HEADER PROTEIN TRANSPORT 21-SEP-11 3TW8 TITLE GEF DOMAIN OF DENND 1B IN COMPLEX WITH RAB GTPASE RAB35 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DENN DOMAIN-CONTAINING PROTEIN 1B; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 1-391; COMPND 5 SYNONYM: CONNECDENN 2, PROTEIN FAM31B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAS-RELATED PROTEIN RAB-35; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 1-180; COMPND 11 SYNONYM: GTP-BINDING PROTEIN RAY, RAS-RELATED PROTEIN RAB-1C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DENND1B, C1ORF218, FAM31B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: RAB35, RAB1C, RAY; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LONGIN DOMAIN, RAB GTPASE, GUANINE EXCHANGE FACTOR, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR X.D.WU,D.KUMMEL,K.M.REINISCH REVDAT 3 28-FEB-24 3TW8 1 SEQADV REVDAT 2 30-NOV-11 3TW8 1 JRNL REVDAT 1 16-NOV-11 3TW8 0 JRNL AUTH X.WU,M.J.BRADLEY,Y.CAI,D.KUMMEL,E.M.DE LA CRUZ,F.A.BARR, JRNL AUTH 2 K.M.REINISCH JRNL TITL INSIGHTS REGARDING GUANINE NUCLEOTIDE EXCHANGE FROM THE JRNL TITL 2 STRUCTURE OF A DENN-DOMAIN PROTEIN COMPLEXED WITH ITS RAB JRNL TITL 3 GTPASE SUBSTRATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 18672 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22065758 JRNL DOI 10.1073/PNAS.1110415108 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4502 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 335 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -2.15000 REMARK 3 B33 (A**2) : 1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8214 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5480 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11178 ; 1.620 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13255 ; 1.099 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1036 ; 6.125 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 344 ;33.321 ;24.331 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1313 ;15.325 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.573 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1322 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9124 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1660 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5216 ; 2.594 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2097 ; 1.689 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8397 ; 3.312 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2998 ; 4.615 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2781 ; 5.620 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 9 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 20 2 REMARK 3 1 C 3 C 20 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 107 ; 0.050 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 144 ; 0.060 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 107 ; 0.300 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 144 ; 0.280 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 30 A 56 2 REMARK 3 1 C 30 C 56 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 157 ; 0.050 ; 0.050 REMARK 3 MEDIUM POSITIONAL 2 A (A): 235 ; 0.050 ; 0.500 REMARK 3 TIGHT THERMAL 2 A (A**2): 157 ; 0.270 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 235 ; 0.220 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 71 A 86 2 REMARK 3 1 C 71 C 86 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 95 ; 0.050 ; 0.050 REMARK 3 MEDIUM POSITIONAL 3 A (A): 133 ; 0.050 ; 0.500 REMARK 3 TIGHT THERMAL 3 A (A**2): 95 ; 0.460 ; 0.500 REMARK 3 MEDIUM THERMAL 3 A (A**2): 133 ; 0.250 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 97 A 108 2 REMARK 3 1 C 97 C 108 2 REMARK 3 2 A 110 A 139 2 REMARK 3 2 C 110 C 139 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 A (A): 250 ; 0.070 ; 0.050 REMARK 3 MEDIUM POSITIONAL 4 A (A): 298 ; 0.070 ; 0.500 REMARK 3 TIGHT THERMAL 4 A (A**2): 250 ; 0.340 ; 0.500 REMARK 3 MEDIUM THERMAL 4 A (A**2): 298 ; 0.250 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 1243 ; 0.100 ; 0.050 REMARK 3 TIGHT THERMAL 5 A (A**2): 1243 ; 0.330 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 265 A 322 1 REMARK 3 1 C 265 C 322 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 6 A (A): 668 ; 0.050 ; 0.050 REMARK 3 TIGHT THERMAL 6 A (A**2): 668 ; 0.250 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 7 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 7 A (A): 467 ; 0.050 ; 0.050 REMARK 3 TIGHT THERMAL 7 A (A**2): 467 ; 0.170 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 8 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 6 B 9 2 REMARK 3 1 D 6 D 9 2 REMARK 3 2 B 11 B 30 2 REMARK 3 2 D 11 D 30 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 8 B (A): 141 ; 0.050 ; 0.050 REMARK 3 MEDIUM POSITIONAL 8 B (A): 165 ; 0.050 ; 0.500 REMARK 3 TIGHT THERMAL 8 B (A**2): 141 ; 0.240 ; 0.500 REMARK 3 MEDIUM THERMAL 8 B (A**2): 165 ; 0.190 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 9 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 37 B 176 2 REMARK 3 1 D 37 D 176 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 9 B (A): 831 ; 0.040 ; 0.050 REMARK 3 MEDIUM POSITIONAL 9 B (A): 936 ; 0.050 ; 0.500 REMARK 3 TIGHT THERMAL 9 B (A**2): 831 ; 0.220 ; 0.500 REMARK 3 MEDIUM THERMAL 9 B (A**2): 936 ; 0.180 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 105.6746 10.2618 59.8758 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.2002 REMARK 3 T33: 0.1148 T12: 0.0505 REMARK 3 T13: -0.0456 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.1280 L22: 4.4127 REMARK 3 L33: 1.6670 L12: 0.2766 REMARK 3 L13: -0.7207 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: -0.0746 S13: -0.1127 REMARK 3 S21: 0.6373 S22: 0.1080 S23: 0.2334 REMARK 3 S31: 0.0571 S32: 0.0594 S33: -0.0215 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 78.8825 14.0452 71.