data_3TX8 # _entry.id 3TX8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3TX8 RCSB RCSB068033 WWPDB D_1000068033 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 376512 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3TX8 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Brunger, A.T.' 2 'Terwilliger, T.C.' 3 'Read, R.J.' 4 'Adams, P.D.' 5 'Levitt, M.' 6 'Schroder, G.F.' 7 # _citation.id primary _citation.title ;Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 391 _citation.page_last 403 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22505259 _citation.pdbx_database_id_DOI 10.1107/S090744491104978X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brunger, A.T.' 1 ? primary 'Das, D.' 2 ? primary 'Deacon, A.M.' 3 ? primary 'Grant, J.' 4 ? primary 'Terwilliger, T.C.' 5 ? primary 'Read, R.J.' 6 ? primary 'Adams, P.D.' 7 ? primary 'Levitt, M.' 8 ? primary 'Schroder, G.F.' 9 ? # _cell.entry_id 3TX8 _cell.length_a 82.901 _cell.length_b 82.901 _cell.length_c 364.175 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TX8 _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Succinyl-diaminopimelate desuccinylase' 40271.184 1 3.5.1.18 'E4N, K6Q' ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SDAP desuccinylase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)NSNQPGLDLLGDPIVLTQRLVDIPSPSGQEKQIADEIEDALRNLNLPGVEVFRFNNNVLARTNRGLASRV (MSE)LAGHIDTVPIADNLPSRVEDGI(MSE)YGCGTVD(MSE)KSGLAVYLHTFATLATSTELKHDLTLIAYECEEVAD HLNGLGHIRDEHPEWLAADLALLGEPTGGWIEAGCQGNLRIKVTAHGVRAHSARSWLGDNA(MSE)HKLSPIISKVAAYK AAEVNIDGLTYREGLNIVFCESGVANNVIPDLAW(MSE)NLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWAVEDGAGG ALPGLGQQVTSGLIDAVGREKIRAKFGWTDVSRFSA(MSE)GIPALNFGAGDPSFAHKRDEQCPVEQITDVAAILKQYLS E ; _entity_poly.pdbx_seq_one_letter_code_can ;GMNSNQPGLDLLGDPIVLTQRLVDIPSPSGQEKQIADEIEDALRNLNLPGVEVFRFNNNVLARTNRGLASRVMLAGHIDT VPIADNLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATSTELKHDLTLIAYECEEVADHLNGLGHIRDEHPEWLAADL ALLGEPTGGWIEAGCQGNLRIKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEVNIDGLTYREGLNIVFCESGV ANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWAVEDGAGGALPGLGQQVTSGLIDAVGREKIRAKFGW TDVSRFSAMGIPALNFGAGDPSFAHKRDEQCPVEQITDVAAILKQYLSE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 376512 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASN n 1 4 SER n 1 5 ASN n 1 6 GLN n 1 7 PRO n 1 8 GLY n 1 9 LEU n 1 10 ASP n 1 11 LEU n 1 12 LEU n 1 13 GLY n 1 14 ASP n 1 15 PRO n 1 16 ILE n 1 17 VAL n 1 18 LEU n 1 19 THR n 1 20 GLN n 1 21 ARG n 1 22 LEU n 1 23 VAL n 1 24 ASP n 1 25 ILE n 1 26 PRO n 1 27 SER n 1 28 PRO n 1 29 SER n 1 30 GLY n 1 31 GLN n 1 32 GLU n 1 33 LYS n 1 34 GLN n 1 35 ILE n 1 36 ALA n 1 37 ASP n 1 38 GLU n 1 39 ILE n 1 40 GLU n 1 41 ASP n 1 42 ALA n 1 43 LEU n 1 44 ARG n 1 45 ASN n 1 46 LEU n 1 47 ASN n 1 48 LEU n 1 49 PRO n 1 50 GLY n 1 51 VAL n 1 52 GLU n 1 53 VAL n 1 54 PHE n 1 55 ARG n 1 56 PHE n 1 57 ASN n 1 58 ASN n 1 59 ASN n 1 60 VAL n 1 61 LEU n 1 62 ALA n 1 63 ARG n 1 64 THR n 1 65 ASN n 1 66 ARG n 1 67 GLY n 1 68 LEU n 1 69 ALA n 1 70 SER n 1 71 ARG n 1 72 VAL n 1 73 MSE n 1 74 LEU n 1 75 ALA n 1 76 GLY n 1 77 HIS n 1 78 ILE n 1 79 ASP n 1 80 THR n 1 81 VAL n 1 82 PRO n 1 83 ILE n 1 84 ALA n 1 85 ASP n 1 86 ASN n 1 87 LEU n 1 88 PRO n 1 89 SER n 1 90 ARG n 1 91 VAL n 1 92 GLU n 1 93 ASP n 1 94 GLY n 1 95 ILE n 1 96 MSE n 1 97 TYR n 1 98 GLY n 1 99 CYS n 1 100 GLY n 1 101 THR n 1 102 VAL n 1 103 ASP n 1 104 MSE n 1 105 LYS n 1 106 SER n 1 107 GLY n 1 108 LEU n 1 109 ALA n 1 110 VAL n 1 111 TYR n 1 112 LEU n 1 113 HIS n 1 114 THR n 1 115 PHE n 1 116 ALA n 1 117 THR n 1 118 LEU n 1 119 ALA n 1 120 THR n 1 121 SER n 1 122 THR n 1 123 GLU n 1 124 LEU n 1 125 LYS n 