HEADER PEPTIDE BINDING PROTEIN 19-SEP-11 3TV9 TITLE CRYSTAL STRUCTURE OF PUTATIVE PEPTIDE MATURATION PROTEIN FROM SHIGELLA TITLE 2 FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PEPTIDE MATURATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 15-447; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 STRAIN: 2457T; SOURCE 5 GENE: PMBA, S4517; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ALPHA-BETA, CYTOSOL, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.GU,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 28-DEC-16 3TV9 1 JRNL REVDAT 1 05-OCT-11 3TV9 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.GU,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PEPTIDE MATURATION PROTEIN JRNL TITL 2 FROM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_851) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 16043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1310 - 5.5494 0.99 1453 162 0.2142 0.2762 REMARK 3 2 5.5494 - 4.4061 1.00 1383 149 0.1559 0.2016 REMARK 3 3 4.4061 - 3.8496 0.99 1348 141 0.1377 0.1904 REMARK 3 4 3.8496 - 3.4978 0.99 1343 162 0.1635 0.1917 REMARK 3 5 3.4978 - 3.2472 0.99 1327 148 0.1933 0.2640 REMARK 3 6 3.2472 - 3.0558 0.97 1296 142 0.2076 0.2921 REMARK 3 7 3.0558 - 2.9028 0.97 1299 144 0.2271 0.2737 REMARK 3 8 2.9028 - 2.7764 0.96 1267 147 0.2229 0.3116 REMARK 3 9 2.7764 - 2.6696 0.95 1282 130 0.2291 0.3380 REMARK 3 10 2.6696 - 2.5774 0.94 1248 145 0.2326 0.3221 REMARK 3 11 2.5774 - 2.4969 0.91 1205 122 0.2522 0.3569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 46.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.65490 REMARK 3 B22 (A**2) : -9.03750 REMARK 3 B33 (A**2) : -0.61750 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3398 REMARK 3 ANGLE : 1.226 4600 REMARK 3 CHIRALITY : 0.096 517 REMARK 3 PLANARITY : 0.007 596 REMARK 3 DIHEDRAL : 15.425 1229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 10:50) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7783 33.8009 32.0144 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.2540 REMARK 3 T33: 0.2294 T12: 0.0221 REMARK 3 T13: 0.0451 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.2826 L22: 4.3888 REMARK 3 L33: 4.7652 L12: -1.0965 REMARK 3 L13: -0.0706 L23: 2.4001 REMARK 3 S TENSOR REMARK 3 S11: -0.1912 S12: -0.0894 S13: -0.1204 REMARK 3 S21: 0.2542 S22: 0.0337 S23: -0.1304 REMARK 3 S31: 0.1985 S32: -0.2076 S33: 0.2225 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 51:113) REMARK 3 ORIGIN FOR THE GROUP (A): 54.7503 39.6105 25.9854 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.1916 REMARK 3 T33: 0.2304 T12: 0.0225 REMARK 3 T13: -0.0009 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.6284 L22: 4.3792 REMARK 3 L33: 1.6944 L12: -0.6196 REMARK 3 L13: 0.4058 L23: 0.7986 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.0673 S13: 0.0379 REMARK 3 S21: -0.0244 S22: 0.0949 S23: -0.3716 REMARK 3 S31: -0.0815 S32: 0.0668 S33: -0.0345 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 114:159) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8115 16.3036 14.7606 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.2385 REMARK 3 T33: 0.2449 T12: -0.0133 REMARK 3 T13: -0.0922 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.5421 L22: 4.4510 REMARK 3 L33: 1.9036 L12: -0.8291 REMARK 3 L13: -0.7436 L23: 1.4480 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0186 S13: -0.1626 REMARK 3 S21: 0.2606 S22: -0.0248 S23: 0.0478 REMARK 3 S31: 0.5368 S32: -0.1087 S33: -0.0558 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 160:195) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4855 26.1408 20.4877 REMARK 3 T TENSOR REMARK 3 T11: 0.3795 T22: 0.2619 REMARK 3 T33: 0.2076 T12: 0.0168 REMARK 3 T13: 0.0143 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 1.3384 L22: 5.1770 REMARK 3 L33: 3.4334 L12: -0.9528 REMARK 3 L13: -0.3371 L23: 4.1257 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: 0.0330 S13: -0.0022 REMARK 3 S21: -0.1232 S22: -0.2321 S23: 0.0205 REMARK 3 S31: -0.1667 S32: -0.2052 S33: 0.0245 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 196:233) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1166 13.4283 2.