HEADER LIGASE/RNA 17-SEP-11 3TUP TITLE CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL PHERS COMPLEXED WITH TRNAPHE TITLE 2 IN THE ACTIVE OPEN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MITOCHONDRIAL PHERS, UNP RESIDUES 38-451; COMPND 5 SYNONYM: PHENYLALANINE--TRNA LIGASE, PHERS; COMPND 6 EC: 6.1.1.20; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: THERMUS THERMOPHILUS TRNAPHE; COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FARS2, FARS1, HSPC320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 10 ORGANISM_TAXID: 274; SOURCE 11 EXPRESSION_SYSTEM: THERMUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 270 KEYWDS CLASS II AARS, RRM FOLD, AMINOACYLATION, MITOCHONDRIA, LIGASE-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SAFRO,L.KLIPCAN,N.MOOR,I.FINAROV,N.KESSLER,M.SUKHANOVA REVDAT 4 28-FEB-24 3TUP 1 SEQADV REVDAT 3 01-FEB-12 3TUP 1 JRNL REVDAT 2 28-DEC-11 3TUP 1 JRNL REVDAT 1 23-NOV-11 3TUP 0 JRNL AUTH L.KLIPCAN,N.MOOR,I.FINAROV,N.KESSLER,M.SUKHANOVA,M.G.SAFRO JRNL TITL CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL PHERS COMPLEXED JRNL TITL 2 WITH TRNA(PHE) IN THE ACTIVE "OPEN" STATE. JRNL REF J.MOL.BIOL. V. 415 527 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22137894 JRNL DOI 10.1016/J.JMB.2011.11.029 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : 1.540 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000067942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18827 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 38.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 100 MM MES REMARK 280 MONO-HYDRATE, PH 7, AND 30 % W/V PEG-MME 5,000, SMALL TUBES, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.09200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.18400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.18400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.09200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 CYS A 5 REMARK 465 ALA A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 C T 75 REMARK 465 A T 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 349 O ILE A 352 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G T 1 P G T 1 OP3 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 291 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 G T 18 N9 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 G T 19 N9 - C1' - C2' ANGL. DEV. = 8.3 DEGREES REMARK 500 G T 46 N9 - C1' - C2' ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 -153.71 -47.32 REMARK 500 ASP A 25 -174.40 158.83 REMARK 500 SER A 28 121.30 -37.07 REMARK 500 ASN A 29 31.06 -151.61 REMARK 500 LYS A 33 -75.56 -39.49 REMARK 500 LEU A 35 -38.26 -35.82 REMARK 500 ASN A 41 71.30 38.98 REMARK 500 HIS A 43 42.94 -72.60 REMARK 500 ASN A 44 -3.59 -162.84 REMARK 500 GLN A 45 39.21 -70.54 REMARK 500 GLN A 46 -85.57 