HEADER ALLERGEN, OXIDOREDUCTASE 13-SEP-11 3TSH TITLE CRYSTAL STRUCTURE OF PHL P 4, A GRASS POLLEN ALLERGEN WITH GLUCOSE TITLE 2 DEHYDROGENASE ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLLEN ALLERGEN PHL P 4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHLEUM PRATENSE; SOURCE 3 ORGANISM_COMMON: TIMOTHY; SOURCE 4 ORGANISM_TAXID: 15957; SOURCE 5 GENE: PHLP4; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AOX1-PROMOTER CONTAINING VECTOR SOURCE 9 VECTOR KEYWDS FLAVOPROTEIN, BI-COVALENT FLAVINYLATION, OXIDOREDUCTASE, GLUCOSE KEYWDS 2 DEHYDROGENASE, N-GLYCOSYLATION, ALLERGY, POLLEN, ALLERGEN, KEYWDS 3 DEHYDROGENASE, GRASS POLLEN EXPDTA X-RAY DIFFRACTION AUTHOR D.ZAFRED,A.NANDY,W.KELLER REVDAT 3 13-SEP-23 3TSH 1 REMARK SEQADV LINK REVDAT 2 21-JUN-17 3TSH 1 JRNL REVDAT 1 19-SEP-12 3TSH 0 JRNL AUTH D.ZAFRED,A.NANDY,L.PUMP,H.KAHLERT,W.KELLER JRNL TITL CRYSTAL STRUCTURE AND IMMUNOLOGIC CHARACTERIZATION OF THE JRNL TITL 2 MAJOR GRASS POLLEN ALLERGEN PHL P 4. JRNL REF J. ALLERGY CLIN. IMMUNOL. V. 132 696 2013 JRNL REFN ESSN 1097-6825 JRNL PMID 23683465 JRNL DOI 10.1016/J.JACI.2013.03.021 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4437 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -1.34000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4124 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5628 ; 1.513 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 6.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;38.718 ;23.678 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 666 ;13.084 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.530 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3166 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 0.836 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4042 ; 1.439 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 2.282 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1574 ; 3.527 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS (DCCM) IN (+ REMARK 200 --+) GEOMETRY, AND A TOROIDAL REMARK 200 MIRROR (M2) TO VERTICALLY AND REMARK 200 HORIZONTALLY FOCUS THE BEAM AT REMARK 200 THE SAMPLE POSITION (WITH 2:1 REMARK 200 HORIZONTAL DEMAGNIFICATION) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64954 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : 0.38100 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: PDB ENTRY 3FW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM MALONATE PH 7.0, 0.1 M REMARK 280 HEPES PH 7.0, 0.5% V/V JEFFAMINE ED-2001(R) PH 7.0 , VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.36333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.72667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.04500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 