HEADER HYDROLASE 22-SEP-11 3TX2 TITLE STRUCTURE OF A PROBABLE 6-PHOSPHOGLUCONOLACTONASE FROM MYCOBACTERIUM TITLE 2 ABSCESSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 6-PHOSPHOGLUCONOLACTONASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 STRAIN: ATCC 19977 / DSM 44196; SOURCE 5 GENE: MAB_2763; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 PROBABLE 6-PHOSPHOGLUCONOLACTONASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3TX2 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 3TX2 1 JRNL REVDAT 1 05-OCT-11 3TX2 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2642 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1927 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1245 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2647 ; 1.379 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3062 ; 0.929 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 5.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;35.047 ;24.416 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;12.022 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.352 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2205 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 374 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 54.5886 6.9241 1.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0840 REMARK 3 T33: 0.0993 T12: -0.0026 REMARK 3 T13: 0.0061 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.3884 L22: 0.2455 REMARK 3 L33: 0.5786 L12: 0.2214 REMARK 3 L13: 0.4099 L23: -0.1942 REMARK 3 S TENSOR REMARK 3 S11: -0.0515 S12: 0.1014 S13: 0.1014 REMARK 3 S21: -0.0262 S22: 0.0311 S23: -0.0413 REMARK 3 S31: -0.0679 S32: -0.0118 S33: 0.0204 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5181 2.4904 -3.5177 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.1120 REMARK 3 T33: 0.1134 T12: 0.0155 REMARK 3 T13: 0.0266 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.4674 L22: 1.3555 REMARK 3 L33: 6.1563 L12: -0.1925 REMARK 3 L13: -1.2247 L23: -1.9022 REMARK 3 S TENSOR REMARK 3 S11: 0.1369 S12: 0.1705 S13: 0.1551 REMARK 3 S21: -0.0995 S22: -0.0093 S23: -0.0380 REMARK 3 S31: -0.1940 S32: -0.0354 S33: -0.1276 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1472 -0.0266 6.1302 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0948 REMARK 3 T33: 0.0812 T12: 0.0030 REMARK 3 T13: -0.0067 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.7690 L22: 1.3424 REMARK 3 L33: 0.6922 L12: 0.1991 REMARK 3 L13: -0.0898 L23: -0.2209 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0148 S13: 0.0283 REMARK 3 S21: -0.0116 S22: -0.0048 S23: 0.0876 REMARK 3 S31: -0.0061 S32: -0.0617 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 52.4426 -1.5076 15.7039 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.0912 REMARK 3 T33: 0.0880 T12: 0.0033 REMARK 3 T13: 0.0027 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.2556 L22: 0.3468 REMARK 3 L33: 0.7568 L12: 0.2170 REMARK 3 L13: 0.1632 L23: -0.1177 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0972 S13: 0.0194 REMARK 3 S21: 0.0352 S22: -0.0109 S23: -0.0523 REMARK 3 S31: 0.0263 S32: 0.0073 S33: 0.0080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED. HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 3TX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 68.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 3ICO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1600MM SODIUM CITRATE, PROTEIN 51.9 REMARK 280 MG/ML, CRYO PROTECTANT 25% ETHLYENE GLYCOL, TARGET DB: REMARK 280 MYABA.01244.A.A1 PS00890, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 68.17500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 58 30.20 -141.31 REMARK 500 LEU A 92 -55.29 -145.16 REMARK 500 ASN A 155 -130.68 43.33 REMARK 500 ASP A 176 40.67 -141.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 248 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 64 O REMARK 620 2 ASN A 65 OD1 88.0 REMARK 620 3 HOH A 282 O 103.8 85.2 REMARK 620 4 HOH A 330 O 159.5 81.9 93.1 REMARK 620 5 HOH A 449 O 88.2 176.2 95.0 101.9 REMARK 620 6 HOH A 577 O 79.3 81.0 165.7 81.5 99.