33.82 REMARK 500 HIS A 47 32.16 -71.39 REMARK 500 VAL A 66 100.03 -171.20 REMARK 500 ARG A 68 -157.80 68.97 REMARK 500 PHE A 69 -129.13 -64.00 REMARK 500 VAL A 83 91.90 -66.15 REMARK 500 THR A 85 -170.20 -65.60 REMARK 500 GLN A 88 -75.39 -65.40 REMARK 500 PHE A 90 -55.45 -123.79 REMARK 500 LEU A 93 33.09 -96.25 REMARK 500 LEU A 94 12.15 50.78 REMARK 500 SER A 101 10.14 -54.52 REMARK 500 ASP A 106 -29.07 -144.14 REMARK 500 ARG A 117 121.39 -19.78 REMARK 500 SER A 121 -4.95 -53.62 REMARK 500 LEU A 128 -75.79 -51.31 REMARK 500 HIS A 129 -59.35 -26.23 REMARK 500 ALA A 130 -87.38 -39.79 REMARK 500 ASP A 145 -175.90 -172.29 REMARK 500 GLN A 146 -173.58 -53.65 REMARK 500 PHE A 170 -77.49 -81.10 REMARK 500 ALA A 171 -84.14 50.54 REMARK 500 LYS A 174 88.97 -55.51 REMARK 500 ASP A 175 75.38 -47.27 REMARK 500 GLU A 177 66.41 -58.39 REMARK 500 LEU A 181 -9.64 -46.41 REMARK 500 GLU A 183 -158.30 -125.89 REMARK 500 SER A 185 -110.29 -47.44 REMARK 500 SER A 186 149.62 -177.75 REMARK 500 GLN A 209 -70.33 -55.27 REMARK 500 ASP A 221 23.16 -167.27 REMARK 500 HIS A 236 -86.16 -96.16 REMARK 500 PHE A 245 140.94 -176.45 REMARK 500 HIS A 246 -3.17 82.32 REMARK 500 ALA A 266 -106.38 -61.20 REMARK 500 PHE A 276 136.15 -174.93 REMARK 500 LEU A 283 -72.91 -52.37 REMARK 500 ALA A 284 -0.88 -49.08 REMARK 500 ILE A 293 -44.48 -15.77 REMARK 500 PHE A 296 -18.35 -44.90 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G T 18 0.07 SIDE CHAIN REMARK 500 G T 46 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CMQ RELATED DB: PDB REMARK 900 RELATED ID: 1PYS RELATED DB: PDB DBREF 3TUP A 2 415 UNP O95363 SYFM_HUMAN 38 451 DBREF 3TUP T 1 76 PDB 3TUP 3TUP 1 76 SEQADV 3TUP MET A 1 UNP O95363 INITIATING METHIONINE SEQRES 1 A 415 MET ALA ALA GLU CYS ALA THR GLN ARG ALA PRO GLY SER SEQRES 2 A 415 VAL VAL GLU LEU LEU GLY LYS SER TYR PRO GLN ASP ASP SEQRES 3 A 415 HIS SER ASN LEU THR ARG LYS VAL LEU THR ARG VAL GLY SEQRES 4 A 415 ARG ASN LEU HIS ASN GLN GLN HIS HIS PRO LEU TRP LEU SEQRES 5 A 415 ILE LYS GLU ARG VAL LYS GLU HIS PHE TYR LYS GLN TYR SEQRES 6 A 415 VAL GLY ARG PHE GLY THR PRO LEU PHE SER VAL TYR ASP SEQRES 7 A 415 ASN LEU SER PRO VAL VAL THR THR TRP GLN ASN PHE ASP SEQRES 8 A 415 SER LEU LEU ILE PRO ALA ASP HIS PRO SER ARG LYS LYS SEQRES 9 A 415 GLY ASP ASN TYR TYR LEU ASN ARG THR HIS MET LEU ARG SEQRES 10 A 415 ALA HIS THR SER ALA HIS GLN TRP ASP LEU LEU HIS ALA SEQRES 11 A 415 GLY LEU ASP ALA PHE LEU VAL VAL GLY ASP VAL TYR ARG SEQRES 12 A 415 ARG ASP GLN ILE ASP SER GLN HIS TYR PRO ILE PHE HIS SEQRES 13 A 415 GLN LEU GLU ALA VAL ARG LEU PHE SER LYS HIS GLU LEU SEQRES 14 A 415 PHE ALA GLY ILE LYS ASP GLY GLU SER LEU GLN LEU PHE SEQRES 15 A 415 GLU GLN SER SER ARG SER ALA HIS LYS GLN GLU THR HIS SEQRES 16 A 415 THR MET GLU ALA VAL LYS LEU VAL GLU PHE ASP LEU LYS SEQRES 17 A 415 GLN THR LEU THR ARG LEU MET ALA HIS LEU