168.40833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.68167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.36333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.72667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 168.40833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.04500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.68167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 499 REMARK 465 TYR A 500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 83 -82.97 -105.60 REMARK 500 TYR A 93 -4.51 -144.28 REMARK 500 ARG A 110 21.43 -142.05 REMARK 500 ALA A 147 -158.56 -127.40 REMARK 500 GLU A 210 -55.10 73.02 REMARK 500 GLN A 267 41.24 -146.00 REMARK 500 PHE A 292 56.25 -145.50 REMARK 500 ALA A 321 58.89 -146.95 REMARK 500 TYR A 374 -134.68 -100.76 REMARK 500 ALA A 376 -136.37 45.80 REMARK 500 ARG A 391 -103.59 -133.60 REMARK 500 LYS A 468 -125.03 48.23 REMARK 500 LYS A 468 -125.04 48.25 REMARK 500 ASP A 482 60.97 -160.57 REMARK 500 GLN A 491 51.47 -142.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 OE2 REMARK 620 2 GLU A 338 OE1 179.3 REMARK 620 3 HOH A 717 O 99.6 79.9 REMARK 620 4 HOH A 718 O 81.4 98.1 91.7 REMARK 620 5 HOH A 719 O 90.8 89.6 72.9 161.3 REMARK 620 6 HOH A 720 O 93.2 87.3 167.2 91.5 105.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 430 O REMARK 620 2 FMT A 603 O1 95.5 REMARK 620 3 FMT A 603 O2 151.8 56.6 REMARK 620 4 HOH A 721 O 87.1 95.0 98.1 REMARK 620 5 HOH A 722 O 83.5 96.1 95.1 166.0 REMARK 620 6 HOH A 723 O 94.5 170.1 113.5 85.7 84.8 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 605 DBREF 3TSH A 1 500 UNP Q5ZQK4 Q5ZQK4_PHLPR 9 508 SEQADV 3TSH GLN A 61 UNP Q5ZQK4 ASN 69 ENGINEERED MUTATION SEQADV 3TSH GLN A 330 UNP Q5ZQK4 ASN 338 ENGINEERED MUTATION SEQRES 1 A 500 TYR PHE PRO PRO PRO ALA ALA LYS GLU ASP PHE LEU GLY SEQRES 2 A 500 CYS LEU VAL LYS GLU ILE PRO PRO ARG LEU LEU TYR ALA SEQRES 3 A 500 LYS SER SER PRO ALA TYR PRO SER VAL LEU GLY GLN THR SEQRES 4 A 500 ILE ARG ASN SER ARG TRP SER SER PRO ASP ASN VAL LYS SEQRES 5 A 500 PRO LEU TYR ILE ILE THR PRO THR GLN VAL SER HIS ILE SEQRES 6 A 500 GLN SER ALA VAL VAL CYS GLY ARG ARG HIS SER VAL ARG SEQRES 7 A 500 ILE ARG VAL ARG SER GLY GLY HIS ASP TYR GLU GLY LEU SEQRES 8 A 500 SER TYR ARG SER LEU GLN PRO GLU THR PHE ALA VAL VAL SEQRES 9 A 500 ASP LEU ASN LYS MET ARG ALA VAL TRP VAL ASP GLY LYS SEQRES 10 A 500 ALA ARG THR ALA TRP VAL ASP SER GLY ALA GLN LEU GLY SEQRES 11 A 500 GLU LEU TYR TYR ALA ILE TYR LYS ALA SER PRO THR LEU SEQRES 12 A 500 ALA PHE PRO ALA GLY VAL CYS PRO THR ILE GLY VAL GLY SEQRES 13 A 500 GLY ASN PHE ALA GLY GLY GLY PHE GLY MET LEU LEU ARG SEQRES 14 A 500 LYS TYR GLY ILE ALA ALA