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.3885 REMARK 3 T33: 0.5312 T12: 0.0917 REMARK 3 T13: 0.2099 T23: 0.0993 REMARK 3 L TENSOR REMARK 3 L11: 2.4893 L22: 2.4746 REMARK 3 L33: 2.6696 L12: -0.0401 REMARK 3 L13: -0.6142 L23: 0.3833 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: -0.1676 S13: 0.2092 REMARK 3 S21: 0.4420 S22: 0.0278 S23: 0.7415 REMARK 3 S31: -0.1756 S32: -0.5814 S33: -0.1663 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 374 REMARK 3 ORIGIN FOR THE GROUP (A): 123.7110 29.7217 26.0610 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.2272 REMARK 3 T33: 0.1232 T12: 0.0738 REMARK 3 T13: -0.0635 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.2835 L22: 3.6227 REMARK 3 L33: 2.8639 L12: 1.2064 REMARK 3 L13: -1.1785 L23: -0.2160 REMARK 3 S TENSOR REMARK 3 S11: 0.1686 S12: 0.1569 S13: 0.3491 REMARK 3 S21: -0.2435 S22: 0.0078 S23: -0.0043 REMARK 3 S31: -0.2432 S32: -0.1251 S33: -0.1764 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 177 REMARK 3 ORIGIN FOR THE GROUP (A): 147.4837 18.0548 13.4475 REMARK 3 T TENSOR REMARK 3 T11: 0.2378 T22: 0.3832 REMARK 3 T33: 0.2382 T12: 0.1078 REMARK 3 T13: -0.0372 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 3.7857 L22: 3.1790 REMARK 3 L33: 2.7764 L12: -0.8111 REMARK 3 L13: -1.0823 L23: -0.0553 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: 0.1992 S13: -0.0576 REMARK 3 S21: -0.4984 S22: -0.1453 S23: -0.5331 REMARK 3 S31: 0.1949 S32: 0.3772 S33: 0.0274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000067997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66297 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM FORMATE, 19% PEG 3350, REMARK 280 0.1 M HEPES (PH 7.4), 4MM N-NONYL-BETA-D-GLUCOSIDE, 289K, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.29400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.28150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.29400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.28150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 HIS A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 PRO A 145 REMARK 465 VAL A 146 REMARK 465 ASN A 147 REMARK 465 LEU A 148 REMARK 465 SER A 149 REMARK 465 VAL A 150 REMARK 465 HIS A 151 REMARK 465 SER A 152 REMARK 465 TYR A 153 REMARK 465 PHE A 154 REMARK 465 ILE A 155 REMARK 465 ALA A 156 REMARK 465 PRO A 157 REMARK 465 ASP A 158 REMARK 465 VAL A 159 REMARK 465 THR A 160 REMARK 465 ALA A 325 REMARK 465 LEU A 326 REMARK 465 ARG A 327 REMARK 465 TYR A 328 REMARK 465 LYS A 329 REMARK 465 PRO A 330 REMARK 465 GLY A 331 REMARK 465 GLU A 332 REMARK 465 PRO A 333 REMARK 465 ALA A 375 REMARK 465 GLY A 376 REMARK 465 ARG A 377 REMARK 465 GLY A 378 REMARK 465 PHE A 379 REMARK 465 SER A 380 REMARK 465 ASP A 381 REMARK 465 VAL A 382 REMARK 465 PHE A 383 REMARK 465 GLU A 384 REMARK 465 GLU A 385 REMARK 465 GLU A 386 REMARK 465 ILE A 387 REMARK 465 THR A 388 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLY A 391 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 ASP B 4 REMARK 465 PHE B 33 REMARK 465 SER B 34 REMARK 465 GLY B 35 REMARK 465 ALA B 177 REMARK 465 LYS B 178 REMARK 465 GLN B 179 REMARK 465 GLN B 180 REMARK 465 ASN C 147 REMARK 465 LEU C 148 REMARK 465 SER C 149 REMARK 465 VAL C 150 REMARK 465 HIS C 151 REMARK 465 ARG C 327 REMARK 465 TYR C 328 REMARK 465 LYS C 329 REMARK 465 PRO C 330 REMARK 465 GLY C 331 REMARK 465 GLU C 332 REMARK 465 PRO C 333 REMARK 465 ALA C 375 REMARK 465 GLY C 376 REMARK 465 ARG C 377 REMARK 465 GLY C 378 REMARK 465 PHE C 379 REMARK 465 SER C 380 REMARK 465 ASP C 381 REMARK 465 