HEADER TRANSFERASE 19-SEP-11 3TUX TITLE CRYSTAL STRUCTURE OF RTCA.ATP.MN TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA 3'-TERMINAL PHOSPHATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA CYCLASE, RNA-3'-PHOSPHATE CYCLASE; COMPND 5 EC: 6.5.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B4475, JW5688, RTCA, YHGJ, YHGK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIZATION OF RNA 3'-PHOSPHATE ENDS, TRANSFERASE, CYCLASE FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR A.K.CHAKRAVARTY,P.SMITH,S.SHUMAN REVDAT 3 13-SEP-23 3TUX 1 REMARK SEQADV LINK REVDAT 2 18-JAN-12 3TUX 1 JRNL REVDAT 1 28-DEC-11 3TUX 0 JRNL AUTH A.K.CHAKRAVARTY,P.SMITH,S.SHUMAN JRNL TITL STRUCTURES OF RNA 3'-PHOSPHATE CYCLASE BOUND TO ATP REVEAL JRNL TITL 2 THE MECHANISM OF NUCLEOTIDYL TRANSFER AND METAL-ASSISTED JRNL TITL 3 CATALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 21034 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22167800 JRNL DOI 10.1073/PNAS.1115560108 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_833) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 25886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6604 - 3.8448 0.99 2918 163 0.1723 0.2376 REMARK 3 2 3.8448 - 3.0531 0.99 2793 131 0.1629 0.2050 REMARK 3 3 3.0531 - 2.6676 0.99 2763 137 0.1864 0.2683 REMARK 3 4 2.6676 - 2.4239 0.99 2726 158 0.1882 0.2559 REMARK 3 5 2.4239 - 2.2503 0.99 2708 158 0.1944 0.2684 REMARK 3 6 2.2503 - 2.1176 0.98 2723 130 0.1929 0.2716 REMARK 3 7 2.1176 - 2.0116 0.98 2706 132 0.2064 0.2687 REMARK 3 8 2.0116 - 1.9241 0.97 2630 158 0.2271 0.3012 REMARK 3 9 1.9241 - 1.8500 0.96 2608 144 0.2479 0.3074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 36.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.79210 REMARK 3 B22 (A**2) : -1.90880 REMARK 3 B33 (A**2) : 4.85710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2621 REMARK 3 ANGLE : 1.164 3571 REMARK 3 CHIRALITY : 0.068 416 REMARK 3 PLANARITY : 0.005 463 REMARK 3 DIHEDRAL : 13.784 952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000067950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9499 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 27.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3KGD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG5000 MME, 150 MM AMMONIUM REMARK 280 SULFATE, 100 MM MES PH6.5, 10 MM ATP, 20 MM MANGANESE CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.76500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.76500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 362 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 516 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 649 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 HIS A -4 REMARK 465 ILE A -3 REMARK 465 GLU A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 498 2.09 REMARK 500 O HOH A 463 O HOH A 642 2.09 REMARK 500 O2G ATP A 501 O HOH A 341 2.10 REMARK 500 O THR A 125 O HOH A 585 2.16 REMARK 500 O HOH A 394 O HOH A 466 2.17 REMARK 500 O HOH A 580 O HOH A 628 2.17 REMARK 500 O HOH A 467 O HOH A 625 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 591 O HOH A 623 3555 2.09 REMARK 500 O HOH A 539 O HOH A 594 2655 2.18 REMARK 500 NZ LYS A 146 O HOH A 569 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 14 OE2 REMARK 620 2 HOH A 392 O 80.0 REMARK 620 3 HOH A 418 O 90.3 87.1 REMARK 620 4 ATP A 501 O1B 172.1 98.8 97.5 REMARK 620 5 ATP A 501 O1G 95.3 172.1 86.6 86.6 REMARK 620 6 ATP A 501 O2A 95.8 82.1 166.4 76.4 104.