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 249 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 103 O REMARK 620 2 HOH A 318 O 84.9 REMARK 620 3 HOH A 319 O 91.3 169.9 REMARK 620 4 HOH A 322 O 80.3 91.1 97.5 REMARK 620 5 HOH A 473 O 87.4 85.5 84.9 167.5 REMARK 620 6 HOH A 531 O 169.3 91.0 94.2 89.8 102.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 251 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYABA.01244.A RELATED DB: TARGETDB DBREF 3TX2 A 1 247 UNP B1MC71 B1MC71_MYCA9 1 247 SEQADV 3TX2 GLY A -3 UNP B1MC71 EXPRESSION TAG SEQADV 3TX2 PRO A -2 UNP B1MC71 EXPRESSION TAG SEQADV 3TX2 GLY A -1 UNP B1MC71 EXPRESSION TAG SEQADV 3TX2 SER A 0 UNP B1MC71 EXPRESSION TAG SEQRES 1 A 251 GLY PRO GLY SER MET SER GLU THR ILE ILE GLU LYS TYR SEQRES 2 A 251 ALA ASP THR ASP ALA LEU VAL THR ALA ALA GLY ASP ARG SEQRES 3 A 251 LEU ALA SER ALA ILE THR GLY ALA LEU ALA GLU ARG GLY SEQRES 4 A 251 LYS ALA MET ILE VAL LEU THR GLY GLY GLY THR GLY ILE SEQRES 5 A 251 ALA LEU LEU LYS HIS LEU ARG ASP VAL ALA SER GLY LEU SEQRES 6 A 251 ASP TRP THR ASN VAL HIS VAL PHE TRP GLY ASP ASP ARG SEQRES 7 A 251 TYR VAL PRO LYS THR ASP PRO GLU ARG ASN ALA TRP GLN SEQRES 8 A 251 ALA TRP GLU ALA LEU LEU GLU HIS VAL ASN PHE PRO LEU SEQRES 9 A 251 ARG ASN MET HIS ALA MET PRO ASN SER GLU SER GLU TYR SEQRES 10 A 251 GLY THR ASP LEU ASP ALA ALA ALA LEU ALA TYR GLU GLN SEQRES 11 A 251 LEU LEU ALA ALA ASN ALA GLU PRO GLY GLN ASP CYS PRO SEQRES 12 A 251 ALA PHE ASP VAL HIS LEU LEU GLY MET GLY GLY GLU GLY SEQRES 13 A 251 HIS ILE ASN SER LEU PHE PRO HIS THR ASP ALA VAL LYS SEQRES 14 A 251 GLU THR GLN ARG LEU VAL VAL ALA VAL PRO ASP SER PRO SEQRES 15 A 251 LYS PRO PRO PRO GLN ARG ILE THR LEU THR LEU PRO ALA SEQRES 16 A 251 ILE GLN ARG SER ARG GLU VAL TRP LEU VAL VAL SER GLY SEQRES 17 A 251 GLU ALA LYS ALA ASP ALA VAL ALA ALA ALA VAL GLY GLY SEQRES 18 A 251 ALA ASP PRO VAL ASP VAL PRO ALA ALA GLY ALA LYS GLY SEQRES 19 A 251 ILE GLU ARG THR VAL TRP LEU LEU ASP GLU ALA ALA ALA SEQRES 20 A 251 SER GLN LEU GLY HET NA A 248 1 HET NA A 249 1 HET GOL A 250 6 HET BEZ A 251 9 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM BEZ BENZOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 BEZ C7 H6 O2 FORMUL 6 HOH *355(H2 O) HELIX 1 1 ASP A 11 GLY A 35 1 25 HELIX 2 2 GLY A 44 SER A 59 1 16 HELIX 3 3 ASP A 62 THR A 64 5 3 HELIX 4 4 ARG A 83 LEU A 92 1 10 HELIX 5 5 LEU A 93 VAL A 96 5 4 HELIX 6 6 PRO A 99 MET A 103 5 5 HELIX 7 7 ASP A 116 ASN A 131 1 16 HELIX 8 8 THR A 161 GLU A 166 1 6 HELIX 9 9 THR A 188 GLN A 193 1 6 HELIX 10 10 GLY A 204 ALA A 206 5 3 HELIX 11 11 LYS A 207 GLY A 216 1 10 HELIX 12 12 VAL A 223 ALA A 228 5 6 SHEET 1 A 6 GLU A 3 TYR A 9 0 SHEET 2 A 6 ARG A 233 ASP A 239 1 O TRP A 236 N ILE A 5 SHEET 3 A 6 GLU A 197 VAL A 202 1 N LEU A 200 O LEU A 237 SHEET 4 A 6 VAL A 143 LEU A 146 1 N LEU A 146 O VAL A 201 SHEET 5 A 6 ALA A 37 LEU A 41 1 N VAL A 40 O LEU A 145 SHEET 6 A 6 VAL A 66 TRP A 70 1 O PHE A 69 N LEU A 41 SHEET 1 B 3 ASP A 72 ARG A 74 0 SHEET 2 B 3 ARG A 184 LEU A 187 -1 O ILE A 185 N ASP A 73 SHEET 3 B 3 VAL A 171 VAL A 174 -1 N VAL A 174 O ARG A 184 LINK O THR A 64 NA NA A 248 1555 1555 2.53 LINK OD1 ASN A 65 NA NA A 248 1555 1555 2.38 LINK O MET A 103 NA NA A 249 1555 1555 2.38 LINK NA NA A 248 O HOH A 282 1555 1555 2.53 LINK NA NA A 248 O HOH A 330 1555 1555 2.39 LINK NA NA A 248 O HOH A 449 1555 1555 2.28 LINK NA NA A 248 O HOH A 577 1555 1555 2.44 LINK NA NA A 249 O HOH A 318 1555 1555 2.39 LINK NA NA A 249 O HOH A 319 1555 1555 2.37 LINK NA NA A 249 O HOH A 322 1555 1555 2.54 LINK NA NA A 249 O HOH A 473 1555 1555 2.18 LINK NA NA A 249 O HOH A 531 1555 1555 2.38 CISPEP 1 PRO A 180 PRO A 181 0 -6.58 SITE 1 AC1 6 THR A 64 ASN A 65 HOH A 282 HOH A 330 SITE 2 AC1 6 HOH A 449 HOH A 577 SITE 1 AC2 6 MET A 103 HOH A 318 HOH A 319 HOH A 322 SITE 2 AC2 6 HOH A 473 HOH A 531 SITE 1 AC3 7 HIS A 67 ARG A 101 ASN A 102 HIS A 104 SITE 2 AC3 7 ASN A 131 HOH A 289 HOH A 527 SITE 1 AC4 9 LYS A 78 ARG A 83 TRP A 86 MET A 103 SITE 2 AC4 9 ALA A 105 HOH A 264 HOH A 340 HOH A 433 SITE 3 AC4 9 HOH A 562 CRYST1 136.350 41.180 44.970 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022237 0.00000