VAL C 382 REMARK 465 PHE C 383 REMARK 465 GLU C 384 REMARK 465 GLU C 385 REMARK 465 GLU C 386 REMARK 465 ILE C 387 REMARK 465 THR C 388 REMARK 465 SER C 389 REMARK 465 GLY C 390 REMARK 465 GLY C 391 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ARG D 3 REMARK 465 SER D 34 REMARK 465 LYS D 178 REMARK 465 GLN D 179 REMARK 465 GLN D 180 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 21 CD CE NZ REMARK 480 GLN A 47 CG CD OE1 NE2 REMARK 480 GLU A 59 CG CD OE1 OE2 REMARK 480 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 121 CD CE NZ REMARK 480 LEU A 123 CG CD1 CD2 REMARK 480 LYS A 141 CG CD CE NZ REMARK 480 ARG A 169 CD NE CZ NH1 NH2 REMARK 480 ILE A 253 CG1 CG2 CD1 REMARK 480 GLU A 254 CG CD OE1 OE2 REMARK 480 LYS A 295 CD CE NZ REMARK 480 GLN A 299 CG CD OE1 NE2 REMARK 480 ARG A 323 NE CZ NH1 NH2 REMARK 480 PHE A 336 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU A 338 CG CD OE1 OE2 REMARK 480 GLU A 339 CG CD OE1 OE2 REMARK 480 LYS A 343 CG CD CE NZ REMARK 480 ARG A 345 CG CD NE CZ NH1 NH2 REMARK 480 VAL A 348 CG1 CG2 REMARK 480 LYS A 350 CD CE NZ REMARK 480 GLN A 351 CG CD OE1 NE2 REMARK 480 LYS A 372 CG CD CE NZ REMARK 480 TYR B 5 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 SER B 23 OG REMARK 480 GLU B 94 CG CD OE1 OE2 REMARK 480 ASN B 98 CG OD1 ND2 REMARK 480 ASP B 112 OD1 OD2 REMARK 480 ASP B 124 CG OD1 OD2 REMARK 480 GLU B 126 CG CD OE1 OE2 REMARK 480 ARG B 127 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 128 CE NZ REMARK 480 GLU B 131 CG CD OE1 OE2 REMARK 480 GLU B 133 CG CD OE1 OE2 REMARK 480 LYS B 137 CG CD CE NZ REMARK 480 GLN B 145 CD OE1 NE2 REMARK 480 LYS B 152 CG CD CE NZ REMARK 480 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 480 ASN B 175 CG OD1 ND2 REMARK 480 SER C 25 OG REMARK 480 GLU C 26 CG CD OE1 OE2 REMARK 480 GLU C 59 CG CD OE1 OE2 REMARK 480 ARG C 60 CG CD NE CZ NH1 NH2 REMARK 480 ASP C 117 CG OD1 OD2 REMARK 480 LYS C 121 CD CE NZ REMARK 480 GLU C 122 CG CD OE1 OE2 REMARK 480 GLU C 129 CG CD OE1 OE2 REMARK 480 ARG C 132 CG CD NE CZ NH1 NH2 REMARK 480 LYS C 141 CG CD CE NZ REMARK 480 PRO C 145 CG CD REMARK 480 VAL C 146 CG1 CG2 REMARK 480 ASP C 158 CG OD1 OD2 REMARK 480 VAL C 159 CG1 CG2 REMARK 480 GLU C 254 CD OE1 OE2 REMARK 480 SER C 279 OG REMARK 480 ASN C 282 CG OD1 ND2 REMARK 480 ASN C 294 CG OD1 ND2 REMARK 480 LYS C 295 CD CE NZ REMARK 480 LYS C 297 CG CD CE NZ REMARK 480 LYS C 298 CG CD CE NZ REMARK 480 GLN C 299 CG CD OE1 NE2 REMARK 480 ARG C 313 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 323 CG CD NE CZ NH1 NH2 REMARK 480 ASP C 324 CG OD1 OD2 REMARK 480 LEU C 326 CG CD1 CD2 REMARK 480 LYS C 343 CD CE NZ REMARK 480 SER C 346 OG REMARK 480 LYS C 350 CG CD CE NZ REMARK 480 GLN C 351 CG CD OE1 NE2 REMARK 480 GLU C 354 CG CD OE1 OE2 REMARK 480 ARG C 369 NE CZ NH1 NH2 REMARK 480 LYS C 372 CG CD CE NZ REMARK 480 ASN D 31 CG OD1 ND2 REMARK 480 THR D 32 OG1 CG2 REMARK 480 PHE D 33 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU D 51 CG CD OE1 OE2 REMARK 480 LYS D 56 CG CD CE NZ REMARK 480 LYS D 58 CD CE NZ REMARK 480 ARG D 71 CG CD NE CZ NH1 NH2 REMARK 480 ASN D 98 CG OD1 ND2 REMARK 480 ASP D 112 CG OD1 