HEADER HYDROLASE/HYDROLASE INHIBITOR 15-SEP-11 3TTP TITLE STRUCTURE OF MULTIRESISTANT HIV-1 PROTEASE IN COMPLEX WITH DARUNAVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.23.16; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11686; SOURCE 5 STRAIN: GROUP M SUBTYPE B ISOLATE BRU/LAI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS HYDROLASE, VIRAL PRATICLE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.G.SASKOVA,J.BRYNDA,M.KOZISEK,J.KONVALINKA,P.REZACOVA REVDAT 5 29-NOV-23 3TTP 1 REMARK HETSYN REVDAT 4 26-FEB-20 3TTP 1 REMARK SEQADV REVDAT 3 11-JUN-14 3TTP 1 JRNL REVDAT 2 16-APR-14 3TTP 1 JRNL REVDAT 1 26-SEP-12 3TTP 0 JRNL AUTH M.KOZISEK,M.LEPSIK,K.GRANTZ SASKOVA,J.BRYNDA,J.KONVALINKA, JRNL AUTH 2 P.REZACOVA JRNL TITL THERMODYNAMIC AND STRUCTURAL ANALYSIS OF HIV PROTEASE JRNL TITL 2 RESISTANCE TO DARUNAVIR - ANALYSIS OF HEAVILY MUTATED JRNL TITL 3 PATIENT-DERIVED HIV-1 PROTEASES. JRNL REF FEBS J. V. 281 1834 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24785545 JRNL DOI 10.1111/FEBS.12743 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1665 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2276 ; 1.594 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 7.318 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;38.221 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;14.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1209 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 745 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1111 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.078 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1020 ; 0.572 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1626 ; 0.921 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 725 ; 1.372 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 646 ; 2.020 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 99 2 REMARK 3 1 A 1 A 99 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 395 ; 0.06 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 B (A): 362 ; 0.22 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 395 ; 0.34 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 362 ; 0.47 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 201 B 201 2 REMARK 3 1 A 201 A 201 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 38 ; 0.05 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 38 ; 0.40 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 RESIDUE RANGE : A 86 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8010 27.0240 25.9060 REMARK 3 T TENSOR REMARK 3 T11: -0.1139 T22: -0.1218 REMARK 3 T33: 0.0360 T12: 0.0860 REMARK 3 T13: 0.0320 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 3.6381 L22: 3.0971 REMARK 3 L33: 13.2246 L12: -1.2712 REMARK 3 L13: -1.1779 L23: 2.2935 REMARK 3 S TENSOR REMARK 3 S11: 0.1911 S12: -0.0283 S13: 0.3507 REMARK 3 S21: -0.1949 S22: 0.0076 S23: 0.3276 REMARK 3 S31: -1.3087 S32: -1.0617 S33: -0.1987 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 32 REMARK 3 RESIDUE RANGE : A 63 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2510 16.6280 18.1510 REMARK 3 T TENSOR REMARK 3 T11: -0.2111 T22: -0.0409 REMARK 3 T33: -0.0159 T12: 0.0273 REMARK 3 T13: -0.0098 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 6.9078 L22: 3.4095 REMARK 3 L33: 4.7914 L12: 1.3388 REMARK 3 L13: -0.4398 L23: 2.4699 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: 0.4450 S13: 0.0261 REMARK 3 S21: -0.0011 S22: -0.1981 S23: 0.4491 REMARK 3 S31: -0.1236 S32: -0.4056 S33: 0.1122 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6860 9.6250 13.3540 REMARK 3 T TENSOR REMARK 3 T11: -0.1156 T22: -0.0452 REMARK 3 T33: 0.1056 T12: -0.0341 REMARK 3 T13: 0.0100 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 6.3306 L22: 2.3937 REMARK 3 L33: 19.6699 L12: -3.7320 REMARK 3 L13: 4.4701 L23: -0.8467 REMARK 3 S TENSOR REMARK 3 S11: 0.2431 S12: 0.6463 S13: -0.1623 REMARK 3 S21: -0.1422 S22: -0.3052 S23: -0.2746 REMARK 3 S31: 0.8877 S32: 0.2142 S33: 0.0620 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 RESIDUE RANGE : B 86 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0090 