1 126 HIS n 1 127 ASP n 1 128 LEU n 1 129 THR n 1 130 LEU n 1 131 ILE n 1 132 ALA n 1 133 TYR n 1 134 GLU n 1 135 CYS n 1 136 GLU n 1 137 GLU n 1 138 VAL n 1 139 ALA n 1 140 ASP n 1 141 HIS n 1 142 LEU n 1 143 ASN n 1 144 GLY n 1 145 LEU n 1 146 GLY n 1 147 HIS n 1 148 ILE n 1 149 ARG n 1 150 ASP n 1 151 GLU n 1 152 HIS n 1 153 PRO n 1 154 GLU n 1 155 TRP n 1 156 LEU n 1 157 ALA n 1 158 ALA n 1 159 ASP n 1 160 LEU n 1 161 ALA n 1 162 LEU n 1 163 LEU n 1 164 GLY n 1 165 GLU n 1 166 PRO n 1 167 THR n 1 168 GLY n 1 169 GLY n 1 170 TRP n 1 171 ILE n 1 172 GLU n 1 173 ALA n 1 174 GLY n 1 175 CYS n 1 176 GLN n 1 177 GLY n 1 178 ASN n 1 179 LEU n 1 180 ARG n 1 181 ILE n 1 182 LYS n 1 183 VAL n 1 184 THR n 1 185 ALA n 1 186 HIS n 1 187 GLY n 1 188 VAL n 1 189 ARG n 1 190 ALA n 1 191 HIS n 1 192 SER n 1 193 ALA n 1 194 ARG n 1 195 SER n 1 196 TRP n 1 197 LEU n 1 198 GLY n 1 199 ASP n 1 200 ASN n 1 201 ALA n 1 202 MSE n 1 203 HIS n 1 204 LYS n 1 205 LEU n 1 206 SER n 1 207 PRO n 1 208 ILE n 1 209 ILE n 1 210 SER n 1 211 LYS n 1 212 VAL n 1 213 ALA n 1 214 ALA n 1 215 TYR n 1 216 LYS n 1 217 ALA n 1 218 ALA n 1 219 GLU n 1 220 VAL n 1 221 ASN n 1 222 ILE n 1 223 ASP n 1 224 GLY n 1 225 LEU n 1 226 THR n 1 227 TYR n 1 228 ARG n 1 229 GLU n 1 230 GLY n 1 231 LEU n 1 232 ASN n 1 233 ILE n 1 234 VAL n 1 235 PHE n 1 236 CYS n 1 237 GLU n 1 238 SER n 1 239 GLY n 1 240 VAL n 1 241 ALA n 1 242 ASN n 1 243 ASN n 1 244 VAL n 1 245 ILE n 1 246 PRO n 1 247 ASP n 1 248 LEU n 1 249 ALA n 1 250 TRP n 1 251 MSE n 1 252 ASN n 1 253 LEU n 1 254 ASN n 1 255 PHE n 1 256 ARG n 1 257 PHE n 1 258 ALA n 1 259 PRO n 1 260 ASN n 1 261 ARG n 1 262 ASP n 1 263 LEU n 1 264 ASN n 1 265 GLU n 1 266 ALA n 1 267 ILE n 1 268 GLU n 1 269 HIS n 1 270 VAL n 1 271 VAL n 1 272 GLU n 1 273 THR n 1 274 LEU n 1 275 GLU n 1 276 LEU n 1 277 ASP n 1 278 GLY n 1 279 GLN n 1 280 ASP n 1 281 GLY n 1 282 ILE n 1 283 GLU n 1 284 TRP n 1 285 ALA n 1 286 VAL n 1 287 GLU n 1 288 ASP n 1 289 GLY n 1 290 ALA n 1 291 GLY n 1 292 GLY n 1 293 ALA n 1 294 LEU n 1 295 PRO n 1 296 GLY n 1 297 LEU n 1 298 GLY n 1 299 GLN n 1 300 GLN n 1 301 VAL n 1 302 THR n 1 303 SER n 1 304 GLY n 1 305 LEU n 1 306 ILE n 1 307 ASP n 1 308 ALA n 1 309 VAL n 1 310 GLY n 1 311 ARG n 1 312 GLU n 1 313 LYS n 1 314 ILE n 1 315 ARG n 1 316 ALA n 1 317 LYS n 1 318 PHE n 1 319 GLY n 1 320 TRP n 1 321 THR n 1 322 ASP n 1 323 VAL n 1 324 SER n 1 325 ARG n 1 326 PHE n 1 327 SER n 1 328 ALA n 1 329 MSE n 1 330 GLY n 1 331 ILE n 1 332 PRO n 1 333 ALA n 1 334 LEU n 1 335 ASN n 1 336 PHE n 1 337 GLY n 1 338 ALA n 1 339 GLY n 1 340 ASP n 1 341 PRO n 1 342 SER n 1 343 PHE n 1 344 ALA n 1 345 HIS n 1 346 LYS n 1 347 ARG n 1 348 ASP n 1 349 GLU n 1 350 GLN n 1 351 CYS n 1 352 PRO n 1 353 VAL n 1 354 GLU n 1 355 GLN n 1 356 ILE n 1 357 THR n 1 358 ASP n 1 359 VAL n 1 360 ALA n 1 361 ALA n 1 362 ILE n 1 363 LEU n 1 364 LYS n 1 365 GLN n 1 366 TYR n 1 367 LEU n 1 368 SER n 1 369 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dapE, Cgl1109, cg1260' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Corynebacterium glutamicum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1718 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 13032 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DAPE_CORGL _struct_ref.pdbx_db_accession Q59284 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNSELKPGLDLLGDPIVLTQRLVDIPSPSGQEKQIADEIEDALRNLNLPGVEVFRFNNNVLARTNRGLASRVMLAGHIDT VPIADNLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATSTELKHDLTLIAYECEEVADHLNGLGHIRDEHPEWLAADL ALLGEPTGGWIEAGCQGNLRIKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEVNIDGLTYREGLNIVFCESGV ANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWAVEDGAGGALPGLGQQVTSGLIDAVGREKIRAKFGW TDVSRFSAMGIPALNFGAGDPSFAHKRDEQCPVEQITDVAAILKQYLSE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TX8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 369 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q59284 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 369 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 369 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TX8 GLY A 1 ? UNP Q59284 ? ? 