OD2 REMARK 480 ASP D 124 CG OD1 OD2 REMARK 480 GLU D 126 CG CD OE1 OE2 REMARK 480 ARG D 127 CD NE CZ NH1 NH2 REMARK 480 GLU D 131 CG CD OE1 OE2 REMARK 480 GLU D 133 CG CD OE1 OE2 REMARK 480 LYS D 137 CG CD CE NZ REMARK 480 GLN D 145 CD OE1 NE2 REMARK 480 LYS D 152 CG CD CE NZ REMARK 480 GLU D 166 CG CD OE1 OE2 REMARK 480 ARG D 170 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 189 O HOH A 441 2.13 REMARK 500 O HOH A 400 O HOH A 444 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG ASN A 125 ND2 ASN A 181 1545 2.15 REMARK 500 OD2 ASP C 287 CE1 PHE D 33 1565 2.17 REMARK 500 OD2 ASP C 287 CZ PHE D 33 1565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 195 CZ ARG A 195 NH1 -0.128 REMARK 500 ARG A 195 CZ ARG A 195 NH2 -0.117 REMARK 500 SER C 25 CB SER C 25 OG -0.085 REMARK 500 ARG C 195 CZ ARG C 195 NH1 -0.144 REMARK 500 ARG C 195 CZ ARG C 195 NH2 -0.119 REMARK 500 CYS C 238 CB CYS C 238 SG -0.145 REMARK 500 ARG C 369 CD ARG C 369 NE -0.120 REMARK 500 CYS D 110 CB CYS D 110 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 195 NH1 - CZ - NH2 ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 112 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP C 126 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 126 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 PRO C 145 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG C 195 NH1 - CZ - NH2 ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG C 195 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG C 195 NE - CZ - NH2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP D 63 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 -61.00 -103.72 REMARK 500 TYR A 218 138.60 -39.22 REMARK 500 HIS A 224 -157.19 -110.44 REMARK 500 GLU A 262 -175.58 -69.72 REMARK 500 ARG A 323 109.93 -55.84 REMARK 500 LEU A 373 -4.37 -53.26 REMARK 500 ASN B 31 -67.15 -108.54 REMARK 500 CYS B 110 42.73 -140.75 REMARK 500 ASN C 9 71.72 -118.79 REMARK 500 TRP C 34 133.36 -170.15 REMARK 500 PRO C 103 42.16 -81.56 REMARK 500 TYR C 218 136.00 -39.28 REMARK 500 HIS C 224 -156.49 -104.07 REMARK 500 LEU C 373 -7.67 -54.44 REMARK 500 CYS D 110 37.81 -142.75 REMARK 500 LEU D 176 -35.59 -38.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FOL RELATED DB: PDB REMARK 900 GDP RAB1A REMARK 900 RELATED ID: 1YZN RELATED DB: PDB REMARK 900 GPPNHP-BOUND YPT1P DBREF 3TW8 A 2 391 UNP Q6P3S1-2 DEN1B_HUMAN 1 390 DBREF 3TW8 B 1 180 UNP Q15286 RAB35_HUMAN 1 180 DBREF 3TW8 C 2 391 UNP Q6P3S1-2 DEN1B_HUMAN 1 390 DBREF 3TW8 D 1 180 UNP Q15286 RAB35_HUMAN 1 180 SEQADV 3TW8 SER A 1 UNP Q6P3S1-2 EXPRESSION TAG SEQADV 3TW8 SER B 0 UNP Q15286 EXPRESSION TAG SEQADV 3TW8 SER C 1 UNP Q6P3S1-2 EXPRESSION TAG SEQADV 3TW8 SER D 0 UNP Q15286 EXPRESSION TAG SEQRES 1 A 391 SER MET ASP CYS ARG THR LYS ALA ASN PRO ASP ARG THR SEQRES 2 A 391 PHE ASP LEU VAL LEU LYS VAL LYS CYS HIS ALA SER GLU SEQRES 3 A 391 ASN GLU ASP PRO VAL VAL LEU TRP LYS PHE PRO GLU ASP SEQRES 4 A 391 PHE GLY ASP GLN GLU ILE LEU GLN SER VAL PRO LYS PHE SEQRES 5 A 391 CYS PHE PRO PHE ASP VAL GLU ARG VAL SER GLN ASN GLN SEQRES 6 A 391 VAL GLY GLN HIS PHE THR PHE VAL LEU THR ASP ILE GLU SEQRES 7 A 391 SER LYS