HEADER LYASE 19-SEP-11 3TV2 TITLE STRUCTURE OF A CLASS II FUMARATE HYDRATASE FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARATE HYDRATASE, CLASS II; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 145-603; COMPND 5 EC: 4.2.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: FUMC, BURPS1710B_2940; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 FUMARASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-SEP-23 3TV2 1 REMARK LINK REVDAT 1 28-SEP-11 3TV2 0 JRNL AUTH M.C.CLIFTON,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID),B.SANKARAN JRNL TITL STRUCTURE OF A CLASS II FUMARATE HYDRATASE FROM BURKHOLDERIA JRNL TITL 2 PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 76047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3841 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 274 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 461 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.675 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3497 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2288 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4766 ; 1.344 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5594 ; 0.982 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 5.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;37.854 ;24.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;12.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4023 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 698 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1226 73.8550 1.8186 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.1514 REMARK 3 T33: 0.1648 T12: -0.0211 REMARK 3 T13: -0.1935 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 4.3916 L22: 5.4315 REMARK 3 L33: 4.0880 L12: -3.8862 REMARK 3 L13: 2.3469 L23: 0.2634 REMARK 3 S TENSOR REMARK 3 S11: -0.5047 S12: -0.2675 S13: 0.3741 REMARK 3 S21: 0.1687 S22: 0.3106 S23: -0.2191 REMARK 3 S31: -0.4202 S32: -0.0549 S33: 0.1941 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9168 59.5251 5.1065 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1418 REMARK 3 T33: 0.0616 T12: 0.0521 REMARK 3 T13: -0.0458 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.0234 L22: 0.4644 REMARK 3 L33: 0.8338 L12: 0.6312 REMARK 3 L13: 0.4269 L23: 0.2720 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: 0.1264 S13: 0.0082 REMARK 3 S21: -0.1084 S22: 0.0687 S23: 0.0144 REMARK 3 S31: -0.0687 S32: -0.0374 S33: -0.0305 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 465 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3385 46.7441 25.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0807 REMARK 3 T33: 0.0969 T12: 0.0398 REMARK 3 T13: -0.0112 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.0251 L22: 0.1931 REMARK 3 L33: 0.3506 L12: -0.2526 REMARK 3 L13: 0.4101 L23: -0.1288 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0382 S13: -0.0324 REMARK 3 S21: -0.0829 S22: -0.0278 S23: 0.0009 REMARK 3 S31: 0.0881 S32: 0.0093 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 466 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 53.2053 43.3680 36.0635 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0934 REMARK 3 T33: 0.1116 T12: 0.0801 REMARK 3 T13: 0.0159 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.5453 L22: 0.4636 REMARK 3 L33: 0.0771 L12: -0.2451 REMARK 3 L13: 0.0972 L23: -0.0819 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: -0.0350 S13: -0.0488 REMARK 3 S21: 0.0602 S22: 0.0203 S23: -0.0605 REMARK 3 S31: 0.0304 S32: 0.0003 S33: 0.0473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 99.