HEADER TRANSFERASE 19-SEP-11 3TV1 TITLE CRYSTAL STRUCTURE OF RTCA.AMP PRODUCT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA 3'-TERMINAL PHOSPHATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNA CYCLASE, RNA-3'-PHOSPHATE CYCLASE; COMPND 5 EC: 6.5.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B4475, JW5688, RTCA, YHGJ, YHGK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIZING 3'-PHOSPHATE ENDS, TRANSFERASE, CYCLASE FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR A.K.CHAKRAVARTY,P.SMITH,S.SHUMAN REVDAT 4 13-SEP-23 3TV1 1 REMARK SEQADV REVDAT 3 18-JAN-12 3TV1 1 JRNL REVDAT 2 11-JAN-12 3TV1 1 REMARK REVDAT 1 28-DEC-11 3TV1 0 JRNL AUTH A.K.CHAKRAVARTY,P.SMITH,S.SHUMAN JRNL TITL STRUCTURES OF RNA 3'-PHOSPHATE CYCLASE BOUND TO ATP REVEAL JRNL TITL 2 THE MECHANISM OF NUCLEOTIDYL TRANSFER AND METAL-ASSISTED JRNL TITL 3 CATALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 21034 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22167800 JRNL DOI 10.1073/PNAS.1115560108 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 52827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9140 - 5.0658 1.00 2760 150 0.1893 0.2339 REMARK 3 2 5.0658 - 4.0225 1.00 2714 146 0.1420 0.1788 REMARK 3 3 4.0225 - 3.5145 1.00 2716 139 0.1596 0.1742 REMARK 3 4 3.5145 - 3.1933 1.00 2707 134 0.1817 0.1990 REMARK 3 5 3.1933 - 2.9646 0.99 2657 137 0.1981 0.2313 REMARK 3 6 2.9646 - 2.7898 0.99 2662 153 0.2049 0.2811 REMARK 3 7 2.7898 - 2.6502 0.99 2677 146 0.1984 0.2746 REMARK 3 8 2.6502 - 2.5348 1.00 2680 148 0.1878 0.2634 REMARK 3 9 2.5348 - 2.4373 0.99 2658 136 0.1822 0.2652 REMARK 3 10 2.4373 - 2.3532 1.00 2651 150 0.1886 0.2764 REMARK 3 11 2.3532 - 2.2796 1.00 2701 126 0.1841 0.2568 REMARK 3 12 2.2796 - 2.2145 0.98 2634 145 0.1739 0.2313 REMARK 3 13 2.2145 - 2.1562 1.00 2666 150 0.1778 0.2676 REMARK 3 14 2.1562 - 2.1036 0.99 2661 135 0.1731 0.2289 REMARK 3 15 2.1036 - 2.0558 0.99 2665 142 0.1838 0.2529 REMARK 3 16 2.0558 - 2.0120 0.98 2595 149 0.1856 0.2577 REMARK 3 17 2.0120 - 1.9718 0.97 2602 138 0.1857 0.2647 REMARK 3 18 1.9718 - 1.9346 0.93 2483 119 0.1993 0.2920 REMARK 3 19 1.9346 - 1.9000 0.85 2273 122 0.2083 0.2586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 36.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33400 REMARK 3 B22 (A**2) : 6.02380 REMARK 3 B33 (A**2) : -6.35780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.13770 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5318 REMARK 3 ANGLE : 1.103 7275 REMARK 3 CHIRALITY : 0.067 860 REMARK 3 PLANARITY : 0.004 946 REMARK 3 DIHEDRAL : 12.943 1952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000067954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 36.