GLU ASN VAL ILE ASP VAL LYS SEQRES 15 A 500 LEU VAL ASP ALA ASN GLY LYS LEU HIS ASP LYS LYS SER SEQRES 16 A 500 MET GLY ASP ASP HIS PHE TRP ALA VAL ARG GLY GLY GLY SEQRES 17 A 500 GLY GLU SER PHE GLY ILE VAL VAL ALA TRP GLN VAL LYS SEQRES 18 A 500 LEU LEU PRO VAL PRO PRO THR VAL THR ILE PHE LYS ILE SEQRES 19 A 500 SER LYS THR VAL SER GLU GLY ALA VAL ASP ILE ILE ASN SEQRES 20 A 500 LYS TRP GLN VAL VAL ALA PRO GLN LEU PRO ALA ASP LEU SEQRES 21 A 500 MET ILE ARG ILE ILE ALA GLN GLY PRO LYS ALA THR PHE SEQRES 22 A 500 GLU ALA MET TYR LEU GLY THR CYS LYS THR LEU THR PRO SEQRES 23 A 500 LEU MET SER SER LYS PHE PRO GLU LEU GLY MET ASN PRO SEQRES 24 A 500 SER HIS CYS ASN GLU MET SER TRP ILE GLN SER ILE PRO SEQRES 25 A 500 PHE VAL HIS LEU GLY HIS ARG ASP ALA LEU GLU ASP ASP SEQRES 26 A 500 LEU LEU ASN ARG GLN ASN SER PHE LYS PRO PHE ALA GLU SEQRES 27 A 500 TYR LYS SER ASP TYR VAL TYR GLN PRO PHE PRO LYS THR SEQRES 28 A 500 VAL TRP GLU GLN ILE LEU ASN THR TRP LEU VAL LYS PRO SEQRES 29 A 500 GLY ALA GLY ILE MET ILE PHE ASP PRO TYR GLY ALA THR SEQRES 30 A 500 ILE SER ALA THR PRO GLU SER ALA THR PRO PHE PRO HIS SEQRES 31 A 500 ARG LYS GLY VAL LEU PHE ASN ILE GLN TYR VAL ASN TYR SEQRES 32 A 500 TRP PHE ALA PRO GLY ALA ALA ALA ALA PRO LEU SER TRP SEQRES 33 A 500 SER LYS ASP ILE TYR ASN TYR MET GLU PRO TYR VAL SER SEQRES 34 A 500 LYS ASN PRO ARG GLN ALA TYR ALA ASN TYR ARG ASP ILE SEQRES 35 A 500 ASP LEU GLY ARG ASN GLU VAL VAL ASN ASP VAL SER THR SEQRES 36 A 500 TYR ALA SER GLY LYS VAL TRP GLY GLN LYS TYR PHE LYS SEQRES 37 A 500 GLY ASN PHE GLU ARG LEU ALA ILE THR LYS GLY LYS VAL SEQRES 38 A 500 ASP PRO THR ASP TYR PHE ARG ASN GLU GLN SER ILE PRO SEQRES 39 A 500 PRO LEU ILE LYS LYS TYR HET FDA A 601 53 HET NA A 602 1 HET FMT A 603 3 HET NA A 604 1 HET MLI A 605 7 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID HETNAM MLI MALONATE ION FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 NA 2(NA 1+) FORMUL 4 FMT C H2 O2 FORMUL 6 MLI C3 H2 O4 2- FORMUL 7 HOH *528(H2 O) HELIX 1 1 GLU A 9 ILE A 19 1 11 HELIX 2 2 ALA A 31 GLN A 38 1 8 HELIX 3 3 VAL A 62 HIS A 75 1 14 HELIX 4 4 GLN A 128 SER A 140 1 13 HELIX 5 5 GLY A 154 GLY A 161 1 8 HELIX 6 6 LEU A 167 GLY A 172 1 6 HELIX 7 7 ASP A 192 MET A 196 1 5 HELIX 8 8 ASP A 198 ARG A 205 1 8 HELIX 9 9 GLY A 241 LEU A 256 1 16 HELIX 10 10 THR A 280 PHE A 292 1 13 HELIX 11 11 ASN A 298 CYS A 302 5 5 HELIX 12 12 SER A 306 GLY A 317 1 12 HELIX 13 13 ALA A 321 ASN A 328 1 8 HELIX 14 14 PRO A 349 LYS A 363 1 15 HELIX 15 15 ALA A 376 THR A 381 1 6 HELIX 16 16 ALA A 410 TYR A 427 1 18 HELIX 17 17 ASP A 441 GLY A 445 5 5 HELIX 18 18 THR A 455 LYS A 468 1 14 HELIX 19 19 ASN A 470 ASP A 482 1 13 SHEET 1 A 4 LEU A 24 ALA A 26 0 SHEET 2 A 4 TYR A 