GLN ARG PHE GLY PHE CYS ARG LEU THR SER GLY SEQRES 8 A 391 GLY THR ILE CYS LEU CYS ILE LEU SER TYR LEU PRO TRP SEQRES 9 A 391 PHE GLU VAL TYR TYR LYS LEU LEU ASN THR LEU ALA ASP SEQRES 10 A 391 TYR LEU ALA LYS GLU LEU GLU ASN ASP LEU ASN GLU THR SEQRES 11 A 391 LEU ARG SER LEU TYR ASN HIS PRO VAL PRO LYS ALA ASN SEQRES 12 A 391 THR PRO VAL ASN LEU SER VAL HIS SER TYR PHE ILE ALA SEQRES 13 A 391 PRO ASP VAL THR GLY LEU PRO THR ILE PRO GLU SER ARG SEQRES 14 A 391 ASN LEU THR GLU TYR PHE VAL ALA VAL ASP VAL ASN ASN SEQRES 15 A 391 MET LEU GLN LEU TYR ALA SER MET LEU HIS GLU ARG ARG SEQRES 16 A 391 ILE VAL ILE ILE SER SER LYS LEU SER THR LEU THR ALA SEQRES 17 A 391 CYS ILE HIS GLY SER ALA ALA LEU LEU TYR PRO MET TYR SEQRES 18 A 391 TRP GLN HIS ILE TYR ILE PRO VAL LEU PRO PRO HIS LEU SEQRES 19 A 391 LEU ASP TYR CYS CYS ALA PRO MET PRO TYR LEU ILE GLY SEQRES 20 A 391 ILE HIS SER SER LEU ILE GLU ARG VAL LYS ASN LYS SER SEQRES 21 A 391 LEU GLU ASP VAL VAL MET LEU ASN VAL ASP THR ASN THR SEQRES 22 A 391 LEU GLU SER PRO PHE SER ASP LEU ASN ASN LEU PRO SER SEQRES 23 A 391 ASP VAL VAL SER ALA LEU LYS ASN LYS LEU LYS LYS GLN SEQRES 24 A 391 SER THR ALA THR GLY ASP GLY VAL ALA ARG ALA PHE LEU SEQRES 25 A 391 ARG ALA GLN ALA ALA LEU PHE GLY SER TYR ARG ASP ALA SEQRES 26 A 391 LEU ARG TYR LYS PRO GLY GLU PRO ILE THR PHE CYS GLU SEQRES 27 A 391 GLU SER PHE VAL LYS HIS ARG SER SER VAL MET LYS GLN SEQRES 28 A 391 PHE LEU GLU THR ALA ILE ASN LEU GLN LEU PHE LYS GLN SEQRES 29 A 391 PHE ILE ASP GLY ARG LEU ALA LYS LEU ASN ALA GLY ARG SEQRES 30 A 391 GLY PHE SER ASP VAL PHE GLU GLU GLU ILE THR SER GLY SEQRES 31 A 391 GLY SEQRES 1 B 181 SER MET ALA ARG ASP TYR ASP HIS LEU PHE LYS LEU LEU SEQRES 2 B 181 ILE ILE GLY ASP SER GLY VAL GLY LYS SER SER LEU LEU SEQRES 3 B 181 LEU ARG PHE ALA ASP ASN THR PHE SER GLY SER TYR ILE SEQRES 4 B 181 THR THR ILE GLY VAL ASP PHE LYS ILE ARG THR VAL GLU SEQRES 5 B 181 ILE ASN GLY GLU LYS VAL LYS LEU GLN ILE TRP ASP THR SEQRES 6 B 181 ALA GLY GLN GLU ARG PHE ARG THR ILE THR SER THR TYR SEQRES 7 B 181 TYR ARG GLY THR HIS GLY VAL ILE VAL VAL TYR ASP VAL SEQRES 8 B 181 THR SER ALA GLU SER PHE VAL ASN VAL LYS ARG TRP LEU SEQRES 9 B 181 HIS GLU ILE ASN GLN ASN CYS ASP ASP VAL CYS ARG ILE SEQRES 10 B 181 LEU VAL GLY ASN LYS ASN ASP ASP PRO GLU ARG LYS VAL SEQRES 11 B 181 VAL GLU THR GLU ASP ALA TYR LYS PHE ALA GLY GLN MET SEQRES 12 B 181 GLY ILE GLN LEU PHE GLU THR SER ALA LYS GLU ASN VAL SEQRES 13 B 181 ASN VAL GLU GLU MET PHE ASN CYS ILE THR GLU LEU VAL SEQRES 14 B 181 LEU ARG ALA LYS LYS ASP ASN LEU ALA LYS GLN GLN SEQRES 1 C 391 SER MET ASP CYS ARG THR LYS ALA ASN PRO ASP ARG THR SEQRES 2 C 391 PHE ASP LEU VAL LEU LYS VAL LYS CYS HIS ALA SER GLU SEQRES 3 C 391 ASN GLU ASP PRO VAL VAL LEU TRP LYS PHE PRO GLU ASP SEQRES 4 C 391 PHE GLY ASP GLN GLU ILE LEU GLN SER VAL PRO LYS PHE SEQRES 5 C 391 CYS PHE PRO PHE ASP VAL GLU ARG VAL SER GLN ASN GLN SEQRES 6 C 391 VAL GLY GLN HIS PHE THR PHE VAL LEU THR ASP ILE GLU SEQRES 7 C 391 SER LYS GLN ARG PHE GLY PHE CYS ARG LEU THR SER GLY SEQRES 8 C 391 GLY THR ILE CYS LEU CYS ILE LEU SER TYR LEU PRO TRP SEQRES 9 C 391 PHE GLU VAL TYR TYR LYS LEU LEU ASN