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3KGD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG5000 MME, 150 MM AMMONIUM REMARK 280 SULFATE, 100 MM MES PH6.5, 10 MM AMP, 15 MM SODIUM PYROPHOSPHATE, REMARK 280 30 MM MANGANESE CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.90500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 HIS A -4 REMARK 465 ILE A -3 REMARK 465 GLU A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 GLY B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 HIS B -4 REMARK 465 ILE B -3 REMARK 465 GLU B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 LYS B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP B 9 N CA C O CB CG OD1 REMARK 480 ASP B 9 OD2 REMARK 480 GLY B 10 N CA C O REMARK 480 ALA B 11 N CA C O CB REMARK 480 VAL B 323 CA CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 340 O HOH A 496 1.34 REMARK 500 OG SER B 25 O HOH B 694 1.89 REMARK 500 O HOH B 412 O HOH B 495 1.89 REMARK 500 O HOH B 423 O HOH B 455 1.94 REMARK 500 NH1 ARG A 4 O HOH A 585 1.99 REMARK 500 O HOH B 560 O HOH B 671 1.99 REMARK 500 O HOH A 366 O HOH A 394 2.02 REMARK 500 O HOH A 727 O HOH A 730 2.04 REMARK 500 NH1 ARG A 157 O HOH A 423 2.04 REMARK 500 O HOH A 482 O HOH A 647 2.04 REMARK 500 O HOH A 513 O HOH A 624 2.08 REMARK 500 O HOH A 455 O HOH A 654 2.09 REMARK 500 O HOH B 534 O HOH B 640 2.09 REMARK 500 O HOH A 460 O HOH A 472 2.09 REMARK 500 O HOH A 452 O HOH A 477 2.11 REMARK 500 O HOH B 519 O HOH B 581 2.11 REMARK 500 O3 GOL A 951 O HOH A 678 2.12 REMARK 500 O HOH A 484 O HOH A 660 2.12 REMARK 500 O HOH A 390 O HOH A 670 2.12 REMARK 500 O HOH A 352 O HOH A 444 2.12 REMARK 500 O HOH B 586 O HOH B 592 2.13 REMARK 500 O4 SO4 B 804 O HOH B 823 2.13 REMARK 500 O HOH B 353 O HOH B 435 2.13 REMARK 500 NE2 GLN A 182 O HOH A 537 2.14 REMARK 500 O HOH B 409 O HOH B 469 2.15 REMARK 500 O3 SO4 A 803 O HOH A 805 2.15 REMARK 500 O HOH A 489 O HOH A 650 2.16 REMARK 500 ND1 HIS A 305 O HOH A 402 2.16 REMARK 500 O HOH B 496 O HOH B 635 2.16 REMARK 500 O HOH A 347 O HOH A 425 2.17 REMARK 500 CL CL B 851 O2 PEG B 991 2.17 REMARK 500 O HOH A 419 O HOH A 628 2.18 REMARK 500 O HOH A 716 O HOH A 717 2.18 REMARK 500 O HOH A 417 O HOH A 576 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 381 O HOH A 507 2445 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 322 44.51 -74.91 REMARK 500 TYR B 161 133.75 -39.41 REMARK 500 PRO B 322 44.46 -80.