29.7740 28.5060 REMARK 3 T TENSOR REMARK 3 T11: -0.0465 T22: -0.1538 REMARK 3 T33: 0.0195 T12: 0.0273 REMARK 3 T13: 0.0026 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5277 L22: 5.9814 REMARK 3 L33: 15.4558 L12: -0.9725 REMARK 3 L13: 0.3526 L23: -6.4289 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.1169 S13: 0.4377 REMARK 3 S21: 0.1519 S22: 0.0155 S23: 0.1114 REMARK 3 S31: -1.4786 S32: -0.4551 S33: -0.0416 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 32 REMARK 3 RESIDUE RANGE : B 63 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2800 25.8790 36.2460 REMARK 3 T TENSOR REMARK 3 T11: -0.0573 T22: -0.1727 REMARK 3 T33: -0.0330 T12: -0.0656 REMARK 3 T13: 0.0468 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 6.6208 L22: 5.2400 REMARK 3 L33: 3.6710 L12: 2.6432 REMARK 3 L13: 2.6082 L23: -0.9338 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0948 S13: 0.3111 REMARK 3 S21: 0.4816 S22: -0.0890 S23: -0.1794 REMARK 3 S31: -0.5309 S32: 0.1282 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4500 14.9410 41.0610 REMARK 3 T TENSOR REMARK 3 T11: -0.0937 T22: -0.0119 REMARK 3 T33: 0.1441 T12: 0.0046 REMARK 3 T13: 0.0376 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.7917 L22: 7.0758 REMARK 3 L33: 16.9554 L12: 0.6631 REMARK 3 L13: 3.6487 L23: 4.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: 0.1601 S13: -0.6147 REMARK 3 S21: 0.8241 S22: 0.2202 S23: -0.0551 REMARK 3 S31: 0.5837 S32: 0.4708 S33: -0.2647 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000067906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.53 REMARK 200 MONOCHROMATOR : NI FOIL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 53.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M NACL, 0.1M SODIUM ACETATE, PH REMARK 280 4.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.69000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.38000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.53500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.22500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 42.68 -107.14 REMARK 500 CYS A 67 -137.57 40.43 REMARK 500 CYS B 67 -110.94 10.53 REMARK 500 PRO B 79 47.84 -74.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 66 CYS B 67 -144.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BME A 203 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 017 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 100 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GGT RELATED DB: PDB REMARK 900 RELATED ID: 3GGU RELATED DB: PDB REMARK 900 RELATED ID: 3QOZ RELATED DB: PDB DBREF 3TTP A 1 99 UNP P03367 POL_HV1BR 501 599 DBREF 3TTP B 1 99 UNP P03367 POL_HV1BR 501 599 SEQADV 3TTP VAL A 13 UNP P03367 ILE 513 ENGINEERED MUTATION SEQADV 3TTP ARG A 20 UNP P03367 LYS 520 ENGINEERED MUTATION SEQADV 3TTP ILE A 32 UNP P03367 VAL 532 ENGINEERED MUTATION SEQADV 3TTP PHE A 33 UNP P03367 LEU 533 ENGINEERED MUTATION SEQADV 3TTP ASP A 35 UNP P03367 GLU 535 ENGINEERED MUTATION SEQADV 3TTP ILE A 36 UNP P03367 MET 536 ENGINEERED MUTATION SEQADV 3TTP ASN A 37 UNP P03367 SER 537 ENGINEERED MUTATION SEQADV 3TTP LYS A 41 UNP P03367 ARG 541 ENGINEERED MUTATION SEQADV 3TTP THR A 43 UNP P03367 LYS 543 ENGINEERED MUTATION SEQADV 3TTP VAL A 47 UNP P03367 ILE 547 ENGINEERED MUTATION SEQADV 3TTP MET A 54 UNP P03367 ILE 554 ENGINEERED MUTATION SEQADV 3TTP VAL A 62 UNP P03367 ILE 562 ENGINEERED MUTATION SEQADV 3TTP VAL A 63 UNP P03367 LEU 563 ENGINEERED MUTATION SEQADV 3TTP VAL A 71 UNP P03367 ALA 571 ENGINEERED MUTATION SEQADV 3TTP THR A 72 UNP P03367 ILE 572 ENGINEERED MUTATION SEQADV 3TTP SER A 73 UNP P03367 GLY 573 ENGINEERED MUTATION SEQADV 3TTP PRO A 74 UNP P03367 THR 574 ENGINEERED MUTATION SEQADV 3TTP LEU A 82 UNP P03367 VAL 582 ENGINEERED MUTATION SEQADV 3TTP VAL A 89 UNP P03367 LEU 589 ENGINEERED MUTATION SEQADV 3TTP LEU A 93 UNP P03367 ILE 593 ENGINEERED MUTATION SEQADV 3TTP VAL B 13 UNP P03367 ILE 513 ENGINEERED MUTATION SEQADV 3TTP ARG B 20 UNP P03367 LYS 520 ENGINEERED MUTATION SEQADV 3TTP ILE B 32 UNP P03367 VAL 532 ENGINEERED MUTATION SEQADV 3TTP PHE B 33 UNP P03367 LEU 533 ENGINEERED