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.3529 T22: 0.1915 REMARK 3 T33: 0.3104 T12: -0.0076 REMARK 3 T13: 0.0468 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.2671 L22: 2.4826 REMARK 3 L33: 6.8008 L12: -0.7239 REMARK 3 L13: 0.0725 L23: 0.9446 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: 0.0128 S13: -0.0651 REMARK 3 S21: -0.3619 S22: -0.1505 S23: -0.0125 REMARK 3 S31: 0.2746 S32: 0.2164 S33: 0.0250 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resseq 234:308) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1854 36.9409 -0.3034 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.1969 REMARK 3 T33: 0.2165 T12: 0.0164 REMARK 3 T13: -0.0274 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.5998 L22: 2.1946 REMARK 3 L33: 4.2124 L12: -0.0203 REMARK 3 L13: -0.7483 L23: 0.7476 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.0264 S13: -0.0002 REMARK 3 S21: -0.1577 S22: -0.0186 S23: -0.1252 REMARK 3 S31: -0.0115 S32: 0.2713 S33: 0.0652 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resseq 309:368) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0137 39.1771 5.6117 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.2308 REMARK 3 T33: 0.2416 T12: 0.0421 REMARK 3 T13: -0.0076 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.9763 L22: 3.0493 REMARK 3 L33: 2.8231 L12: 0.6770 REMARK 3 L13: 0.7135 L23: 0.4777 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.1048 S13: -0.0110 REMARK 3 S21: 0.0739 S22: 0.0900 S23: 0.0562 REMARK 3 S31: 0.0656 S32: -0.0542 S33: -0.0034 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resseq 369:398) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3224 30.9662 -10.0149 REMARK 3 T TENSOR REMARK 3 T11: 0.2924 T22: 0.3322 REMARK 3 T33: 0.2595 T12: -0.0262 REMARK 3 T13: 0.0585 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.2963 L22: 4.8878 REMARK 3 L33: 5.5066 L12: -1.7839 REMARK 3 L13: -0.4199 L23: 1.4677 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: -0.0031 S13: -0.0424 REMARK 3 S21: -0.3025 S22: 0.4174 S23: -1.1955 REMARK 3 S31: 0.0588 S32: 0.5947 S33: -0.2007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resseq 399:447) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7870 29.8747 -9.5985 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.3175 REMARK 3 T33: 0.2716 T12: -0.0382 REMARK 3 T13: 0.0267 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.6080 L22: 3.6376 REMARK 3 L33: 2.9772 L12: -1.6100 REMARK 3 L13: -1.9565 L23: 0.8257 REMARK 3 S TENSOR REMARK 3 S11: 0.2369 S12: 0.1295 S13: 0.1021 REMARK 3 S21: -0.2067 S22: -0.1032 S23: -0.4000 REMARK 3 S31: -0.2549 S32: 0.1713 S33: -0.1190 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-11. REMARK 100 THE RCSB ID CODE IS RCSB067962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56900 REMARK 200 FOR SHELL : 3.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.56650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.56650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER IS GENERATED BY X,Y,Z AND -X+1,-Y+1,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 115.13300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 61.12000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 ASN A 198 REMARK 465 GLY A 199 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 15 CZ REMARK 480 GLU A 20 OE2 REMARK 480 GLU A 27 CD REMARK 480 ARG A 75 CZ REMARK 480 ARG A 91 CZ REMARK 480 GLU A 115 CD REMARK 480 GLU A 131 CD REMARK 480 GLU A 139 CD REMARK 480 GLN A 146 CD REMARK 480 TYR A 167 CD2 CZ REMARK 480 PHE A 190 CD1 CD2 CE1 CZ REMARK 480 ARG A 203 CZ REMARK 480 ARG A 237 CZ REMARK 480 LYS A 282 CD REMARK 480 LYS A 365 CE REMARK 480 GLU A 366 CD REMARK 480 GLU A 401 CD REMARK 480 GLU A 408 OE1 REMARK 480 LYS A 416 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 350 76.82 59.