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1YFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 6.5, 20% PEG3350, PROTEIN 18.9 MG/ML, 25% ETHYLENE REMARK 280 GLYCOL CRYOPROTECTANT, TARGETDB ID: BUPSA.00047.A.D13 PD00173, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.42667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.85333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.42667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 138.85333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.42667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 138.85333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.42667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 138.85333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -220.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.59000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 127.46162 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 69.42667 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 73.59000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 127.46162 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 69.42667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 31 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 41 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 602 REMARK 465 ARG A 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 566 CG CD CE NZ REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 LEU A 580 CG CD1 CD2 REMARK 470 GLU A 592 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 269 CG HIS A 269 CD2 0.063 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 176 -149.12 56.68 REMARK 500 LEU A 329 -0.49 79.98 REMARK 500 THR A 370 -136.92 53.31 REMARK 500 SER A 459 -49.61 83.02 REMARK 500 MET A 461 58.30 -112.94 REMARK 500 PHE A 496 -119.61 54.19 REMARK 500 CYS A 527 -66.34 -138.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 462 GLY A 463 -40.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 UNL A 604 UNL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 279 OG REMARK 620 2 SER A 280 N 53.5 REMARK 620 3 SER A 280 OG 99.3 48.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.00047.A RELATED DB: TARGETDB DBREF 3TV2 A 145 603 UNP Q3JQ34 Q3JQ34_BURP1 145 603 SEQRES 1 A 459 ARG MET GLU ARG ASP THR PHE GLY GLU ILE ALA VAL PRO SEQRES 2 A 459 ALA ALA ARG LEU TRP GLY ALA GLN THR GLN ARG SER LEU SEQRES 3 A 459 GLN ASN PHE LYS ILE SER THR GLU LYS GLN SER PRO GLU SEQRES 4 A 459 LEU ILE HIS ALA LEU ALA LEU ILE LYS ARG ALA ALA ALA SEQRES 5 A 459 ALA VAL ASN LEU GLU LEU GLY VAL LEU ALA GLN ASP LYS SEQRES 6 A 459 ALA ASN ALA ILE VAL ALA ALA ALA ASP GLU ILE ILE ALA SEQRES 7 A 459 GLY ARG HIS ALA ASP GLU PHE PRO LEU ALA VAL TRP GLN SEQRES 8 A 459 THR GLY SER GLY THR GLN THR ASN MET ASN LEU ASN GLU SEQRES 9 A 459 VAL ILE ALA ASN ARG ALA SER GLU LEU LEU GLY GLY GLU SEQRES 10 A 459 ARG GLY GLU SER ARG ALA VAL HIS PRO ASN ASP ASP VAL SEQRES 11 A 459 ASN ARG GLY GLN SER SER ASN ASP VAL PHE PRO THR ALA SEQRES 12 A 459 MET HIS ILE ALA ALA ALA