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG B 991 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 851 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 951 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 991 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QMH RELATED DB: PDB REMARK 900 RELATED ID: 1QMI RELATED DB: PDB REMARK 900 RELATED ID: 3KGD RELATED DB: PDB REMARK 900 RELATED ID: 3TUT RELATED DB: PDB REMARK 900 RELATED ID: 3TUX RELATED DB: PDB REMARK 900 RELATED ID: 3TW3 RELATED DB: PDB DBREF 3TV1 A 2 339 UNP P46849 RTCA_ECOLI 1 338 DBREF 3TV1 B 2 339 UNP P46849 RTCA_ECOLI 1 338 SEQADV 3TV1 GLY A -18 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -17 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -16 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -15 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -14 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -13 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -12 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -11 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -10 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -9 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -8 UNP P46849 EXPRESSION TAG SEQADV 3TV1 SER A -7 UNP P46849 EXPRESSION TAG SEQADV 3TV1 SER A -6 UNP P46849 EXPRESSION TAG SEQADV 3TV1 GLY A -5 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A -4 UNP P46849 EXPRESSION TAG SEQADV 3TV1 ILE A -3 UNP P46849 EXPRESSION TAG SEQADV 3TV1 GLU A -2 UNP P46849 EXPRESSION TAG SEQADV 3TV1 GLY A -1 UNP P46849 EXPRESSION TAG SEQADV 3TV1 ARG A 0 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS A 1 UNP P46849 EXPRESSION TAG SEQADV 3TV1 SER A 308 UNP P46849 CYS 307 ENGINEERED MUTATION SEQADV 3TV1 ASN A 309 UNP P46849 HIS 308 ENGINEERED MUTATION SEQADV 3TV1 GLY B -18 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -17 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -16 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -15 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -14 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -13 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -12 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -11 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -10 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -9 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -8 UNP P46849 EXPRESSION TAG SEQADV 3TV1 SER B -7 UNP P46849 EXPRESSION TAG SEQADV 3TV1 SER B -6 UNP P46849 EXPRESSION TAG SEQADV 3TV1 GLY B -5 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B -4 UNP P46849 EXPRESSION TAG SEQADV 3TV1 ILE B -3 UNP P46849 EXPRESSION TAG SEQADV 3TV1 GLU B -2 UNP P46849 EXPRESSION TAG SEQADV 3TV1 GLY B -1 UNP P46849 EXPRESSION TAG SEQADV 3TV1 ARG B 0 UNP P46849 EXPRESSION TAG SEQADV 3TV1 HIS B 1 UNP P46849 