THR LEU ALA ASP SEQRES 10 C 391 TYR LEU ALA LYS GLU LEU GLU ASN ASP LEU ASN GLU THR SEQRES 11 C 391 LEU ARG SER LEU TYR ASN HIS PRO VAL PRO LYS ALA ASN SEQRES 12 C 391 THR PRO VAL ASN LEU SER VAL HIS SER TYR PHE ILE ALA SEQRES 13 C 391 PRO ASP VAL THR GLY LEU PRO THR ILE PRO GLU SER ARG SEQRES 14 C 391 ASN LEU THR GLU TYR PHE VAL ALA VAL ASP VAL ASN ASN SEQRES 15 C 391 MET LEU GLN LEU TYR ALA SER MET LEU HIS GLU ARG ARG SEQRES 16 C 391 ILE VAL ILE ILE SER SER LYS LEU SER THR LEU THR ALA SEQRES 17 C 391 CYS ILE HIS GLY SER ALA ALA LEU LEU TYR PRO MET TYR SEQRES 18 C 391 TRP GLN HIS ILE TYR ILE PRO VAL LEU PRO PRO HIS LEU SEQRES 19 C 391 LEU ASP TYR CYS CYS ALA PRO MET PRO TYR LEU ILE GLY SEQRES 20 C 391 ILE HIS SER SER LEU ILE GLU ARG VAL LYS ASN LYS SER SEQRES 21 C 391 LEU GLU ASP VAL VAL MET LEU ASN VAL ASP THR ASN THR SEQRES 22 C 391 LEU GLU SER PRO PHE SER ASP LEU ASN ASN LEU PRO SER SEQRES 23 C 391 ASP VAL VAL SER ALA LEU LYS ASN LYS LEU LYS LYS GLN SEQRES 24 C 391 SER THR ALA THR GLY ASP GLY VAL ALA ARG ALA PHE LEU SEQRES 25 C 391 ARG ALA GLN ALA ALA LEU PHE GLY SER TYR ARG ASP ALA SEQRES 26 C 391 LEU ARG TYR LYS PRO GLY GLU PRO ILE THR PHE CYS GLU SEQRES 27 C 391 GLU SER PHE VAL LYS HIS ARG SER SER VAL MET LYS GLN SEQRES 28 C 391 PHE LEU GLU THR ALA ILE ASN LEU GLN LEU PHE LYS GLN SEQRES 29 C 391 PHE ILE ASP GLY ARG LEU ALA LYS LEU ASN ALA GLY ARG SEQRES 30 C 391 GLY PHE SER ASP VAL PHE GLU GLU GLU ILE THR SER GLY SEQRES 31 C 391 GLY SEQRES 1 D 181 SER MET ALA ARG ASP TYR ASP HIS LEU PHE LYS LEU LEU SEQRES 2 D 181 ILE ILE GLY ASP SER GLY VAL GLY LYS SER SER LEU LEU SEQRES 3 D 181 LEU ARG PHE ALA ASP ASN THR PHE SER GLY SER TYR ILE SEQRES 4 D 181 THR THR ILE GLY VAL ASP PHE LYS ILE ARG THR VAL GLU SEQRES 5 D 181 ILE ASN GLY GLU LYS VAL LYS LEU GLN ILE TRP ASP THR SEQRES 6 D 181 ALA GLY GLN GLU ARG PHE ARG THR ILE THR SER THR TYR SEQRES 7 D 181 TYR ARG GLY THR HIS GLY VAL ILE VAL VAL TYR ASP VAL SEQRES 8 D 181 THR SER ALA GLU SER PHE VAL ASN VAL LYS ARG TRP LEU SEQRES 9 D 181 HIS GLU ILE ASN GLN ASN CYS ASP ASP VAL CYS ARG ILE SEQRES 10 D 181 LEU VAL GLY ASN LYS ASN ASP ASP PRO GLU ARG LYS VAL SEQRES 11 D 181 VAL GLU THR GLU ASP ALA TYR LYS PHE ALA GLY GLN MET SEQRES 12 D 181 GLY ILE GLN LEU PHE GLU THR SER ALA LYS GLU ASN VAL SEQRES 13 D 181 ASN VAL GLU GLU MET PHE ASN CYS ILE THR GLU LEU VAL SEQRES 14 D 181 LEU ARG ALA LYS LYS ASP ASN LEU ALA LYS GLN GLN FORMUL 5 HOH *187(H2 O) HELIX 1 1 ASP A 42 PHE A 54 1 13 HELIX 2 2 ASP A 57 SER A 62 1 6 HELIX 3 3 GLN A 63 GLN A 65 5 3 HELIX 4 4 TRP A 104 LYS A 121 1 18 HELIX 5 5 LEU A 123 HIS A 137 1 15 HELIX 6 6 SER A 168 VAL A 178 1 11 HELIX 7 7 ASP A 179 LEU A 191 1 13 HELIX 8 8 LYS A 202 LEU A 216 1 15 HELIX 9 9 PRO A 231 ALA A 240 5 10 HELIX 10 10 LEU A 252 ASN A 258 1 7 HELIX 11 11 ASP A 280 LEU A 284 5 5 HELIX 12 12 PRO A 285 LYS A 297 1 13 HELIX 13 13 LYS A 298 THR A 303 5 6 HELIX 14 14 ASP A 305 GLY A 320 1 16 HELIX 15 15 SER A 321 ARG A 323 5 3 HELIX 16 16 CYS A 337 VAL A 342 1 6 HELIX 17 17 SER A 346 ILE A 357 1 12 HELIX 18 18 LEU A 359 LEU A 373 1 15 HELIX 19 19 GLY B 20 ALA B 29 1 10 HELIX 20 20 GLY B 66 PHE B 70 5 5 HELIX 21 21 THR B 74 