HEADER HYDROLASE 19-SEP-11 3TUV TITLE CRYSTAL STRUCTURE OF INSULYSIN WITH BOUND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN-DEGRADING ENZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-1019; COMPND 5 SYNONYM: INSULIN PROTEASE, INSULINASE, INSULYSIN; COMPND 6 EC: 3.4.24.56; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PEPTIDE LIKELY CLEAVAGE PRODUCT FROM POLYHISTIDINE TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: IDE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS THERMOLYSIN-LIKE FOLD ACTIVE SITE REGION, HYDROLYASE, PEPTIDASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.W.RODGERS,N.NOINAJ REVDAT 3 28-FEB-24 3TUV 1 REMARK REVDAT 2 11-JAN-12 3TUV 1 JRNL REVDAT 1 26-OCT-11 3TUV 0 JRNL AUTH N.NOINAJ,E.S.SONG,S.BHASIN,B.J.ALPER,W.K.SCHMIDT,L.B.HERSH, JRNL AUTH 2 D.W.RODGERS JRNL TITL ANION ACTIVATION SITE OF INSULIN-DEGRADING ENZYME. JRNL REF J.BIOL.CHEM. V. 287 48 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22049080 JRNL DOI 10.1074/JBC.M111.264614 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 36467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.854 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8048 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10912 ; 0.927 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 967 ; 4.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 392 ;35.293 ;24.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1401 ;15.200 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;14.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1176 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6149 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3985 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5493 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 428 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 102 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5012 ; 0.295 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7826 ; 0.527 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3469 ; 0.502 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3085 ; 0.842 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 100 MM SODIUM CITRATE REMARK 280 100 MM AMMONIUM ACETATE, 5 MM ATP, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.49200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.49200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1193 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 TRP A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 HIS A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 LEU A 17 REMARK 465 HIS A 18 REMARK 465 SER A 19 REMARK 465 ILE A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 VAL A 28 REMARK 465 LYS A 29 REMARK 465 ARG A 30 REMARK 465 