EXPRESSION TAG SEQADV 3TV1 SER B 308 UNP P46849 CYS 307 ENGINEERED MUTATION SEQADV 3TV1 ASN B 309 UNP P46849 HIS 308 ENGINEERED MUTATION SEQRES 1 A 358 GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 358 GLY HIS ILE GLU GLY ARG HIS MET LYS ARG MET ILE ALA SEQRES 3 A 358 LEU ASP GLY ALA GLN GLY GLU GLY GLY GLY GLN ILE LEU SEQRES 4 A 358 ARG SER ALA LEU SER LEU SER MET ILE THR GLY GLN PRO SEQRES 5 A 358 PHE THR ILE THR SER ILE ARG ALA GLY ARG ALA LYS PRO SEQRES 6 A 358 GLY LEU LEU ARG GLN HIS LEU THR ALA VAL LYS ALA ALA SEQRES 7 A 358 THR GLU ILE CYS GLY ALA THR VAL GLU GLY ALA GLU LEU SEQRES 8 A 358 GLY SER GLN ARG LEU LEU PHE ARG PRO GLY THR VAL ARG SEQRES 9 A 358 GLY GLY ASP TYR ARG PHE ALA ILE GLY SER ALA GLY SER SEQRES 10 A 358 CYS THR LEU VAL LEU GLN THR VAL LEU PRO ALA LEU TRP SEQRES 11 A 358 PHE ALA ASP GLY PRO SER ARG VAL GLU VAL SER GLY GLY SEQRES 12 A 358 THR ASP ASN PRO SER ALA PRO PRO ALA ASP PHE ILE ARG SEQRES 13 A 358 ARG VAL LEU GLU PRO LEU LEU ALA LYS ILE GLY ILE HIS SEQRES 14 A 358 GLN GLN THR THR LEU LEU ARG HIS GLY PHE TYR PRO ALA SEQRES 15 A 358 GLY GLY GLY VAL VAL ALA THR GLU VAL SER PRO VAL ALA SEQRES 16 A 358 SER PHE ASN THR LEU GLN LEU GLY GLU ARG GLY ASN ILE SEQRES 17 A 358 VAL GLN MET ARG GLY GLU VAL LEU LEU ALA GLY VAL PRO SEQRES 18 A 358 ARG HIS VAL ALA GLU ARG GLU ILE ALA THR LEU ALA GLY SEQRES 19 A 358 SER PHE SER LEU HIS GLU GLN ASN ILE HIS ASN LEU PRO SEQRES 20 A 358 ARG ASP GLN GLY PRO GLY ASN THR VAL SER LEU GLU VAL SEQRES 21 A 358 GLU SER GLU ASN ILE THR GLU ARG PHE PHE VAL VAL GLY SEQRES 22 A 358 GLU LYS ARG VAL SER ALA GLU VAL VAL ALA ALA GLN LEU SEQRES 23 A 358 VAL LYS GLU VAL LYS ARG TYR LEU ALA SER THR ALA ALA SEQRES 24 A 358 VAL GLY GLU TYR LEU ALA ASP GLN LEU VAL LEU PRO MET SEQRES 25 A 358 ALA LEU ALA GLY ALA GLY GLU PHE THR VAL ALA HIS PRO SEQRES 26 A 358 SER SER ASN LEU LEU THR ASN ILE ALA VAL VAL GLU ARG SEQRES 27 A 358 PHE LEU PRO VAL ARG PHE SER LEU ILE GLU THR ASP GLY SEQRES 28 A 358 VAL THR ARG VAL SER ILE GLU SEQRES 1 B 358 GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 B 358 GLY HIS ILE GLU GLY ARG HIS MET LYS ARG MET ILE ALA SEQRES 3 B 358 LEU ASP GLY ALA GLN GLY GLU GLY GLY GLY GLN ILE LEU SEQRES 4 B 358 ARG SER ALA LEU SER LEU SER MET ILE THR GLY GLN PRO SEQRES 5 B 358 PHE THR ILE THR SER ILE ARG ALA GLY ARG ALA LYS PRO SEQRES 6 B 358 GLY LEU LEU ARG GLN HIS LEU THR ALA VAL LYS ALA ALA SEQRES 7 B 358 THR GLU ILE CYS GLY ALA THR VAL GLU GLY ALA GLU LEU SEQRES 8 B 358 GLY SER GLN ARG LEU LEU PHE ARG PRO GLY THR VAL ARG SEQRES 9 B 358 GLY GLY ASP TYR ARG PHE ALA ILE GLY SER ALA GLY SER SEQRES 10 B 358 CYS THR LEU VAL LEU GLN THR VAL LEU PRO ALA