ARG ALA ILE VAL ASP HIS LEU SEQRES 13 A 459 LEU PRO ALA LEU ARG THR LEU ARG ALA THR LEU ASP ALA SEQRES 14 A 459 LYS ALA ALA ALA PHE ALA ASP ILE VAL LYS ILE GLY ARG SEQRES 15 A 459 THR HIS LEU GLN ASP ALA THR PRO LEU THR LEU GLY GLN SEQRES 16 A 459 GLU PHE SER GLY TYR VAL ALA GLN LEU ASP GLN GLY ILE SEQRES 17 A 459 ARG HIS VAL GLU ALA ALA LEU PRO HIS LEU TYR GLU LEU SEQRES 18 A 459 ALA GLN GLY GLY THR ALA VAL GLY THR GLY LEU ASN ALA SEQRES 19 A 459 HIS PRO LYS PHE ALA ALA GLY VAL ALA ALA GLU ILE GLY SEQRES 20 A 459 ARG LEU THR GLY LEU PRO PHE VAL SER ALA PRO ASN LYS SEQRES 21 A 459 PHE GLU VAL MET ALA ALA ALA ASP ALA LEU VAL PHE ALA SEQRES 22 A 459 HIS GLY ALA LEU LYS THR VAL ALA ALA SER LEU MET LYS SEQRES 23 A 459 ILE ALA ASN ASP ILE ARG TRP LEU ALA SER GLY PRO ARG SEQRES 24 A 459 CYS GLY LEU GLY GLU LEU SER ILE PRO GLU ASN GLU PRO SEQRES 25 A 459 GLY SER SER ILE MET PRO GLY LYS VAL ASN PRO THR GLN SEQRES 26 A 459 SER GLU ALA VAL THR MET LEU CYS CYS GLN VAL PHE GLY SEQRES 27 A 459 ASN ASP VAL ALA VAL ASN PHE GLY GLY ALA SER GLY ASN SEQRES 28 A 459 PHE GLU LEU ASN VAL PHE ARG PRO MET ILE ALA HIS ASN SEQRES 29 A 459 VAL LEU GLN SER VAL ARG LEU LEU ALA ASP GLY ALA GLN SEQRES 30 A 459 GLY PHE ASN ASP HIS CYS ALA VAL GLY ILE GLU PRO ASN SEQRES 31 A 459 ARG ALA ARG ILE ASP ALA LEU LEU ASN GLU SER LEU MET SEQRES 32 A 459 LEU VAL THR ALA LEU ASN PRO HIS ILE GLY TYR ASP LYS SEQRES 33 A 459 ALA ALA GLN ILE ALA LYS LYS ALA HIS LYS GLU GLY THR SEQRES 34 A 459 THR LEU LYS ALA ALA ALA LEU ALA LEU GLY TYR VAL THR SEQRES 35 A 459 ASP ALA GLN PHE ASP GLU TRP VAL ARG PRO GLU HIS MET SEQRES 36 A 459 VAL GLY ASN ARG HET NA A 1 1 HET UNL A 604 1 HETNAM NA SODIUM ION HETNAM UNL UNKNOWN LIGAND FORMUL 2 NA NA 1+ FORMUL 4 HOH *461(H2 O) HELIX 1 1 GLY A 163 SER A 169 1 7 HELIX 2 2 SER A 181 LEU A 202 1 22 HELIX 3 3 ALA A 206 ALA A 222 1 17 HELIX 4 4 GLY A 239 LEU A 258 1 20 HELIX 5 5 SER A 279 HIS A 299 1 21 HELIX 6 6 HIS A 299 PHE A 318 1 20 HELIX 7 7 LEU A 337 ALA A 357 1 21 HELIX 8 8 ALA A 358 TYR A 363 1 6 HELIX 9 9 LYS A 381 GLY A 395 1 15 HELIX 10 10 ASN A 403 ALA A 410 1 8 HELIX 11 11 ALA A 411 ALA A 439 1 29 HELIX 12 12 PRO A 467 ALA A 492 1 26 HELIX 13 13 PHE A 501 CYS A 527 1 27 HELIX 14 14 ALA A 528 ILE A 531 5 4 HELIX 15 15 ASN A 534 SER A 545 1 12 HELIX 16 16 LEU A 546 ALA A 551 5 6 HELIX 17 17 LEU A 552 GLY A 557 1 6 HELIX 18 18 GLY A 557 GLY A 572 1 16 HELIX 19 19 THR A 574 LEU A 582 1 9 HELIX 20 20 THR A 586 VAL A 594 1 9 HELIX 21 21 ARG A 595 MET A 599 5 5 SHEET 1 A 2 MET A 146 ASP A 149 0 SHEET 2 A 2 GLY A 152 ALA A 155 -1 O GLY A 152 N ASP A 149 SHEET 1 B 2 VAL A 322 THR A 327 0 SHEET 2 B 2 GLN A 330 THR A 336 -1 O LEU A 335 N LYS A 323 SHEET 1 C 2 GLU A 364 LEU A 365 0 SHEET 2 C 2 VAL A 399 SER A 400 1 O VAL A 399 N LEU A 365 SHEET 1 D 2 LEU A 449 SER A 450 0 SHEET 2 D 2 GLU A 532 PRO A 533 -1 O GLU A 532 N SER A 450 LINK NA NA A 1 O HOH A 852 1555 1555 3.16 LINK OG SER A 279 UNL UNL A 604 1555 1555 3.41 LINK N SER A 280 UNL UNL A 604 1555 1555 3.34 LINK OG SER A 280 UNL UNL A 604 1555 1555 3.77 CISPEP 1 GLY A 441 PRO A 442 0 10.00 SITE 1 AC1 2 TYR A 558 ASP A 559 CRYST1 147.180 147.180 208.280 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006794 0.003923 0.000000 0.00000 SCALE2 0.000000 0.007845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004801 0.00000