'LEADER SEQUENCE' 0 1 1 3TX8 ASN A 5 ? UNP Q59284 GLU 4 'SEE REMARK 999' 4 2 1 3TX8 ? A ? ? UNP Q59284 LEU 5 'SEE REMARK 999' ? 3 1 3TX8 GLN A 6 ? UNP Q59284 LYS 6 'SEE REMARK 999' 6 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3TX8 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.47 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 72.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.41 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;43.1% polyethylene glycol 400, 0.20M sodium chloride, 0.1M Na/K phosphate pH 6.41, Additive: 0.006 M zinc chloride, nanodrop, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2010-05-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97919 1.0 3 0.97936 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97919,0.97936 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3TX8 _reflns.d_resolution_high 2.97 _reflns.d_resolution_low 29.543 _reflns.number_obs 16179 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.percent_possible_obs 99.1 _reflns.B_iso_Wilson_estimate 91.327 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.97 3.05 5424 ? 1137 1.248 1.5 ? ? 4.8 ? ? 98.5 1 1 3.05 3.13 5284 ? 1118 0.939 1.9 ? ? 4.7 ? ? 98.1 2 1 3.13 3.22 5127 ? 1091 0.690 2.6 ? ? 4.7 ? ? 98.7 3 1 3.22 3.32 5026 ? 1074 0.531 3.1 ? ? 4.7 ? ? 99.0 4 1 3.32 3.43 4807 ? 1025 0.419 4.0 ? ? 4.7 ? ? 98.6 5 1 3.43 3.55 4679 ? 993 0.284 5.6 ? ? 4.7 ? ? 98.9 6 1 3.55 3.69 4565 ? 978 0.210 7.2 ? ? 4.7 ? ? 99.4 7 1 3.69 3.84 4379 ? 953 0.167 8.8 ? ? 4.6 ? ? 99.4 8 1 3.84 4.01 4216 ? 915 0.127 11.3 ? ? 4.6 ? ? 99.5 9 1 4.01 4.20 4017 ? 878 0.095 14.3 ? ? 4.6 ? ? 99.9 10 1 4.20 4.43 3723 ? 817 0.073 17.9 ? ? 4.6 ? ? 99.2 11 1 4.43 4.70 3671 ? 808 0.057 21.0 ? ? 4.5 ? ? 99.2 12 1 4.70 5.02 3418 ? 754 0.058 22.9 ? ? 4.5 ? ? 99.8 13 1 5.02 5.43 3181 ? 718 0.051 22.8 ? ? 4.4 ? ? 99.8 14 1 5.43 5.94 2956 ? 676 0.052 23.6 ? ? 4.4 ? ? 99.9 15 1 5.94 6.65 2616 ? 600 0.053 23.8 ? ? 4.4 ? ? 99.7 16 1 6.65 7.67 2326 ? 547 0.042 29.6 ? ? 4.3 ? ? 100.0 17 1 7.67 9.40 1962 ? 485 0.031 37.3 ? ? 4.0 ? ? 100.0 18 1 9.40 13.29 1518 ? 394 0.027 40.8 ? ? 3.9 ? ? 100.0 19 1 13.29 29.54 728 ? 218 0.031 37.4 ? ? 3.3 ? ? 87.9 20 1 # _refine.entry_id 3TX8 _refine.ls_d_res_high 2.972 _refine.ls_d_res_low 29.543 _refine.pdbx_ls_sigma_F 1.87 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.07 _refine.ls_number_reflns_obs 16098 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. PHOSPHATE (PO4) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION SOLUTION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 4. THE STRUCTURE WAS SOLVED BY A COMBINATION OF MOLECULAR REPLACEMENT USING PHASER AND DEN REFINEMENT IN CNS, IN CONJUCTION WITH MODELLER, AUTOBUILD AND EXPERIMENTAL PHASING WITH SE MAD PHASES 5.THE REFINEMENT WAS RESTRAINED WITH THE MAD PHASES. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2399 _refine.ls_R_factor_R_work 0.2379 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2566 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.24 _refine.ls_number_reflns_R_free 1649 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 99.6661 _refine.solvent_model_param_bsol 62.72 _refine.solvent_model_param_ksol 0.342 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 18.0032 _refine.aniso_B[2][2] 18.0032 _refine.aniso_B[3][3] -36.0064 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.7100 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8300 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1VGY _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT + MAD' _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 181.590 _refine.B_iso_min 32.710 _refine.pdbx_overall_phase_error 28.120 _refine.occupancy_max 1.000 _refine.occupancy_min 0.750 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2744 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2750 _refine_hist.d_res_high 2.972 _refine_hist.d_res_low 29.543 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2801 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3809 0.625 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 430 0.047 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 505 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1011 11.380 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.9725 3.0599 12 98.0 1155 . 0.3619 0.3683 . 131 . 1286 . . 'X-RAY DIFFRACTION' 3.0599 3.1585 12 98.0 1140 . 0.3826 0.4425 . 130 . 1270 . . 'X-RAY DIFFRACTION' 3.1585 3.2713 12 99.0 1172 . 0.3329 0.4001 . 135 . 1307 . . 'X-RAY DIFFRACTION' 3.2713 3.4021 12 98.0 1154 . 0.3134 0.3394 . 133 . 1287 . . 'X-RAY DIFFRACTION' 3.4021 3.5567 12 99.0 1198 . 0.2783 0.3026 . 117 . 1315 . . 'X-RAY DIFFRACTION' 3.5567 3.7438 12 99.0 1185 . 0.2611 0.2551 . 138 . 1323 . . 'X-RAY DIFFRACTION' 3.7438 3.9779 12 99.0 1199 . 0.2512 0.2829 . 131 . 1330 . . 'X-RAY DIFFRACTION' 3.9779 4.2842 12 100.0 1197 . 0.2116 0.2350 . 135 . 1332 . . 'X-RAY DIFFRACTION' 4.2842 4.7137 12 99.0 1213 . 0.1840 0.2223 . 129 . 1342 . . 'X-RAY DIFFRACTION' 4.7137 5.3922 12 100.0 1220 . 0.1949 0.2156 . 154 . 1374 . . 'X-RAY DIFFRACTION' 5.3922 6.7801 12 100.0 1257 . 0.2313 0.2512 . 153 . 1410 . . 'X-RAY DIFFRACTION' 6.7801 29.5477 12 99.0 1359 . 0.2216 0.2159 . 163 . 1522 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3TX8 _struct.title ;Crystal structure of a succinyl-diaminopimelate desuccinylase (ArgE) from Corynebacterium glutamicum ATCC 13032 at 2.97 A resolution ; _struct.pdbx_descriptor 'Succinyl-diaminopimelate desuccinylase (E.C.3.5.1.18)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'peptidase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3TX8 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 14 ? ASP A 24 ? ASP A 14 ASP A 24 1 ? 11 HELX_P HELX_P2 2 GLU A 32 ? ASN A 45 ? GLU A 32 ASN A 45 1 ? 14 HELX_P HELX_P3 3 MSE A 104 ? ALA A 119 ? MSE A 104 ALA A 119 1 ? 16 HELX_P HELX_P4 4 ASN A 143 ? HIS A 152 ? ASN A 143 HIS A 152 1 ? 10 HELX_P HELX_P5 5 PRO A 153 ? ALA A 157 ? PRO A 153 ALA A 157 5 ? 5 HELX_P HELX_P6 6 ARG A 194 ? GLY A 198 ? ARG A 194 GLY A 198 5 ? 5 HELX_P HELX_P7 7 ALA A 201 ? LYS A 204 ? ALA A 201 LYS A 204 5 ? 4 HELX_P HELX_P8 8 LEU A 205 ? TYR A 215 ? LEU A 205 TYR A 215 1 ? 11 HELX_P HELX_P9 9 ASP A 262 ? LEU A 274 ? ASP A 262 LEU A 274 1 ? 13 HELX_P HELX_P10 10 GLN A 299 ? GLY A 310 ? GLN A 299 GLY A 310 1 ? 12 HELX_P HELX_P11 11 ASP A 322 ? ALA A 328 ? ASP A 322 ALA A 328 1 ? 7 HELX_P HELX_P12 12 VAL A 353 ? GLU A 369 ? VAL A 353 GLU A 369 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A VAL 72 C ? ? ? 1_555 A MSE 73 N ? ? A VAL 72 A MSE 73 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale both ? A MSE 73 C ? ? ? 1_555 A LEU 74 N ? ? A MSE 73 A LEU 74 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale both ? A ILE 95 C ? ? ? 1_555 A MSE 96 N ? ? A ILE 95 A MSE 96 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale both ? A MSE 96 C ? ? ? 