LEU TRP SEQRES 11 B 358 PHE ALA ASP GLY PRO SER ARG VAL GLU VAL SER GLY GLY SEQRES 12 B 358 THR ASP ASN PRO SER ALA PRO PRO ALA ASP PHE ILE ARG SEQRES 13 B 358 ARG VAL LEU GLU PRO LEU LEU ALA LYS ILE GLY ILE HIS SEQRES 14 B 358 GLN GLN THR THR LEU LEU ARG HIS GLY PHE TYR PRO ALA SEQRES 15 B 358 GLY GLY GLY VAL VAL ALA THR GLU VAL SER PRO VAL ALA SEQRES 16 B 358 SER PHE ASN THR LEU GLN LEU GLY GLU ARG GLY ASN ILE SEQRES 17 B 358 VAL GLN MET ARG GLY GLU VAL LEU LEU ALA GLY VAL PRO SEQRES 18 B 358 ARG HIS VAL ALA GLU ARG GLU ILE ALA THR LEU ALA GLY SEQRES 19 B 358 SER PHE SER LEU HIS GLU GLN ASN ILE HIS ASN LEU PRO SEQRES 20 B 358 ARG ASP GLN GLY PRO GLY ASN THR VAL SER LEU GLU VAL SEQRES 21 B 358 GLU SER GLU ASN ILE THR GLU ARG PHE PHE VAL VAL GLY SEQRES 22 B 358 GLU LYS ARG VAL SER ALA GLU VAL VAL ALA ALA GLN LEU SEQRES 23 B 358 VAL LYS GLU VAL LYS ARG TYR LEU ALA SER THR ALA ALA SEQRES 24 B 358 VAL GLY GLU TYR LEU ALA ASP GLN LEU VAL LEU PRO MET SEQRES 25 B 358 ALA LEU ALA GLY ALA GLY GLU PHE THR VAL ALA HIS PRO SEQRES 26 B 358 SER SER ASN LEU LEU THR ASN ILE ALA VAL VAL GLU ARG SEQRES 27 B 358 PHE LEU PRO VAL ARG PHE SER LEU ILE GLU THR ASP GLY SEQRES 28 B 358 VAL THR ARG VAL SER ILE GLU HET AMP A 401 23 HET SO4 A 802 5 HET SO4 A 803 5 HET EDO A 901 4 HET GOL A 951 6 HET AMP B 401 23 HET SO4 B 801 5 HET SO4 B 804 5 HET CL B 851 1 HET PEG B 991 4 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 SO4 4(O4 S 2-) FORMUL 6 EDO C2 H6 O2 FORMUL 7 GOL C3 H8 O3 FORMUL 11 CL CL 1- FORMUL 12 PEG C4 H10 O3 FORMUL 13 HOH *731(H2 O) HELIX 1 1 GLY A 17 GLY A 31 1 15 HELIX 2 2 LEU A 49 GLY A 64 1 16 HELIX 3 3 CYS A 99 TRP A 111 1 13 HELIX 4 4 PRO A 132 VAL A 139 1 8 HELIX 5 5 VAL A 139 GLY A 148 1 10 HELIX 6 6 PRO A 202 PHE A 217 1 16 HELIX 7 7 PRO A 228 GLY A 232 5 5 HELIX 8 8 SER A 259 ALA A 276 1 18 HELIX 9 9 GLY A 282 GLY A 297 1 16 HELIX 10 10 SER A 307 LEU A 321 1 15 HELIX 11 11 GLY B 17 GLY B 31 1 15 HELIX 12 12 LEU B 49 GLY B 64 1 16 HELIX 13 13 CYS B 99 TRP B 111 1 13 HELIX 14 14 PRO B 132 VAL B 139 1 8 HELIX 15 15 VAL B 139 GLY B 148 1 10 HELIX 16 16 ARG B 203 PHE B 217 1 15 HELIX 17 17 PRO B 228 GLY B 232 5 5 HELIX 18 18 SER B 259 ALA B 276 1 18 HELIX 19 19 GLY B 282 GLY B 297 1 16 HELIX 20 20 SER B 307 LEU B 321 1 15 SHEET 1 A 4 ILE A 6 ASP A 9 0 SHEET 2 A 4 PHE A 34 THR A 37 1 O THR A 35 N LEU A 8 SHEET 3 A 4 ARG A 76 ARG A 80 -1 O PHE A 79 N PHE A 34 SHEET 4 A 4 THR A 66 GLU A 68 -1 N GLU A 68 O LEU A 78 SHEET 1 B 4 GLY A 87 SER A 98 0 SHEET 2 B 4 SER A 117 GLY A 124 1 O SER A 122 N ILE A 93 SHEET 3 B 4 GLY A 166 SER A 173 -1 O VAL A 172 N SER A 117 SHEET 4 B 4 HIS A 150 ARG A 157 -1 N LEU A 156 O VAL