LEU A 31 REMARK 465 CYS A 32 REMARK 465 GLY A 33 REMARK 465 PHE A 34 REMARK 465 PRO A 35 REMARK 465 LYS A 36 REMARK 465 GLN A 37 REMARK 465 ILE A 38 REMARK 465 TYR A 39 REMARK 465 SER A 40 REMARK 465 THR A 41 REMARK 465 VAL A 969 REMARK 465 GLY A 970 REMARK 465 GLU A 971 REMARK 465 PHE A 972 REMARK 465 PRO A 973 REMARK 465 SER A 974 REMARK 465 GLN A 975 REMARK 465 ASN A 976 REMARK 465 ASP A 977 REMARK 465 ILE A 1012 REMARK 465 ASN A 1013 REMARK 465 PHE A 1014 REMARK 465 MET A 1015 REMARK 465 ALA A 1016 REMARK 465 ALA A 1017 REMARK 465 LYS A 1018 REMARK 465 LEU A 1019 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 192 CD CE NZ REMARK 470 TYR A 224 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ILE A 235 CG1 CG2 CD1 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 GLN A 499 CG CD OE1 NE2 REMARK 470 LYS A 527 CD CE NZ REMARK 470 LYS A 657 CG CD CE NZ REMARK 470 LYS A 697 CG CD CE NZ REMARK 470 GLU A 702 CG CD OE1 OE2 REMARK 470 LYS A 756 CG CD CE NZ REMARK 470 ASP A 964 CG OD1 OD2 REMARK 470 SER A 965 OG REMARK 470 VAL A 968 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 53 73.87 -112.56 REMARK 500 HIS A 93 42.48 -75.47 REMARK 500 LEU A 116 63.18 -106.74 REMARK 500 LEU A 170 -56.17 -128.84 REMARK 500 LEU A 170 -58.86 -128.84 REMARK 500 GLU A 227 -43.64 -140.61 REMARK 500 ASN A 231 42.39 -83.84 REMARK 500 GLN A 232 -36.68 -144.97 REMARK 500 TYR A 325 30.65 -98.22 REMARK 500 ASN A 329 70.80 48.16 REMARK 500 ASP A 517 -157.41 -77.45 REMARK 500 LYS A 527 124.10 -38.57 REMARK 500 ALA A 544 138.93 -38.90 REMARK 500 LYS A 566 -17.46 -151.72 REMARK 500 ASP A 636 -69.18 -28.07 REMARK 500 ALA A 694 116.25 -163.11 REMARK 500 VAL A 785 -43.39 -130.17 REMARK 500 THR A 797 -89.12 -102.15 REMARK 500 ARG A 824 -60.22 -96.93 REMARK 500 ASP A 895 104.10 -43.72 REMARK 500 SER A 965 55.70 -143.14 REMARK 500 ASN A 979 -46.78 71.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1020 DBREF 3TUV A 1 1019 UNP P35559 IDE_RAT 1 1019 DBREF 3TUV B 1 3 PDB 3TUV 3TUV 1 3 SEQRES 1 A 1019 MET ARG ASN GLY LEU VAL TRP LEU LEU HIS PRO ALA LEU SEQRES 2 A 1019 PRO SER THR LEU HIS SER ILE LEU GLY ALA ARG PRO PRO SEQRES 3 A 1019 PRO VAL LYS ARG LEU CYS GLY PHE PRO LYS GLN ILE TYR SEQRES 4 A 1019 SER THR MET ASN ASN PRO ALA ILE GLN ARG ILE GLU ASP SEQRES 5 A 1019 HIS ILE VAL LYS SER PRO GLU ASP LYS ARG GLU TYR ARG SEQRES 6 A 1019 GLY LEU GLU LEU ALA ASN GLY ILE LYS VAL LEU LEU ILE SEQRES 7 A 1019 SER ASP PRO THR THR ASP LYS SER SER ALA ALA LEU ASP SEQRES 8 A 1019 VAL HIS ILE GLY SER LEU SER ASP PRO PRO ASN ILE PRO SEQRES 9 A 1019 GLY LEU SER HIS PHE CYS GLU HIS MET LEU PHE LEU GLY SEQRES 10 A 1019 THR LYS LYS TYR PRO LYS GLU ASN GLU TYR SER GLN PHE SEQRES 11 A 1019 LEU SER GLU HIS ALA GLY SER SER ASN ALA PHE THR SER SEQRES 12 A 1019 