55 ILE A 57 -1 O ILE A 56 N TYR A 25 SHEET 3 A 4 PHE A 101 ASP A 105 1 O VAL A 103 N ILE A 57 SHEET 4 A 4 ARG A 78 ARG A 82 1 N ARG A 82 O VAL A 104 SHEET 1 B 5 VAL A 112 ASP A 115 0 SHEET 2 B 5 THR A 120 ASP A 124 -1 O THR A 120 N ASP A 115 SHEET 3 B 5 ILE A 214 LYS A 221 -1 O TRP A 218 N VAL A 123 SHEET 4 B 5 VAL A 178 VAL A 184 -1 N ASP A 180 O GLN A 219 SHEET 5 B 5 LEU A 190 HIS A 191 -1 O HIS A 191 N LEU A 183 SHEET 1 C 2 LEU A 143 ALA A 144 0 SHEET 2 C 2 LEU A 223 PRO A 224 -1 O LEU A 223 N ALA A 144 SHEET 1 D 7 ASN A 303 MET A 305 0 SHEET 2 D 7 VAL A 229 THR A 237 -1 N VAL A 229 O MET A 305 SHEET 3 D 7 LYS A 270 TYR A 277 -1 O PHE A 273 N ILE A 234 SHEET 4 D 7 LEU A 260 ALA A 266 -1 N ILE A 265 O THR A 272 SHEET 5 D 7 ILE A 368 PRO A 373 -1 O PHE A 371 N ILE A 264 SHEET 6 D 7 PHE A 396 TRP A 404 -1 O VAL A 401 N ILE A 368 SHEET 7 D 7 PHE A 336 VAL A 344 -1 N PHE A 336 O TRP A 404 SHEET 1 E 2 VAL A 449 VAL A 450 0 SHEET 2 E 2 VAL A 453 SER A 454 -1 O VAL A 453 N VAL A 450 SSBOND 1 CYS A 14 CYS A 71 1555 1555 2.10 SSBOND 2 CYS A 281 CYS A 302 1555 1555 2.10 LINK ND1 HIS A 86 C8M FDA A 601 1555 1555 1.49 LINK SG CYS A 150 C6 FDA A 601 1555 1555 1.81 LINK OE2 GLU A 89 NA NA A 602 1555 1555 2.33 LINK OE1 GLU A 338 NA NA A 602 1555 1555 2.28 LINK O LYS A 430 NA NA A 604 1555 1555 2.23 LINK NA NA A 602 O HOH A 717 1555 1555 2.50 LINK NA NA A 602 O HOH A 718 1555 1555 2.49 LINK NA NA A 602 O HOH A 719 1555 1555 2.33 LINK NA NA A 602 O HOH A 720 1555 1555 2.42 LINK O1 FMT A 603 NA NA A 604 1555 1555 2.27 LINK O2 FMT A 603 NA NA A 604 1555 1555 2.43 LINK NA NA A 604 O HOH A 721 1555 1555 2.42 LINK NA NA A 604 O HOH A 722 1555 1555 2.38 LINK NA NA A 604 O HOH A 723 1555 1555 2.46 CISPEP 1 ASN A 431 PRO A 432 0 2.38 SITE 1 AC1 32 VAL A 81 ARG A 82 SER A 83 GLY A 84 SITE 2 AC1 32 GLY A 85 HIS A 86 ASP A 87 TYR A 88 SITE 3 AC1 32 SER A 92 LEU A 106 SER A 125 GLY A 148 SITE 4 AC1 32 VAL A 149 CYS A 150 ILE A 153 GLY A 154 SITE 5 AC1 32 GLY A 157 ASN A 158 GLY A 163 PHE A 164 SITE 6 AC1 32 GLY A 209 GLU A 210 GLY A 213 VAL A 215 SITE 7 AC1 32 TYR A 436 ASN A 438 ARG A 440 ASN A 489 SITE 8 AC1 32 HOH A 801 HOH A 829 HOH A 842 HOH A1227 SITE 1 AC2 6 GLU A 89 GLU A 338 HOH A 717 HOH A 718 SITE 2 AC2 6 HOH A 719 HOH A 720 SITE 1 AC3 4 SER A 429 LYS A 430 NA A 604 HOH A1165 SITE 1 AC4 5 LYS A 430 FMT A 603 HOH A 721 HOH A 722 SITE 2 AC4 5 HOH A 723 SITE 1 AC5 9 PRO A 382 LYS A 392 TYR A 456 LYS A 460 SITE 2 AC5 9 HOH A 759 HOH A 761 HOH A 946 HOH A1025 SITE 3 AC5 9 HOH A1192 CRYST1 117.077 117.077 202.090 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008541 0.004931 0.000000 0.00000 SCALE2 0.000000 0.009863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004948 0.00000