PHE GLY ASP SEQRES 18 A 415 GLU LEU GLU ILE ARG TRP VAL ASP CYS TYR PHE PRO PHE SEQRES 19 A 415 THR HIS PRO SER PHE GLU MET GLU ILE ASN PHE HIS GLY SEQRES 20 A 415 GLU TRP LEU GLU VAL LEU GLY CYS GLY VAL MET GLU GLN SEQRES 21 A 415 GLN LEU VAL ASN SER ALA GLY ALA GLN ASP ARG ILE GLY SEQRES 22 A 415 TRP ALA PHE GLY LEU GLY LEU GLU ARG LEU ALA MET ILE SEQRES 23 A 415 LEU TYR ASP ILE PRO ASP ILE ARG LEU PHE TRP CYS GLU SEQRES 24 A 415 ASP GLU ARG PHE LEU LYS GLN PHE CYS VAL SER ASN ILE SEQRES 25 A 415 ASN GLN LYS VAL LYS PHE GLN PRO LEU SER LYS TYR PRO SEQRES 26 A 415 ALA VAL ILE ASN ASP ILE SER PHE TRP LEU PRO SER GLU SEQRES 27 A 415 ASN TYR ALA GLU ASN ASP PHE TYR ASP LEU VAL ARG THR SEQRES 28 A 415 ILE GLY GLY ASP LEU VAL GLU LYS VAL ASP LEU ILE ASP SEQRES 29 A 415 LYS PHE VAL HIS PRO LYS THR HIS LYS THR SER HIS CYS SEQRES 30 A 415 TYR ARG ILE THR TYR ARG HIS MET GLU ARG THR LEU SER SEQRES 31 A 415 GLN ARG GLU VAL ARG HIS ILE HIS GLN ALA LEU GLN GLU SEQRES 32 A 415 ALA ALA VAL GLN LEU LEU GLY VAL GLU GLY ARG PHE SEQRES 1 T 76 G C C G A G G U A G C U C SEQRES 2 T 76 A G U U G G U A G A G C A SEQRES 3 T 76 U G C G A C U G A A A A U SEQRES 4 T 76 C G C A G U G U C G G C G SEQRES 5 T 76 G U U C G A U U C U G C U SEQRES 6 T 76 C C U C G G C A C C A HELIX 1 1 THR A 31 VAL A 38 1 8 HELIX 2 2 HIS A 48 TYR A 65 1 18 HELIX 3 3 THR A 86 PHE A 90 1 5 HELIX 4 4 HIS A 99 ASN A 107 5 9 HELIX 5 5 HIS A 119 ALA A 122 5 4 HELIX 6 6 HIS A 123 GLY A 131 1 9 HELIX 7 7 THR A 196 GLY A 220 1 25 HELIX 8 8 GLU A 259 ALA A 266 1 8 HELIX 9 9 LEU A 280 LEU A 287 1 8 HELIX 10 10 ASP A 292 CYS A 298 5 7 HELIX 11 11 ASP A 300 LYS A 305 1 6 HELIX 12 12 ALA A 341 ILE A 352 1 12 HELIX 13 13 SER A 390 GLY A 410 1 21 SHEET 1 A 2 VAL A 15 GLU A 16 0 SHEET 2 A 2 SER A 21 TYR A 22 -1 O TYR A 22 N VAL A 15 SHEET 1 B 3 VAL A 83 THR A 85 0 SHEET 2 B 3 HIS A 114 LEU A 116 -1 O MET A 115 N VAL A 84 SHEET 3 B 3 TYR A 109 ASN A 111 -1 N LEU A 110 O HIS A 114 SHEET 1 C 6 ALA A 134 TYR A 142 0 SHEET 2 C 6 ILE A 154 PHE A 164 -1 O PHE A 155 N VAL A 141 SHEET 3 C 6 ILE A 272 GLY A 279 -1 O PHE A 276 N ALA A 160 SHEET 4 C 6 LEU A 253 VAL A 257 -1 N GLY A 256 O ALA A 275 SHEET 5 C 6 THR A 235 PHE A 239 -1 N PHE A 239 O CYS A 255 SHEET 6 C 6 ASP A 229 PHE A 232 -1 N CYS A 230 O SER A 238 SHEET 1 D 3 GLU A 224 ARG A 226 0 SHEET 2 D 3 GLU A 242 PHE A 245 -1 O GLU A 242 N ARG A 226 SHEET 3 D 3 GLU A 248 GLU A 251 -1 O LEU A 250 N ILE A 243 SHEET 1 E 4 VAL A 360 VAL A 367 0 SHEET 2 E 4 THR A 374 TYR A 382 -1 O ARG A 379 N ASP A 361 SHEET 3 E 4 VAL A 327 TRP A 334 -1 N VAL A 327 O TYR A 382 SHEET 4 E 4 GLU A 412 GLY A 413 -1 O GLU A 412 N TRP A 334 CRYST1 116.041 116.041 123.276 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008618 0.004975 0.000000 0.00000 SCALE2 0.000000 0.009951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008112 0.00000