GLY GLU HIS THR ASN TYR TYR PHE ASP VAL SER HIS GLU SEQRES 13 A 1019 HIS LEU GLU GLY ALA LEU ASP ARG PHE ALA GLN PHE PHE SEQRES 14 A 1019 LEU CYS PRO LEU PHE ASP ALA SER CYS LYS ASP ARG GLU SEQRES 15 A 1019 VAL ASN ALA VAL ASP SER GLU HIS GLU LYS ASN VAL MET SEQRES 16 A 1019 ASN ASP ALA TRP ARG LEU PHE GLN LEU GLU LYS ALA THR SEQRES 17 A 1019 GLY ASN PRO LYS HIS PRO PHE SER LYS PHE GLY THR GLY SEQRES 18 A 1019 ASN LYS TYR THR LEU GLU THR ARG PRO ASN GLN GLU GLY SEQRES 19 A 1019 ILE ASP VAL ARG GLU GLU LEU LEU LYS PHE HIS SER THR SEQRES 20 A 1019 TYR TYR SER SER ASN LEU MET ALA ILE CYS VAL LEU GLY SEQRES 21 A 1019 ARG GLU SER LEU ASP ASP LEU THR ASN LEU VAL VAL LYS SEQRES 22 A 1019 LEU PHE SER GLU VAL GLU ASN LYS ASN VAL PRO LEU PRO SEQRES 23 A 1019 GLU PHE PRO GLU HIS PRO PHE GLN GLU GLU HIS LEU LYS SEQRES 24 A 1019 GLN LEU TYR LYS ILE VAL PRO ILE LYS ASP ILE ARG ASN SEQRES 25 A 1019 LEU TYR VAL THR PHE PRO ILE PRO ASP LEU GLN GLN TYR SEQRES 26 A 1019 TYR LYS SER ASN PRO GLY HIS TYR LEU GLY HIS LEU ILE SEQRES 27 A 1019 GLY HIS GLU GLY PRO GLY SER LEU LEU SER GLU LEU LYS SEQRES 28 A 1019 SER LYS GLY TRP VAL ASN THR LEU VAL GLY GLY GLN LYS SEQRES 29 A 1019 GLU GLY ALA ARG GLY PHE MET PHE PHE ILE ILE ASN VAL SEQRES 30 A 1019 ASP LEU THR GLU GLU GLY LEU LEU HIS VAL GLU ASP ILE SEQRES 31 A 1019 ILE LEU HIS MET PHE GLN TYR ILE GLN LYS LEU ARG ALA SEQRES 32 A 1019 GLU GLY PRO GLN GLU TRP VAL PHE GLN GLU CYS LYS ASP SEQRES 33 A 1019 LEU ASN ALA VAL ALA PHE ARG PHE LYS ASP LYS GLU ARG SEQRES 34 A 1019 PRO ARG GLY TYR THR SER LYS ILE ALA GLY LYS LEU HIS SEQRES 35 A 1019 TYR TYR PRO LEU ASN GLY VAL LEU THR ALA GLU TYR LEU SEQRES 36 A 1019 LEU GLU GLU PHE ARG PRO ASP LEU ILE ASP MET VAL LEU SEQRES 37 A 1019 ASP LYS LEU ARG PRO GLU ASN VAL ARG VAL ALA ILE VAL SEQRES 38 A 1019 SER LYS SER PHE GLU GLY LYS THR ASP ARG THR GLU GLN SEQRES 39 A 1019 TRP TYR GLY THR GLN TYR LYS GLN GLU ALA ILE PRO GLU SEQRES 40 A 1019 ASP VAL ILE GLN LYS TRP GLN ASN ALA ASP LEU ASN GLY SEQRES 41 A 1019 LYS PHE LYS LEU PRO THR LYS ASN GLU PHE ILE PRO THR SEQRES 42 A 1019 ASN PHE GLU ILE LEU ALA LEU GLU LYS ASP ALA THR PRO SEQRES 43 A 1019 TYR PRO ALA LEU ILE LYS ASP THR ALA MET SER LYS LEU SEQRES 44 A 1019 TRP PHE LYS GLN ASP ASP LYS PHE PHE LEU PRO LYS ALA SEQRES 45 A 1019 CYS LEU ASN PHE GLU PHE PHE SER PRO PHE ALA TYR VAL SEQRES 46 A 1019 ASP PRO LEU HIS CYS ASN MET ALA TYR LEU TYR LEU GLU SEQRES 47 A 1019 LEU LEU LYS ASP SER LEU ASN GLU TYR ALA TYR ALA ALA SEQRES 48 A 1019 GLU LEU ALA GLY LEU SER TYR ASP LEU GLN ASN THR ILE SEQRES 49 A 1019 TYR GLY MET TYR LEU SER VAL LYS GLY TYR ASN ASP LYS SEQRES 50 A 1019 GLN PRO ILE LEU LEU LYS LYS ILE THR GLU LYS MET ALA SEQRES 51 A 1019 THR PHE GLU ILE ASP LYS LYS ARG PHE GLU ILE ILE LYS SEQRES 52 A 1019 GLU ALA TYR