1_555 A TYR 97 N ? ? A MSE 96 A TYR 97 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale both ? A ASP 103 C ? ? ? 1_555 A MSE 104 N ? ? A ASP 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale both ? A MSE 104 C ? ? ? 1_555 A LYS 105 N ? ? A MSE 104 A LYS 105 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale both ? A ALA 201 C ? ? ? 1_555 A MSE 202 N ? ? A ALA 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale both ? A MSE 202 C ? ? ? 1_555 A HIS 203 N ? ? A MSE 202 A HIS 203 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale both ? A TRP 250 C ? ? ? 1_555 A MSE 251 N ? ? A TRP 250 A MSE 251 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale both ? A MSE 251 C ? ? ? 1_555 A ASN 252 N ? ? A MSE 251 A ASN 252 1_555 ? ? ? ? ? ? ? 1.327 ? covale11 covale both ? A ALA 328 C ? ? ? 1_555 A MSE 329 N ? ? A ALA 328 A MSE 329 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale both ? A MSE 329 C ? ? ? 1_555 A GLY 330 N ? ? A MSE 329 A GLY 330 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 87 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 87 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 88 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 88 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.78 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 3 ? C ? 4 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 52 ? PHE A 56 ? GLU A 52 PHE A 56 A 2 ASN A 59 ? ARG A 63 ? ASN A 59 ARG A 63 A 3 ASP A 127 ? TYR A 133 ? ASP A 127 TYR A 133 A 4 ARG A 71 ? HIS A 77 ? ARG A 71 HIS A 77 A 5 LEU A 160 ? LEU A 163 ? LEU A 160 LEU A 163 A 6 ALA A 333 ? PHE A 336 ? ALA A 333 PHE A 336 A 7 ILE A 171 ? ALA A 173 ? ILE A 171 ALA A 173 A 8 ILE A 314 ? ALA A 316 ? ILE A 314 ALA A 316 B 1 ARG A 90 ? VAL A 91 ? ARG A 90 VAL A 91 B 2 ILE A 95 ? TYR A 97 ? ILE A 95 TYR A 97 B 3 GLN A 350 ? PRO A 352 ? GLN A 350 PRO A 352 C 1 GLY A 230 ? SER A 238 ? GLY A 230 SER A 238 C 2 LEU A 248 ? PHE A 257 ? LEU A 248 PHE A 257 C 3 GLY A 177 ? HIS A 186 ? GLY A 177 HIS A 186 C 4 ILE A 282 ? ALA A 290 ? ILE A 282 ALA A 290 D 1 GLU A 219 ? ILE A 222 ? GLU A 219 ILE A 222 D 2 LEU A 225 ? ARG A 228 ? LEU A 225 ARG A 228 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 54 ? N PHE A 54 O LEU A 61 ? O LEU A 61 A 2 3 N ALA A 62 ? N ALA A 62 O LEU A 130 ? O LEU A 130 A 3 4 O THR A 129 ? O THR A 129 N LEU A 74 ? N LEU A 74 A 4 5 N MSE A 73 ? N MSE A 73 O LEU A 160 ? O LEU A 160 A 5 6 N LEU A 163 ? N LEU A 163 O LEU A 334 ? O LEU A 334 A 6 7 O ASN A 335 ? O ASN A 335 N GLU A 172 ? N GLU A 172 A 7 8 N ALA A 173 ? N ALA A 173 O ARG A 315 ? O ARG A 315 B 1 2 N ARG A 90 ? N ARG A 90 O TYR A 97 ? O TYR A 97 B 2 3 N MSE A 96 ? N MSE A 96 O CYS A 351 ? O CYS A 351 C 1 2 N GLY A 230 ? N GLY A 230 O ARG A 256 ? O ARG A 256 C 2 3 O PHE A 255 ? O PHE A 255 N LEU A 179 ? N LEU A 179 C 3 4 N THR A 184 ? N THR A 184 O GLU A 283 ? O GLU A 283 D 1 2 N ILE A 222 ? N ILE A 222 O LEU A 225 ? O LEU A 225 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 A 401' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 191 ? HIS A 191 . ? 12_565 ? 2 AC1 4 ASN A 243 ? ASN A 243 . ? 12_565 ? 3 AC1 4 ARG A 256 ? ARG A 256 . ? 1_555 ? 4 AC1 4 TRP A 320 ? TRP A 320 . ? 1_555 ? 5 AC2 2 PHE A 318 ? PHE A 318 . ? 1_555 ? 6 AC2 2 GLY A 319 ? GLY A 319 . ? 