 142 1555 1555 2.26 LINK ZN ZN A 1 NE2 HIS A 147 1555 1555 2.09 LINK ZN ZN A 1 SG CYS A 152 1555 1555 2.30 LINK ZN ZN A 2 SG CYS A 161 1555 1555 2.34 LINK ZN ZN A 2 SG CYS A 164 1555 1555 2.28 LINK ZN ZN A 2 NE2 HIS A 169 1555 1555 2.05 LINK ZN ZN A 2 SG CYS A 174 1555 1555 2.34 LINK ZN ZN B 1 SG CYS B 139 1555 1555 2.39 LINK ZN ZN B 1 SG CYS B 142 1555 1555 2.24 LINK ZN ZN B 1 NE2 HIS B 147 1555 1555 2.10 LINK ZN ZN B 1 SG CYS B 152 1555 1555 2.32 LINK ZN ZN B 2 SG CYS B 161 1555 1555 2.25 LINK ZN ZN B 2 SG CYS B 164 1555 1555 2.36 LINK ZN ZN B 2 NE2 HIS B 169 1555 1555 2.20 LINK ZN ZN B 2 SG CYS B 174 1555 1555 2.26 CISPEP 1 ASP A 67 PRO A 68 0 5.43 CISPEP 2 ASP B 67 PRO B 68 0 3.36 SITE 1 AC1 4 CYS A 139 CYS A 142 HIS A 147 CYS A 152 SITE 1 AC2 4 CYS A 161 CYS A 164 HIS A 169 CYS A 174 SITE 1 AC3 4 CYS B 139 CYS B 142 HIS B 147 CYS B 152 SITE 1 AC4 4 CYS B 161 CYS B 164 HIS B 169 CYS B 174 CRYST1 46.030 109.210 182.910 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005467 0.00000