MET ARG SER LEU ASN ASN PHE ARG ALA GLU SEQRES 53 A 1019 GLN PRO HIS GLN HIS ALA MET TYR TYR LEU ARG LEU LEU SEQRES 54 A 1019 MET THR GLU VAL ALA TRP THR LYS ASP GLU LEU LYS GLU SEQRES 55 A 1019 ALA LEU ASP ASP VAL THR LEU PRO ARG LEU LYS ALA PHE SEQRES 56 A 1019 ILE PRO GLN LEU LEU SER ARG LEU HIS ILE GLU ALA LEU SEQRES 57 A 1019 LEU HIS GLY ASN ILE THR LYS GLN ALA ALA LEU GLY VAL SEQRES 58 A 1019 MET GLN MET VAL GLU ASP THR LEU ILE GLU HIS ALA HIS SEQRES 59 A 1019 THR LYS PRO LEU LEU PRO SER GLN LEU VAL ARG TYR ARG SEQRES 60 A 1019 GLU VAL GLN LEU PRO ASP ARG GLY TRP PHE VAL TYR GLN SEQRES 61 A 1019 ARG ARG ASN GLU VAL HIS ASN ASN CYS GLY ILE GLU ILE SEQRES 62 A 1019 TYR TYR GLN THR ASP MET GLN SER THR SER GLU ASN MET SEQRES 63 A 1019 PHE LEU GLU LEU PHE CYS GLN ILE ILE SER GLU PRO CYS SEQRES 64 A 1019 PHE ASN THR LEU ARG THR LYS GLU GLN LEU GLY TYR ILE SEQRES 65 A 1019 VAL PHE SER GLY PRO ARG ARG ALA ASN GLY ILE GLN GLY SEQRES 66 A 1019 LEU ARG PHE ILE ILE GLN SER GLU LYS PRO PRO HIS TYR SEQRES 67 A 1019 LEU GLU SER ARG VAL GLU ALA PHE LEU ILE THR MET GLU SEQRES 68 A 1019 LYS ALA ILE GLU ASP MET THR GLU GLU ALA PHE GLN LYS SEQRES 69 A 1019 HIS ILE GLN ALA LEU ALA ILE ARG ARG LEU ASP LYS PRO SEQRES 70 A 1019 LYS LYS LEU SER ALA GLU CYS ALA LYS TYR TRP GLY GLU SEQRES 71 A 1019 ILE ILE SER GLN GLN TYR ASN TYR ASP ARG ASP ASN ILE SEQRES 72 A 1019 GLU VAL ALA TYR LEU LYS THR LEU SER LYS ASP ASP ILE SEQRES 73 A 1019 ILE LYS PHE TYR LYS GLU MET LEU ALA VAL ASP ALA PRO SEQRES 74 A 1019 ARG ARG HIS LYS VAL SER VAL HIS VAL LEU ALA ARG GLU SEQRES 75 A 1019 MET ASP SER CYS PRO VAL VAL GLY GLU PHE PRO SER GLN SEQRES 76 A 1019 ASN ASP ILE ASN LEU SER GLU ALA PRO PRO LEU PRO GLN SEQRES 77 A 1019 PRO GLU VAL ILE HIS ASN MET THR GLU PHE LYS ARG GLY SEQRES 78 A 1019 LEU PRO LEU PHE PRO LEU VAL LYS PRO HIS ILE ASN PHE SEQRES 79 A 1019 MET ALA ALA LYS LEU SEQRES 1 B 3 UNK UNK UNK HET ATP A1020 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 HOH *226(H2 O) HELIX 1 1 GLY A 95 ASP A 99 5 5 HELIX 2 2 GLY A 105 PHE A 115 1 11 HELIX 3 3 ASN A 125 GLU A 133 1 9 HELIX 4 4 HIS A 157 GLN A 167 1 11 HELIX 5 5 PHE A 168 LEU A 170 5 3 HELIX 6 6 ASP A 175 VAL A 194 1 20 HELIX 7 7 ASN A 196 THR A 208 1 13 HELIX 8 8 HIS A 213 LYS A 217 5 5 HELIX 9 9 ASN A 222 GLU A 227 1 6 HELIX 10 10 ARG A 229 GLY A 234 1 6 HELIX 11 11 ASP A 236 TYR A 249 1 14 HELIX 12 12 SER A 250 ASN A 252 5 3 HELIX 13 13 SER A 263 SER A 276 1 14 HELIX 14 14 GLN A 294 LEU A 298 5 5 HELIX 15 15 LEU A 322 TYR A 326 5 5 HELIX 16 16 ASN A 329 GLY A 339 1 11 HELIX 17 17 SER A 345 LYS A 353 1 9 HELIX 18 18 THR A 380 HIS A 386 1 7 HELIX 19 19 HIS A 386 GLY A 405 1 20 HELIX 20 20 GLN A 407 PHE A 424 1 18 HELIX 21 21 ARG A 429 LEU A 441 1 13 HELIX 22 22 PRO A 445 VAL A 449 5 5 HELIX 