MUTATION SEQADV 3TTP ASP B 35 UNP P03367 GLU 535 ENGINEERED MUTATION SEQADV 3TTP ILE B 36 UNP P03367 MET 536 ENGINEERED MUTATION SEQADV 3TTP ASN B 37 UNP P03367 SER 537 ENGINEERED MUTATION SEQADV 3TTP LYS B 41 UNP P03367 ARG 541 ENGINEERED MUTATION SEQADV 3TTP THR B 43 UNP P03367 LYS 543 ENGINEERED MUTATION SEQADV 3TTP VAL B 47 UNP P03367 ILE 547 ENGINEERED MUTATION SEQADV 3TTP MET B 54 UNP P03367 ILE 554 ENGINEERED MUTATION SEQADV 3TTP VAL B 62 UNP P03367 ILE 562 ENGINEERED MUTATION SEQADV 3TTP VAL B 63 UNP P03367 LEU 563 ENGINEERED MUTATION SEQADV 3TTP VAL B 71 UNP P03367 ALA 571 ENGINEERED MUTATION SEQADV 3TTP THR B 72 UNP P03367 ILE 572 ENGINEERED MUTATION SEQADV 3TTP SER B 73 UNP P03367 GLY 573 ENGINEERED MUTATION SEQADV 3TTP PRO B 74 UNP P03367 THR 574 ENGINEERED MUTATION SEQADV 3TTP LEU B 82 UNP P03367 VAL 582 ENGINEERED MUTATION SEQADV 3TTP VAL B 89 UNP P03367 LEU 589 ENGINEERED MUTATION SEQADV 3TTP LEU B 93 UNP P03367 ILE 593 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP GLN ARG PRO LEU VAL THR VAL SEQRES 2 A 99 LYS ILE GLY GLY GLN LEU ARG GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR ILE PHE GLU ASP ILE ASN LEU PRO SEQRES 4 A 99 GLY LYS TRP THR PRO LYS MET VAL GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE MET LYS VAL ARG GLN TYR ASP GLN VAL VAL ILE GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS VAL THR SER PRO VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO LEU ASN ILE ILE GLY ARG ASN VAL LEU THR SEQRES 8 A 99 GLN LEU GLY CYS THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP GLN ARG PRO LEU VAL THR VAL SEQRES 2 B 99 LYS ILE GLY GLY GLN LEU ARG GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR ILE PHE GLU ASP ILE ASN LEU PRO SEQRES 4 B 99 GLY LYS TRP THR PRO LYS MET VAL GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE MET LYS VAL ARG GLN TYR ASP GLN VAL VAL ILE GLU SEQRES 6 B 99 ILE CYS GLY HIS LYS VAL THR SER PRO VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO LEU ASN ILE ILE GLY ARG ASN VAL LEU THR SEQRES 8 B 99 GLN LEU GLY CYS THR LEU ASN PHE HET 017 A 201 76 HET CL A 202 1 HET BME A 203 1 HET CL B 100 1 HETNAM 017 (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3- HETNAM 2 017 [[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2- HETNAM 3 017 HYDROXYPROPYLCARBAMATE HETNAM CL CHLORIDE ION HETNAM BME BETA-MERCAPTOETHANOL HETSYN 017 DARUNAVIR; TMC114; UIC-94017 FORMUL 3 017 C27 H37 N3 O7 S FORMUL 4 CL 2(CL 1-) FORMUL 5 BME C2 H6 O S FORMUL 7 HOH *68(H2 O) HELIX 1 1 GLY A 86 THR A 91 1 6 HELIX 2 2 GLN A 92 GLY A 94 5 3 HELIX 3 3 GLY B 86 THR B 91 1 6 HELIX 4 4 GLN B 92 GLY B 94 5 3 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N ASN A 98 O THR B 96 SHEET 4 A 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 B 8 THR A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O GLY A 52 N GLY A 49 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O VAL A 71 N ILE A 64 SHEET 4 B 8 ILE A 32 PHE A 33 1 N PHE A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N ILE A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 LEU A 10 ILE A 15 -1 N VAL A 13 O ARG A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N LYS A 14 SHEET 1 C 8 THR B 43 GLY B 49 0 SHEET 2 C 8 GLY B 52 ILE B 66 -1 O GLY B 52 N GLY B 49 SHEET 3 C 8 HIS B 69 VAL B 77 -1 O VAL B 75 N TYR B 59 SHEET 4 C 8 ILE B 32 PHE B 33 1 N PHE B 33 O LEU B 76 SHEET 5 C 8 ILE B 84 ILE B 85 -1 O ILE B 84 N ILE B 32 SHEET 6 C 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 C 8 LEU B 10 ILE B 15 -1 N VAL B 11 O ALA B 22 SHEET 8 C 8 GLY B 52 ILE B 66 -1 O GLU B 65 N LYS B 14 SITE 1 AC1 23 ASP A 25 GLY A 27 ALA A 28 ASP A 29 SITE 2 AC1 23 ASP A 30 GLY A 48 GLY A 49 ILE A 50 SITE 3 AC1 23 PRO A 81 ILE A 84 HOH A 301 HOH A 329 SITE 4 AC1 23 ASP B 25 GLY B 27 ALA B 28 ASP B 29 SITE 5 AC1 23 ASP B 30 GLY B 48 GLY B 49 ILE B 50 SITE 6 AC1 23 PRO B 81 LEU B 82 ILE B 84 SITE 1 AC2 1 LYS A 55 SITE 1 AC3 1 SER B 73 CRYST1 61.660 61.660 83.070 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016218 0.009363 0.000000 0.00000 SCALE2 0.000000 0.018727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012038 0.00000