1_555 ? # _atom_sites.entry_id 3TX8 _atom_sites.fract_transf_matrix[1][1] 0.012063 _atom_sites.fract_transf_matrix[1][2] 0.006964 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013929 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002746 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ASN 3 2 ? ? ? A . n A 1 4 SER 4 3 ? ? ? A . n A 1 5 ASN 5 4 ? ? ? A . n A 1 6 GLN 6 6 ? ? ? A . n A 1 7 PRO 7 7 ? ? ? A . n A 1 8 GLY 8 8 ? ? ? A . n A 1 9 LEU 9 9 ? ? ? A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 MSE 73 73 73 MSE MSE A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 MSE 96 96 96 MSE MSE A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 MSE 104 104 104 MSE MSE A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 HIS 113 113 113 HIS HIS A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 CYS 135 135 135 CYS CYS A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 HIS 141 141 141 HIS HIS A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 PRO 153 153 153 PRO PRO A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 TRP 155 155 155 TRP TRP A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 PRO 166 166 166 PRO PRO A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 TRP 170 170 170 TRP TRP A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 CYS 175 175 175 CYS CYS A . n A 1 176 GLN 176 176 176 GLN GLN A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 ASN 178 178 178 ASN ASN A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 HIS 186 186 186 HIS HIS A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 ARG 189 189 189 ARG ARG A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 HIS 191 191 191 HIS HIS A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 TRP 196 196 196 TRP TRP A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 MSE 202 202 202 MSE MSE A . n A 1 203 HIS 203 203 203 HIS HIS A . n A 1 204 LYS 204 204 204 LYS LYS A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 SER 206 206 206 SER SER A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 LYS 211 211 211 LYS LYS A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 TYR 215 215 215 TYR TYR A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 ILE 222 222 222 ILE ILE A . n A 1 223 ASP 223 223 223 ASP ASP A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 TYR 227 227 227 TYR TYR A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 GLU 229 229 229 GLU GLU A . n A 1 230 GLY 230 230 230 GLY GLY A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 ASN 232 232 232 ASN ASN A . n A 1 233 ILE 233 233 233 ILE ILE A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 PHE 235 235 235 PHE PHE A . n A 1 236 CYS 236 236 236 CYS CYS A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 SER 238 238 238 SER SER A . n A 1 239 GLY 239 239 239 GLY GLY A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 ASN 242 242 242 ASN ASN A . n A 1 243 ASN 243 243 243 ASN ASN A . n A 1 244 VAL 244 244 244 VAL VAL A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 PRO 246 246 246 PRO PRO A . n A 1 247 ASP 247 247 247 ASP ASP A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 ALA 249 249 249 ALA ALA A . n A 1 250 TRP 250 250 250 TRP TRP A . n A 1 251 MSE 251 251 251 MSE MSE A . n A 1 252 ASN 252 252 252 ASN ASN A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 PHE 255 255 255 PHE PHE A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 PHE 257 257 257 PHE PHE A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 PRO 259 259 259 PRO PRO A . n A 1 260 ASN 260 260 260 ASN ASN A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 ASP 262 262 262 ASP ASP A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 ASN 264 264 264 ASN ASN A . n A 1 265 GLU 265 265 265 GLU GLU A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 GLU 268 268 268 GLU GLU A . n A 1 269 HIS 269 269 269 HIS HIS A . n A 1 270 VAL 270 270 270 VAL VAL A . n A 1 271 VAL 271 271 271 VAL VAL A . n A 1 272 GLU 272 272 272 GLU GLU A . n A 1 273 THR 273 273 273 THR THR A . n A 1 274 LEU 274 274 274 LEU LEU A . n A 1 275 GLU 