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QMH RELATED DB: PDB REMARK 900 RELATED ID: 1QMI RELATED DB: PDB REMARK 900 RELATED ID: 3KGD RELATED DB: PDB REMARK 900 RELATED ID: 3TUT RELATED DB: PDB REMARK 900 RELATED ID: 3TV1 RELATED DB: PDB REMARK 900 RELATED ID: 3TW3 RELATED DB: PDB DBREF 3TUX A 2 339 UNP P46849 RTCA_ECOLI 1 338 SEQADV 3TUX GLY A -18 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -17 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -16 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -15 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -14 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -13 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -12 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -11 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -10 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -9 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -8 UNP P46849 EXPRESSION TAG SEQADV 3TUX SER A -7 UNP P46849 EXPRESSION TAG SEQADV 3TUX SER A -6 UNP P46849 EXPRESSION TAG SEQADV 3TUX GLY A -5 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A -4 UNP P46849 EXPRESSION TAG SEQADV 3TUX ILE A -3 UNP P46849 EXPRESSION TAG SEQADV 3TUX GLU A -2 UNP P46849 EXPRESSION TAG SEQADV 3TUX GLY A -1 UNP P46849 EXPRESSION TAG SEQADV 3TUX ARG A 0 UNP P46849 EXPRESSION TAG SEQADV 3TUX HIS A 1 UNP P46849 EXPRESSION TAG SEQADV 3TUX SER A 308 UNP P46849 CYS 307 ENGINEERED MUTATION SEQADV 3TUX ASN A 309 UNP P46849 HIS 308 ENGINEERED MUTATION SEQRES 1 A 358 GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 358 GLY HIS ILE GLU GLY ARG HIS MET LYS ARG MET ILE ALA SEQRES 3 A 358 LEU ASP GLY ALA GLN GLY GLU GLY GLY GLY GLN ILE LEU SEQRES 4 A 358 ARG SER ALA LEU SER LEU SER MET ILE THR GLY GLN PRO SEQRES 5 A 358 PHE THR ILE THR SER ILE ARG ALA GLY ARG ALA LYS PRO SEQRES 6 A 358 GLY LEU LEU ARG GLN HIS LEU THR ALA VAL LYS ALA ALA SEQRES 7 A 358 THR GLU ILE CYS GLY ALA THR VAL GLU GLY ALA GLU LEU SEQRES 8 A 358 GLY SER GLN ARG LEU LEU PHE ARG PRO GLY THR VAL ARG SEQRES 9 A 358 GLY GLY ASP TYR ARG PHE ALA ILE GLY SER ALA GLY SER SEQRES 10 A 358 CYS THR LEU VAL LEU GLN THR VAL LEU PRO ALA LEU TRP SEQRES 11 A 358 PHE ALA ASP GLY PRO SER ARG VAL GLU VAL SER GLY GLY SEQRES 12 A 358 THR ASP ASN PRO SER ALA PRO PRO ALA ASP PHE ILE ARG SEQRES 13 A 358 ARG VAL LEU GLU PRO LEU LEU ALA LYS ILE GLY ILE HIS SEQRES 14 A 358 GLN GLN THR THR LEU LEU ARG HIS GLY PHE TYR PRO ALA SEQRES 15 A 358 GLY GLY GLY VAL VAL ALA THR GLU VAL SER PRO VAL ALA SEQRES 16 A 358 SER PHE ASN THR LEU GLN LEU GLY GLU ARG GLY ASN ILE SEQRES 17 A 358 VAL GLN MET ARG GLY GLU VAL LEU LEU ALA GLY VAL PRO SEQRES 18 A 358 ARG HIS VAL ALA GLU ARG GLU ILE ALA THR LEU ALA GLY SEQRES 19 A 358 SER PHE SER