A 167 SHEET 1 C 8 THR A 247 VAL A 253 0 SHEET 2 C 8 GLY A 234 SER A 243 -1 N LEU A 239 O PHE A 250 SHEET 3 C 8 ILE A 189 ALA A 199 -1 N VAL A 190 O GLU A 242 SHEET 4 C 8 GLU A 221 LEU A 227 1 O LEU A 227 N LEU A 198 SHEET 5 C 8 GLU B 221 LEU B 227 -1 O ILE B 224 N GLN A 222 SHEET 6 C 8 ILE B 189 ALA B 199 1 N LEU B 198 O LEU B 227 SHEET 7 C 8 GLY B 234 SER B 243 -1 O GLU B 242 N VAL B 190 SHEET 8 C 8 THR B 247 VAL B 253 -1 O PHE B 250 N LEU B 239 SHEET 1 D 3 GLU A 300 VAL A 303 0 SHEET 2 D 3 VAL A 333 ILE A 338 -1 O VAL A 336 N PHE A 301 SHEET 3 D 3 PHE A 325 THR A 330 -1 N SER A 326 O SER A 337 SHEET 1 E 4 ILE B 6 ASP B 9 0 SHEET 2 E 4 PHE B 34 THR B 37 1 O THR B 35 N LEU B 8 SHEET 3 E 4 LEU B 77 ARG B 80 -1 O PHE B 79 N PHE B 34 SHEET 4 E 4 THR B 66 GLU B 68 -1 N GLU B 68 O LEU B 78 SHEET 1 F 4 ASP B 88 SER B 98 0 SHEET 2 F 4 SER B 117 GLY B 124 1 O ARG B 118 N TYR B 89 SHEET 3 F 4 GLY B 166 SER B 173 -1 O VAL B 172 N SER B 117 SHEET 4 F 4 HIS B 150 ARG B 157 -1 N THR B 154 O ALA B 169 SHEET 1 G 4 LEU B 181 GLN B 182 0 SHEET 2 G 4 GLY B 299 VAL B 303 1 O GLU B 300 N LEU B 181 SHEET 3 G 4 VAL B 333 ILE B 338 -1 O VAL B 336 N PHE B 301 SHEET 4 G 4 PHE B 325 THR B 330 -1 N SER B 326 O SER B 337 CISPEP 1 TYR A 161 PRO A 162 0 7.06 CISPEP 2 GLY A 232 PRO A 233 0 3.67 CISPEP 3 TYR B 161 PRO B 162 0 9.48 CISPEP 4 GLY B 232 PRO B 233 0 2.74 SITE 1 AC1 15 ARG A 21 GLN A 104 SER A 129 ALA A 130 SITE 2 AC1 15 PRO A 131 PHE A 251 TYR A 284 ASP A 287 SITE 3 AC1 15 GLN A 288 ASN A 309 HOH A 428 HOH A 509 SITE 4 AC1 15 HOH A 538 HOH A 565 HOH A 566 SITE 1 AC2 15 ARG B 21 GLN B 104 SER B 129 ALA B 130 SITE 2 AC2 15 PRO B 131 PHE B 135 PHE B 251 TYR B 284 SITE 3 AC2 15 ASP B 287 GLN B 288 ASN B 309 HOH B 359 SITE 4 AC2 15 HOH B 389 HOH B 477 HOH B 624 SITE 1 AC3 7 HIS B 158 LEU B 197 HIS B 225 HOH B 461 SITE 2 AC3 7 HOH B 537 HOH B 866 HOH B 890 SITE 1 AC4 8 HIS A 158 LEU A 197 HIS A 225 HOH A 502 SITE 2 AC4 8 HOH A 526 HOH A 541 HOH A 827 HOH A 828 SITE 1 AC5 6 GLU A 14 ARG A 43 HOH A 657 HOH A 805 SITE 2 AC5 6 HOH A 862 HOH A 878 SITE 1 AC6 6 GLU B 14 ARG B 43 HOH B 575 HOH B 614 SITE 2 AC6 6 HOH B 823 HOH B 865 SITE 1 AC7 5 THR B 125 ASP B 126 ALA B 133 HOH B 728 SITE 2 AC7 5 PEG B 991 SITE 1 AC8 3 ARG A 137 ARG A 138 ARG A 193 SITE 1 AC9 5 GLU A 207 ILE A 210 ALA A 211 HOH A 678 SITE 2 AC9 5 HOH A 872 SITE 1 BC1 8 ASP B 126 PRO B 132 ALA B 133 ASP B 134 SITE 2 BC1 8 LEU B 155 HOH B 666 CL B 851 HOH B 890 CRYST1 52.160 79.810 85.670 90.00 103.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019172 0.000000 0.004656 0.00000 SCALE2 0.000000 0.012530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012012 0.00000