275 275 275 GLU GLU A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 GLY 278 278 278 GLY GLY A . n A 1 279 GLN 279 279 279 GLN GLN A . n A 1 280 ASP 280 280 280 ASP ASP A . n A 1 281 GLY 281 281 281 GLY GLY A . n A 1 282 ILE 282 282 282 ILE ILE A . n A 1 283 GLU 283 283 283 GLU GLU A . n A 1 284 TRP 284 284 284 TRP TRP A . n A 1 285 ALA 285 285 285 ALA ALA A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 GLU 287 287 287 GLU GLU A . n A 1 288 ASP 288 288 288 ASP ASP A . n A 1 289 GLY 289 289 289 GLY GLY A . n A 1 290 ALA 290 290 290 ALA ALA A . n A 1 291 GLY 291 291 291 GLY GLY A . n A 1 292 GLY 292 292 292 GLY GLY A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 LEU 294 294 294 LEU LEU A . n A 1 295 PRO 295 295 295 PRO PRO A . n A 1 296 GLY 296 296 296 GLY GLY A . n A 1 297 LEU 297 297 297 LEU LEU A . n A 1 298 GLY 298 298 298 GLY GLY A . n A 1 299 GLN 299 299 299 GLN GLN A . n A 1 300 GLN 300 300 300 GLN GLN A . n A 1 301 VAL 301 301 301 VAL VAL A . n A 1 302 THR 302 302 302 THR THR A . n A 1 303 SER 303 303 303 SER SER A . n A 1 304 GLY 304 304 304 GLY GLY A . n A 1 305 LEU 305 305 305 LEU LEU A . n A 1 306 ILE 306 306 306 ILE ILE A . n A 1 307 ASP 307 307 307 ASP ASP A . n A 1 308 ALA 308 308 308 ALA ALA A . n A 1 309 VAL 309 309 309 VAL VAL A . n A 1 310 GLY 310 310 310 GLY GLY A . n A 1 311 ARG 311 311 311 ARG ARG A . n A 1 312 GLU 312 312 312 GLU GLU A . n A 1 313 LYS 313 313 313 LYS LYS A . n A 1 314 ILE 314 314 314 ILE ILE A . n A 1 315 ARG 315 315 315 ARG ARG A . n A 1 316 ALA 316 316 316 ALA ALA A . n A 1 317 LYS 317 317 317 LYS LYS A . n A 1 318 PHE 318 318 318 PHE PHE A . n A 1 319 GLY 319 319 319 GLY GLY A . n A 1 320 TRP 320 320 320 TRP TRP A . n A 1 321 THR 321 321 321 THR THR A . n A 1 322 ASP 322 322 322 ASP ASP A . n A 1 323 VAL 323 323 323 VAL VAL A . n A 1 324 SER 324 324 324 SER SER A . n A 1 325 ARG 325 325 325 ARG ARG A . n A 1 326 PHE 326 326 326 PHE PHE A . n A 1 327 SER 327 327 327 SER SER A . n A 1 328 ALA 328 328 328 ALA ALA A . n A 1 329 MSE 329 329 329 MSE MSE A . n A 1 330 GLY 330 330 330 GLY GLY A . n A 1 331 ILE 331 331 331 ILE ILE A . n A 1 332 PRO 332 332 332 PRO PRO A . n A 1 333 ALA 333 333 333 ALA ALA A . n A 1 334 LEU 334 334 334 LEU LEU A . n A 1 335 ASN 335 335 335 ASN ASN A . n A 1 336 PHE 336 336 336 PHE PHE A . n A 1 337 GLY 337 337 337 GLY GLY A . n A 1 338 ALA 338 338 338 ALA ALA A . n A 1 339 GLY 339 339 339 GLY GLY A . n A 1 340 ASP 340 340 340 ASP ASP A . n A 1 341 PRO 341 341 341 PRO PRO A . n A 1 342 SER 342 342 342 SER SER A . n A 1 343 PHE 343 343 343 PHE PHE A . n A 1 344 ALA 344 344 344 ALA ALA A . n A 1 345 HIS 345 345 345 HIS HIS A . n A 1 346 LYS 346 346 346 LYS LYS A . n A 1 347 ARG 347 347 347 ARG ARG A . n A 1 348 ASP 348 348 348 ASP ASP A . n A 1 349 GLU 349 349 349 GLU GLU A . n A 1 350 GLN 350 350 350 GLN GLN A . n A 1 351 CYS 351 351 351 CYS CYS A . n A 1 352 PRO 352 352 352 PRO PRO A . n A 1 353 VAL 353 353 353 VAL VAL A . n A 1 354 GLU 354 354 354 GLU GLU A . n A 1 355 GLN 355 355 355 GLN GLN A . n A 1 356 ILE 356 356 356 ILE ILE A . n A 1 357 THR 357 357 357 THR THR A . n A 1 358 ASP 358 358 358 ASP ASP A . n A 1 359 VAL 359 359 359 VAL VAL A . n A 1 360 ALA 360 360 360 ALA ALA A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 ILE 362 362 362 ILE ILE A . n A 1 363 LEU 363 363 363 LEU LEU A . n A 1 364 LYS 364 364 364 LYS LYS A . n A 1 365 GLN 365 365 365 GLN GLN A . n A 1 366 TYR 366 366 366 TYR TYR A . n A 1 367 LEU 367 367 367 LEU LEU A . n A 1 368 SER 368 368 368 SER SER A . n A 1 369 GLU 369 369 369 GLU GLU A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 401 401 PO4 PO4 A . C 3 CL 1 402 402 CL CL A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 73 A MSE 73 ? MET SELENOMETHIONINE 2 A MSE 96 A MSE 96 ? MET SELENOMETHIONINE 3 A MSE 104 A MSE 104 ? MET SELENOMETHIONINE 4 A MSE 202 A MSE 202 ? MET SELENOMETHIONINE 5 A MSE 251 A MSE 251 ? MET SELENOMETHIONINE 6 A MSE 329 A MSE 329 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3990 ? 