LEU HIS GLU GLN ASN ILE HIS ASN LEU PRO SEQRES 20 A 358 ARG ASP GLN GLY PRO GLY ASN THR VAL SER LEU GLU VAL SEQRES 21 A 358 GLU SER GLU ASN ILE THR GLU ARG PHE PHE VAL VAL GLY SEQRES 22 A 358 GLU LYS ARG VAL SER ALA GLU VAL VAL ALA ALA GLN LEU SEQRES 23 A 358 VAL LYS GLU VAL LYS ARG TYR LEU ALA SER THR ALA ALA SEQRES 24 A 358 VAL GLY GLU TYR LEU ALA ASP GLN LEU VAL LEU PRO MET SEQRES 25 A 358 ALA LEU ALA GLY ALA GLY GLU PHE THR VAL ALA HIS PRO SEQRES 26 A 358 SER SER ASN LEU LEU THR ASN ILE ALA VAL VAL GLU ARG SEQRES 27 A 358 PHE LEU PRO VAL ARG PHE SER LEU ILE GLU THR ASP GLY SEQRES 28 A 358 VAL THR ARG VAL SER ILE GLU HET ATP A 501 31 HET MN A 601 1 HET SO4 A 340 5 HET GOL A 502 6 HET EDO A 503 4 HET EDO A 504 4 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MN MN 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL C3 H8 O3 FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *306(H2 O) HELIX 1 1 GLY A 17 GLY A 31 1 15 HELIX 2 2 LEU A 49 GLY A 64 1 16 HELIX 3 3 SER A 98 TRP A 111 1 14 HELIX 4 4 PRO A 132 VAL A 139 1 8 HELIX 5 5 VAL A 139 GLY A 148 1 10 HELIX 6 6 PRO A 202 PHE A 217 1 16 HELIX 7 7 PRO A 228 GLY A 232 5 5 HELIX 8 8 SER A 259 ALA A 276 1 18 HELIX 9 9 GLY A 282 GLY A 297 1 16 HELIX 10 10 SER A 307 LEU A 321 1 15 SHEET 1 A 4 ILE A 6 ASP A 9 0 SHEET 2 A 4 PHE A 34 THR A 37 1 O THR A 35 N LEU A 8 SHEET 3 A 4 LEU A 77 ARG A 80 -1 O PHE A 79 N PHE A 34 SHEET 4 A 4 THR A 66 GLU A 68 -1 N THR A 66 O ARG A 80 SHEET 1 B 4 ASP A 88 ALA A 92 0 SHEET 2 B 4 SER A 117 GLY A 123 1 O ARG A 118 N TYR A 89 SHEET 3 B 4 GLY A 166 SER A 173 -1 O GLY A 166 N GLY A 123 SHEET 4 B 4 HIS A 150 ARG A 157 -1 N LEU A 156 O VAL A 167 SHEET 1 C 4 GLU A 221 LEU A 227 0 SHEET 2 C 4 ILE A 189 ALA A 199 1 N VAL A 196 O HIS A 225 SHEET 3 C 4 GLY A 234 SER A 243 -1 O GLU A 242 N VAL A 190 SHEET 4 C 4 THR A 247 VAL A 253 -1 O PHE A 250 N LEU A 239 SHEET 1 D 3 GLU A 300 VAL A 303 0 SHEET 2 D 3 VAL A 333 ILE A 338 -1 O VAL A 336 N PHE A 301 SHEET 3 D 3 PHE A 325 THR A 330 -1 N THR A 330 O VAL A 333 LINK OE2 GLU A 14 MN MN A 601 1555 1555 2.32 LINK O HOH A 392 MN MN A 601 1555 1555 2.41 LINK O HOH A 418 MN MN A 601 1555 1555 2.58 LINK O1B ATP A 501 MN MN A 601 1555 1555 2.27 LINK O1G ATP A 501 MN MN A 601 1555 1555 2.33 LINK O2A ATP A 501 MN MN A 601 1555 1555 2.37 CISPEP 1 TYR A 161 PRO A 162 0 4.28 CISPEP 2 GLY A 232 PRO A 233 0 0.25 SITE 1 AC1 25 GLU A 14 GLY A 16 GLY A 17 GLN A 18 SITE 2 AC1 25 ARG A 21 ARG A 40 ARG A 43 GLN A 104 SITE 3 AC1 25 SER A 129 ALA A 130 PRO A 131 PHE A 251 SITE 4 AC1 25 TYR A 284 ASP A 287 GLN A 288 ASN A 309 SITE 5 AC1 25 HOH A 341 HOH A 380 HOH A 386 HOH A 430 SITE 6 AC1 25 HOH A 567 HOH A 589 MN A 601 HOH A 603 SITE 7 AC1 25 HOH A 634 SITE 1 AC2 4 GLU A 14 HOH A 392 HOH A 418 ATP A 501 SITE 1 AC3 4 LYS A 45 ARG A 50 SER A 95 HOH A 414 SITE 1 AC4 7 THR A 35 THR A 37 ARG A 76 ASP A 88 SITE 2 AC4 7 PRO A 116 SER A 117 ARG A 118 SITE 1 AC5 6 GLN A 104 ILE A 136 LEU A 140 GLN A 288 SITE 2 AC5 6 HOH A 445 HOH A 625 SITE 1 AC6 3 ARG A 137 ARG A 138 HOH A 647 CRYST1 69.530 83.060 52.080 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019201 0.00000