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 455 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00111 RELATED DB: TARGETDB DBREF 3TV9 A 15 447 UNP Q7UAN7 Q7UAN7_SHIFL 15 447 SEQADV 3TV9 MSE A -9 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 HIS A -8 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 HIS A -7 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 HIS A -6 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 HIS A -5 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 HIS A -4 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 HIS A -3 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 SER A -2 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 SER A -1 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 GLY A 0 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 VAL A 1 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 ASP A 2 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 LEU A 3 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 GLY A 4 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 THR A 5 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 GLU A 6 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 ASN A 7 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 LEU A 8 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 TYR A 9 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 PHE A 10 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 GLN A 11 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 SER A 12 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 ASN A 13 UNP Q7UAN7 EXPRESSION TAG SEQADV 3TV9 ALA A 14 UNP Q7UAN7 EXPRESSION TAG SEQRES 1 A 457 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 457 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ARG LYS SEQRES 3 A 457 ILE LEU GLU GLU ALA VAL SER THR ALA LEU GLU LEU ALA SEQRES 4 A 457 SER GLY LYS SER ASP GLY ALA GLU VAL ALA VAL SER LYS SEQRES 5 A 457 THR THR GLY ILE SER VAL SER THR ARG TYR GLY GLU VAL SEQRES 6 A 457 GLU ASN VAL GLU PHE ASN SER ASP GLY ALA LEU GLY ILE SEQRES 7 A 457 THR VAL TYR HIS GLN ASN ARG LYS GLY SER ALA SER SER SEQRES 8 A 457 THR ASP LEU SER PRO GLN ALA ILE ALA ARG THR VAL GLN SEQRES 9 A 457 ALA ALA LEU ASP ILE ALA ARG TYR THR SER PRO ASP PRO SEQRES 10 A 457 CYS ALA GLY VAL ALA ASP LYS GLU LEU LEU ALA PHE ASP SEQRES 11 A 457 ALA PRO ASN LEU ASP LEU PHE HIS PRO ALA GLU VAL SER SEQRES 12 A 457 PRO ASP GLU ALA ILE GLU LEU ALA ALA ARG ALA GLU GLN SEQRES 13 A 457 ALA ALA LEU GLN ALA ASP LYS ARG ILE THR ASN THR GLU SEQRES 14 A 457 GLY GLY SER PHE ASN SER HIS TYR GLY VAL LYS VAL PHE SEQRES 15 A 457 GLY ASN SER HIS GLY MSE LEU GLN GLY TYR CYS SER THR SEQRES 16 A 457 ARG HIS SER LEU PHE SER CYS VAL ILE ALA GLU GLU ASN SEQRES 17 A 457 GLY ASP MSE GLU ARG ASP TYR ALA TYR THR ILE GLY ARG SEQRES 18 A 457 ALA MSE SER ASP LEU GLN THR PRO GLU TRP VAL GLY ALA SEQRES 19 A 457 ASP CYS ALA ARG ARG THR LEU SER ARG LEU SER PRO ARG SEQRES 20 A 457 LYS LEU SER THR MSE LYS ALA PRO VAL ILE PHE ALA ASN SEQRES 21 A 457 GLU VAL ALA THR GLY LEU PHE GLY HIS LEU VAL GLY ALA SEQRES 22 A 457 ILE ALA GLY GLY SER VAL TYR ARG LYS SER THR PHE LEU SEQRES 23 A 457 LEU ASP SER LEU GLY LYS GLN ILE LEU PRO ASP TRP LEU SEQRES 24 A 457 THR ILE GLU GLU HIS PRO HIS LEU LEU LYS GLY LEU ALA SEQRES 25 A 457 SER THR PRO PHE ASP SER GLU GLY VAL ARG THR GLU ARG SEQRES 26 A 457 ARG ASP ILE ILE LYS ASP GLY ILE LEU THR GLN TRP LEU SEQRES 27 