1 MORE -52 ? 1 'SSA (A^2)' 27720 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+5/6 0.5000000000 0.8660254038 0.0000000000 -41.4505000000 0.8660254038 -0.5000000000 0.0000000000 71.7943719991 0.0000000000 0.0000000000 -1.0000000000 303.4791666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-26 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2012-10-10 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_software.classification' 4 5 'Structure model' '_software.contact_author' 5 5 'Structure model' '_software.contact_author_email' 6 5 'Structure model' '_software.language' 7 5 'Structure model' '_software.location' 8 5 'Structure model' '_software.name' 9 5 'Structure model' '_software.version' 10 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 7.0580 45.9960 191.6712 0.4078 0.8337 0.3887 -0.0300 0.0415 0.1304 2.4425 2.3110 2.1614 -0.3795 0.1714 0.5488 0.1903 -0.1181 0.0007 -0.2721 -0.0156 -0.0426 0.2171 -0.3184 -0.2443 'X-RAY DIFFRACTION' 2 ? refined -5.4184 36.5320 158.8134 0.2353 0.5285 0.5478 -0.0442 0.0371 0.0774 1.1638 2.1730 0.8309 0.0513 1.2164 -0.1429 -0.1797 0.2896 0.0244 -0.2428 -0.3350 0.0783 -0.1778 0.4140 0.0325 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 10 A 175 'chain A and (resseq 10:175 or resseq 293:369)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 293 A 369 'chain A and (resseq 10:175 or resseq 293:369)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 176 A 292 'chain A and (resseq 176:292)' ? ? ? ? ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.7.1 ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 XSCALE 'January 30, 2009' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 4 PHASER 2.3.0 ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 5 CNS 1.3 ? package 'Axel T. Brunger' axel.brunger@yale.edu phasing http://cns-online.org/ Fortran_77 ? 6 CNS 1.3 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 7 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 8 XDS . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 3TX8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS CLEAVED WITH TEV PROTEASE LEAVING GLY(0) FOLLOWED BY THE TARGET SEQUENCE. 2. DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS TWO AMINO ACID SUBSTITUTIONS (E4N AND K6Q) AND ONE AMINO ACID DELETION (L5DEL), WHEN COMPARED TO THE AVAILABLE GENBANK SEQUENCE (NP_600337.1) FROM CORYNEBACTERIUM GLUTAMICUM 534 (ATCC 13032). ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 11 ? ? -74.12 -72.27 2 1 LEU A 12 ? ? 74.44 -4.77 3 1 SER A 29 ? ? -37.73 129.05 4 1 ASN A 57 ? ? 57.50 -123.05 5 1 ARG A 66 ? ? -92.67 34.51 6 1 LEU A 68 ? ? 59.40 153.66 7 1 ALA A 69 ? ? -74.61 -95.32 8 1 PRO A 82 ? ? -36.35 124.96 9 1 ASP A 93 ? ? 56.91 76.85 10 1 MSE A 104 ? ? 88.36 -52.05 11 1 ALA A 139 ? ? -38.54 142.57 12 1 ASP A 140 ? ? -68.82 64.52 13 1 HIS A 141 ? ? -150.69 3.59 14 1 PRO A 259 ? ? -59.35 -2.61 15 1 SER A 342 ? ? -69.26 -168.64 16 1 PHE A 343 ? ? 53.15 13.99 17 1 ALA A 344 ? ? -52.55 -71.48 18 1 ARG A 347 ? ? -74.23 47.00 19 1 ASP A 348 ? ? -178.66 47.59 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ASN 2 ? A ASN 3 4 1 Y 1 A SER 3 ? A SER 4 5 1 Y 1 A ASN 4 ? A ASN 5 6 1 Y 1 A GLN 6 ? A GLN 6 7 1 Y 1 A PRO 7 ? A PRO 7 8 1 Y 1 A GLY 8 ? A GLY 8 9 1 Y 1 A LEU 9 ? A LEU 9 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 'CHLORIDE ION' CL #