23 23 ARG A 460 ASP A 469 1 10 HELIX 24 24 LYS A 470 LEU A 471 5 2 HELIX 25 25 ARG A 472 ASN A 475 5 4 HELIX 26 26 LYS A 483 GLU A 486 5 4 HELIX 27 27 PRO A 506 ASN A 515 1 10 HELIX 28 28 PRO A 581 TYR A 584 5 4 HELIX 29 29 ASP A 586 ALA A 614 1 29 HELIX 30 30 LYS A 637 THR A 651 1 15 HELIX 31 31 ASP A 655 ASN A 672 1 18 HELIX 32 32 PHE A 673 GLU A 676 5 4 HELIX 33 33 GLN A 677 MET A 690 1 14 HELIX 34 34 THR A 696 ASP A 705 1 10 HELIX 35 35 THR A 708 SER A 721 1 14 HELIX 36 36 THR A 734 ALA A 753 1 20 HELIX 37 37 LEU A 759 LEU A 763 5 5 HELIX 38 38 SER A 801 ARG A 824 1 24 HELIX 39 39 PRO A 855 MET A 877 1 23 HELIX 40 40 THR A 878 ASP A 895 1 18 HELIX 41 41 LYS A 899 SER A 913 1 15 HELIX 42 42 ASP A 919 LYS A 929 1 11 HELIX 43 43 SER A 932 LEU A 944 1 13 HELIX 44 44 ASN A 994 GLY A 1001 1 8 SHEET 1 A 7 ILE A 47 GLU A 51 0 SHEET 2 A 7 GLU A 63 LEU A 69 -1 O GLY A 66 N GLU A 51 SHEET 3 A 7 LYS A 74 SER A 79 -1 O VAL A 75 N LEU A 67 SHEET 4 A 7 MET A 254 GLY A 260 1 O VAL A 258 N ILE A 78 SHEET 5 A 7 LYS A 85 VAL A 92 -1 N SER A 87 O LEU A 259 SHEET 6 A 7 THR A 147 SER A 154 -1 O TYR A 149 N LEU A 90 SHEET 7 A 7 SER A 137 THR A 142 -1 N PHE A 141 O ASN A 148 SHEET 1 B 7 VAL A 356 ALA A 367 0 SHEET 2 B 7 PHE A 370 LEU A 379 -1 O PHE A 372 N LYS A 364 SHEET 3 B 7 ASN A 312 PRO A 320 -1 N LEU A 313 O VAL A 377 SHEET 4 B 7 ARG A 477 VAL A 481 -1 O VAL A 481 N ASN A 312 SHEET 5 B 7 GLN A 300 ILE A 304 1 N ILE A 304 O ILE A 480 SHEET 6 B 7 GLN A 499 ALA A 504 -1 O GLU A 503 N LEU A 301 SHEET 7 B 7 ARG A 491 THR A 492 -1 N ARG A 491 O TYR A 500 SHEET 1 C 6 ALA A 549 ASP A 553 0 SHEET 2 C 6 SER A 557 GLN A 563 -1 O PHE A 561 N ALA A 549 SHEET 3 C 6 ARG A 722 GLY A 731 1 O ILE A 725 N LYS A 558 SHEET 4 C 6 LYS A 571 PHE A 579 -1 N PHE A 579 O HIS A 724 SHEET 5 C 6 GLY A 626 TYR A 634 -1 O VAL A 631 N LEU A 574 SHEET 6 C 6 LEU A 616 ASN A 622 -1 N ASP A 619 O SER A 630 SHEET 1 D 4 ALA A 549 ASP A 553 0 SHEET 2 D 4 SER A 557 GLN A 563 -1 O PHE A 561 N ALA A 549 SHEET 3 D 4 ARG A 722 GLY A 731 1 O ILE A 725 N LYS A 558 SHEET 4 D 4 LYS A 756 PRO A 757 1 O LYS A 756 N LEU A 723 SHEET 1 E 6 VAL A 833 ALA A 840 0 SHEET 2 E 6 ILE A 843 SER A 852 -1 O ILE A 849 N PHE A 834 SHEET 3 E 6 CYS A 789 MET A 799 -1 N CYS A 789 O SER A 852 SHEET 4 E 6 HIS A 952 LEU A 959 -1 O VAL A 954 N TYR A 794 SHEET 5 E 6 TRP A 776 ARG A 782 1 N ARG A 781 O LEU A 959 SHEET 6 E 6 GLU A 990 ILE A 992 1 O GLU A 990 N TRP A 776 SITE 1 AC1 9 ARG A 429 ASP A 895 LYS A 896 PRO A 897 SITE 2 AC1 9 LYS A 898 LYS A 899 SER A 901 ALA A 902 SITE 3 AC1 9 ALA A 905 CRYST1 114.984 70.660 114.060 90.00 92.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008697 0.000000 0.000400 0.00000 SCALE2 0.000000 0.014152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008777 0.00000