A 457 LEU THR SER TYR SER ALA ARG LYS LEU GLY LEU LYS SER SEQRES 28 A 457 THR GLY HIS ALA GLY GLY ILE HIS ASN TRP ARG ILE ALA SEQRES 29 A 457 GLY GLN GLY LEU SER PHE GLU GLN MSE LEU LYS GLU MSE SEQRES 30 A 457 GLY THR GLY LEU VAL VAL THR GLU LEU MSE GLY GLN GLY SEQRES 31 A 457 VAL SER ALA ILE THR GLY ASP TYR SER ARG GLY ALA ALA SEQRES 32 A 457 GLY PHE TRP VAL GLU ASN GLY GLU ILE GLN TYR PRO VAL SEQRES 33 A 457 SER GLU ILE THR ILE ALA GLY ASN LEU LYS ASP MSE TRP SEQRES 34 A 457 ARG ASN ILE VAL THR VAL GLY ASN ASP ILE GLU THR ARG SEQRES 35 A 457 SER ASN ILE GLN CYS GLY SER VAL LEU LEU PRO GLU MSE SEQRES 36 A 457 LYS ILE MODRES 3TV9 MSE A 178 MET SELENOMETHIONINE MODRES 3TV9 MSE A 201 MET SELENOMETHIONINE MODRES 3TV9 MSE A 213 MET SELENOMETHIONINE MODRES 3TV9 MSE A 242 MET SELENOMETHIONINE MODRES 3TV9 MSE A 363 MET SELENOMETHIONINE MODRES 3TV9 MSE A 367 MET SELENOMETHIONINE MODRES 3TV9 MSE A 377 MET SELENOMETHIONINE MODRES 3TV9 MSE A 418 MET SELENOMETHIONINE MODRES 3TV9 MSE A 445 MET SELENOMETHIONINE HET MSE A 178 8 HET MSE A 201 8 HET MSE A 213 8 HET MSE A 242 8 HET MSE A 363 8 HET MSE A 367 8 HET MSE A 377 8 HET MSE A 418 8 HET MSE A 445 8 HET SO4 A 451 5 HET GOL A 452 6 HET SO4 A 453 5 HET SO4 A 454 5 HET GOL A 455 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 SO4 3(O4 S 2-) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 7 HOH *80(H2 O) HELIX 1 1 ASN A 13 GLY A 31 1 19 HELIX 2 2 SER A 85 ALA A 100 1 16 HELIX 3 3 ASP A 113 LEU A 117 5 5 HELIX 4 4 SER A 133 ALA A 151 1 19 HELIX 5 5 ALA A 212 LEU A 216 5 5 HELIX 6 6 THR A 218 ARG A 233 1 16 HELIX 7 7 ALA A 249 ILE A 264 1 16 HELIX 8 8 ALA A 265 ARG A 271 1 7 HELIX 9 9 THR A 330 GLY A 338 1 9 HELIX 10 10 SER A 359 GLY A 368 1 10 HELIX 11 11 LEU A 415 ASN A 421 1 7 SHEET 1 A 6 ARG A 75 SER A 81 0 SHEET 2 A 6 ASN A 57 HIS A 72 -1 N ILE A 68 O ALA A 79 SHEET 3 A 6 GLY A 35 THR A 50 -1 N GLU A 37 O THR A 69 SHEET 4 A 6 ILE A 155 ASN A 174 -1 O GLY A 173 N VAL A 38 SHEET 5 A 6 MSE A 178 ALA A 195 -1 O CYS A 192 N GLU A 159 SHEET 6 A 6 GLU A 202 GLY A 210 -1 O GLY A 210 N HIS A 187 SHEET 1 B 6 GLU A 401 ASN A 414 0 SHEET 2 B 6 ASP A 387 GLU A 398 -1 N GLY A 394 O VAL A 406 SHEET 3 B 6 GLY A 370 MSE A 377 -1 N VAL A 372 O PHE A 395 SHEET 4 B 6 MSE A 242 PHE A 248 1 N ILE A 247 O VAL A 373 SHEET 5 B 6 VAL A 440 ILE A 447 -1 O LEU A 442 N VAL A 246 SHEET 6 B 6 THR A 424 VAL A 425 -1 N THR A 424 O LEU A 441 SHEET 1 C 5 ILE A 323 LEU A 324 0 SHEET 2 C 5 ARG A 316 LYS A 320 -1 N LYS A 320 O ILE A 323 SHEET 3 C 5 ILE A 291 GLU A 293 -1 N GLU A 293 O ARG A 316 SHEET 4 C 5 TRP A 351 ILE A 353 -1 O ARG A 352 N GLU A 292 SHEET 5 C 5 ILE A 435 GLN A 436 1 O GLN A 436 N TRP A 351 LINK C GLY A 177 N MSE A 178 1555 1555 1.32 LINK C MSE A 178 N LEU A 179 1555 1555 1.33 LINK C ASP A 200 N MSE A 201 1555 1555 1.33 LINK C MSE A 201 N GLU A 202 1555 1555 1.33 LINK C ALA A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N SER A 214 1555 1555 1.34 LINK C THR A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N LYS A 243 1555 1555 1.33 LINK C GLN A 362 N MSE A 363 1555 1555 1.33 LINK C MSE A 363 N LEU A 364 1555 1555 1.33 LINK C GLU A 366 N MSE A 367 1555 1555 1.33 LINK C MSE A 367 N GLY A 368 1555 1555 1.32 LINK C LEU A 376 N MSE A 377 1555 1555 1.33 LINK C MSE A 377 N GLY A 378 1555 1555 1.34 LINK C ASP A 417 N MSE A 418 1555 1555 1.33 LINK C MSE A 418 N TRP A 419 1555 1555 1.33 LINK C GLU A 444 N MSE A 445 1555 1555 1.33 LINK C MSE A 445 N LYS A 446 1555 1555 1.33 SITE 1 AC1 4 ALA A 212 MSE A 213 SER A 214 HOH A 466 SITE 1 AC2 6 GLN A 217 TRP A 221 ILE A 429 GLU A 430 SITE 2 AC2 6 THR A 431 ARG A 432 SITE 1 AC3 2 HIS A 294 ARG A 315 SITE 1 AC4 3 SER A 184 ARG A 186 ARG A 211 SITE 1 AC5 2 ASP A 428 HOH A 469 CRYST1 115.133 61.120 65.101 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015361 0.00000