ARG B 79 5 6 HELIX 22 22 SER B 92 CYS B 110 1 19 HELIX 23 23 ASP B 124 LYS B 128 5 5 HELIX 24 24 GLU B 131 GLY B 143 1 13 HELIX 25 25 ASN B 156 LEU B 176 1 21 HELIX 26 26 ASP C 42 PHE C 54 1 13 HELIX 27 27 SER C 62 VAL C 66 5 5 HELIX 28 28 TRP C 104 LYS C 121 1 18 HELIX 29 29 GLU C 124 HIS C 137 1 14 HELIX 30 30 SER C 168 VAL C 178 1 11 HELIX 31 31 ASP C 179 LEU C 191 1 13 HELIX 32 32 LYS C 202 LEU C 216 1 15 HELIX 33 33 PRO C 231 ALA C 240 5 10 HELIX 34 34 LEU C 252 LYS C 259 1 8 HELIX 35 35 ASP C 280 LEU C 284 5 5 HELIX 36 36 PRO C 285 LYS C 297 1 13 HELIX 37 37 LYS C 298 THR C 303 5 6 HELIX 38 38 ASP C 305 GLY C 320 1 16 HELIX 39 39 SER C 321 LEU C 326 5 6 HELIX 40 40 CYS C 337 VAL C 342 1 6 HELIX 41 41 SER C 346 ILE C 357 1 12 HELIX 42 42 LEU C 359 LEU C 373 1 15 HELIX 43 43 GLY D 20 ALA D 29 1 10 HELIX 44 44 TYR D 37 GLY D 42 1 6 HELIX 45 45 GLY D 66 PHE D 70 5 5 HELIX 46 46 THR D 74 ARG D 79 5 6 HELIX 47 47 SER D 92 CYS D 110 1 19 HELIX 48 48 ASP D 124 LYS D 128 5 5 HELIX 49 49 GLU D 131 MET D 142 1 12 HELIX 50 50 ASN D 156 ALA D 177 1 22 SHEET 1 A 5 VAL A 31 PHE A 36 0 SHEET 2 A 5 LEU A 16 LYS A 21 -1 N LYS A 21 O VAL A 31 SHEET 3 A 5 ILE A 94 SER A 100 -1 O LEU A 99 N LEU A 16 SHEET 4 A 5 GLN A 81 LEU A 88 -1 N PHE A 83 O SER A 100 SHEET 5 A 5 GLN A 68 THR A 75 -1 N PHE A 72 O GLY A 84 SHEET 1 B 5 ILE A 225 ILE A 227 0 SHEET 2 B 5 TYR A 244 HIS A 249 1 O GLY A 247 N ILE A 227 SHEET 3 B 5 ARG A 195 SER A 200 1 N ILE A 196 O TYR A 244 SHEET 4 B 5 VAL A 265 ASN A 268 1 O VAL A 265 N VAL A 197 SHEET 5 B 5 THR A 273 GLU A 275 -1 O GLU A 275 N MET A 266 SHEET 1 C 6 VAL B 43 ILE B 52 0 SHEET 2 C 6 GLU B 55 THR B 64 -1 O LEU B 59 N ARG B 48 SHEET 3 C 6 HIS B 7 ILE B 14 1 N LEU B 11 O GLN B 60 SHEET 4 C 6 GLY B 83 ASP B 89 1 O VAL B 87 N ILE B 14 SHEET 5 C 6 CYS B 114 ASN B 120 1 O ASN B 120 N TYR B 88 SHEET 6 C 6 LEU B 146 GLU B 148 1 O PHE B 147 N GLY B 119 SHEET 1 D 5 VAL C 31 PHE C 36 0 SHEET 2 D 5 LEU C 16 LYS C 21 -1 N LYS C 21 O VAL C 31 SHEET 3 D 5 ILE C 94 SER C 100 -1 O LEU C 99 N LEU C 16 SHEET 4 D 5 GLN C 81 THR C 89 -1 N PHE C 83 O SER C 100 SHEET 5 D 5 HIS C 69 THR C 75 -1 N PHE C 72 O GLY C 84 SHEET 1 E 5 ILE C 225 ILE C 227 0 SHEET 2 E 5 TYR C 244 HIS C 249 1 O GLY C 247 N ILE C 227 SHEET 3 E 5 ARG C 195 SER C 200 1 N ILE C 196 O ILE C 246 SHEET 4 E 5 VAL C 265 ASN C 268 1 O VAL C 265 N ARG C 195 SHEET 5 E 5 THR C 273 GLU C 275 -1 O THR C 273 N ASN C 268 SHEET 1 F 6 VAL D 43 ILE D 52 0 SHEET 2 F 6 GLU D 55 THR D 64 -1 O LEU D 59 N ARG D 48 SHEET 3 F 6 HIS D 7 ILE D 14 1 N LEU D 11 O GLN D 60 SHEET 4 F 6 GLY D 83 ASP D 89 1 O VAL D 87 N ILE D 14 SHEET 5 F 6 CYS D 114 ASN D 120 1 O ASN D 120 N TYR D 88 SHEET 6 F 6 LEU D 146 GLU D 148 1 O PHE D 147 N GLY D 119 CISPEP 1 PHE A 36 PRO A 37 0 -3.30 CISPEP 2 ILE A 165 PRO A 166 0 5.48 CISPEP 3 TYR A 218 PRO A 219 0 1.59 CISPEP 4 PHE C 36 PRO C 37 0 -3.62 CISPEP 5 ILE C 165 PRO C 166 0 4.86 CISPEP 6 TYR C 218 PRO C 219 0 6.84 CRYST1 122.588 56.563 175.305 90.00 95.63 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008157 0.000000 0.000804 0.00000 SCALE2 0.000000 0.017679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005732 0.00000