HEADER HYDROLASE, PROTEIN BINDING 23-SEP-11 3TXM TITLE CRYSTAL STRUCTURE OF RPN6 FROM DROSOPHILA MELANOGASTER, GD(3+) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-422; COMPND 5 SYNONYM: BCDNA.LD18931, PROTEASOME P44.5 SUBUNIT, ISOFORM B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: BCDNA.LD18931, CG10149, DMEL_CG10149, RPN6; SOURCE 6 EXPRESSION_SYSTEM: RHODOCOCCUS ERYTHROPOLIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1833; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: L-88; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTIPRC1 KEYWDS 26 S PROTEASOME, PCI DOMAIN, ALPHA SOLENOID, REGULATORY PARTICLE, KEYWDS 2 LID, HYDROLASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.R.PATHARE,A.BRACHER REVDAT 4 28-FEB-24 3TXM 1 REMARK SEQADV LINK REVDAT 3 01-FEB-12 3TXM 1 JRNL REVDAT 2 11-JAN-12 3TXM 1 JRNL REVDAT 1 14-DEC-11 3TXM 0 JRNL AUTH G.R.PATHARE,I.NAGY,S.BOHN,P.UNVERDORBEN,A.HUBERT,R.KORNER, JRNL AUTH 2 S.NICKELL,K.LASKER,A.SALI,T.TAMURA,T.NISHIOKA,F.FORSTER, JRNL AUTH 3 W.BAUMEISTER,A.BRACHER JRNL TITL THE PROTEASOMAL SUBUNIT RPN6 IS A MOLECULAR CLAMP HOLDING JRNL TITL 2 THE CORE AND REGULATORY SUBCOMPLEXES TOGETHER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 149 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22187461 JRNL DOI 10.1073/PNAS.1117648108 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 638 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 656 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : -1.84000 REMARK 3 B33 (A**2) : 2.76000 REMARK 3 B12 (A**2) : -0.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.340 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.853 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2761 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3730 ; 1.384 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;38.361 ;25.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;20.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.694 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2011 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1346 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1921 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1794 ; 0.498 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2797 ; 0.936 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 1.193 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 933 ; 2.116 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 280 REMARK 3 RESIDUE RANGE : A 1 A 2 REMARK 3 RESIDUE RANGE : A 423 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9299 148.6497 16.5850 REMARK 3 T TENSOR REMARK 3 T11: -0.3072 T22: 0.4327 REMARK 3 T33: -0.3641 T12: -0.0655 REMARK 3 T13: -0.0005 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 9.0919 L22: 2.3896 REMARK 3 L33: 1.5379 L12: 0.0699 REMARK 3 L13: 2.1699 L23: -0.3976 REMARK 3 S TENSOR REMARK 3 S11: -0.2734 S12: 0.4587 S13: 0.6259 REMARK 3 S21: -0.0619 S22: 0.0656 S23: -0.3013 REMARK 3 S31: -0.3049 S32: 0.4314 S33: 0.2077 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 281 A 390 REMARK 3 RESIDUE RANGE : A 3 A 4 REMARK 3 RESIDUE RANGE : A 424 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): -49.7986 137.5650 22.6441 REMARK 3 T TENSOR REMARK 3 T11: -0.4275 T22: -0.1569 REMARK 3 T33: -0.5088 T12: 0.0506 REMARK 3 T13: -0.0366 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 19.8311 L22: 3.2733 REMARK 3 L33: 2.3620 L12: 2.1640 REMARK 3 L13: -2.7493 L23: -0.9595 REMARK 3 S TENSOR REMARK 3 S11: -0.2069 S12: -0.4488 S13: -0.0934 REMARK 3 S21: 0.1060 S22: -0.0309 S23: 0.2739 REMARK 3 S31: 0.1838 S32: 0.9674 S33: 0.2378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332, 1.71024, 1.71072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12435 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 140.218 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : 0.48900 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, RESOLVE 2.13, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS HCL PH 7.5 200 MM LI2SO4, REMARK 280 12% PEG-3350, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.05333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.04000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.06667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.01333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 VAL A 30 REMARK 465 ARG A 31 REMARK 465 ASP A 32 REMARK 465 GLN A 33 REMARK 465 GLU A 34 REMARK 465 GLY A 35 REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 THR A 391 REMARK 465 PRO A 392 REMARK 465 VAL A 393 REMARK 465 ASP A 394 REMARK 465 LYS A 395 REMARK 465 THR A 396 REMARK 465 TYR A 397 REMARK 465 GLU A 398 REMARK 465 ARG A 399 REMARK 465 VAL A 400 REMARK 465 LEU A 401 REMARK 465 GLU A 402 REMARK 465 THR A 403 REMARK 465 ILE A 404 REMARK 465 GLN A 405 REMARK 465 SER A 406 REMARK 465 MET A 407 REMARK 465 GLY A 408 REMARK 465 LYS A 409 REMARK 465 VAL A 410 REMARK 465 VAL A 411 REMARK 465 ASP A 412 REMARK 465 THR A 413 REMARK 465 LEU A 414 REMARK 465 TYR A 415 REMARK 465 GLN A 416 REMARK 465 LYS A 417 REMARK 465 ALA A 418 REMARK 465 LYS A 419 REMARK 465 LYS A 420 REMARK 465 LEU A 421 REMARK 465 SER A 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 GLN A 119 CG CD OE1 NE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 PHE A 124 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 GLU A 390 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 73.17 -118.43 REMARK 500 ASP A 98 47.17 -100.38 REMARK 500 THR A 103 -52.72 -19.28 REMARK 500 GLN A 119 17.42 -69.88 REMARK 500 GLU A 120 -4.70 -141.38 REMARK 500 ARG A 122 78.15 -106.61 REMARK 500 ASP A 162 80.89 45.04 REMARK 500 SER A 181 6.62 81.94 REMARK 500 SER A 241 -9.23 91.03 REMARK 500 VAL A 242 -76.62 -99.47 REMARK 500 GLN A 263 41.29 -100.81 REMARK 500 LYS A 274 -38.46 -38.13 REMARK 500 THR A 278 -28.39 -27.41 REMARK 500 LEU A 313 -73.51 -121.87 REMARK 500 LYS A 372 17.11 55.17 REMARK 500 SER A 375 76.38 -107.53 REMARK 500 GLU A 382 30.35 -81.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD3 A 1 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 265 OD1 REMARK 620 2 ASP A 266 OD1 61.5 REMARK 620 3 ASP A 266 OD2 83.1 52.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD3 A 2 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 234 OE2 REMARK 620 2 GLU A 234 OE1 47.0 REMARK 620 3 GLU A 237 OE1 97.9 95.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD3 A 4 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 308 OE2 REMARK 620 2 GLU A 308 OE1 42.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD3 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD3 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD3 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD3 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TXN RELATED DB: PDB DBREF 3TXM A 30 422 UNP Q7KLV9 Q7KLV9_DROME 30 422 SEQADV 3TXM GLY A 29 UNP Q7KLV9 EXPRESSION TAG SEQRES 1 A 394 GLY VAL ARG ASP GLN GLU GLY ALA GLU ASN ASP GLU GLU SEQRES 2 A 394 ARG ILE ARG ILE LYS GLU GLN GLY ILE LEU GLN GLN GLY SEQRES 3 A 394 GLU LEU TYR LYS GLN GLU GLY LYS ALA LYS GLU LEU ALA SEQRES 4 A 394 ASP LEU ILE LYS VAL THR ARG PRO PHE LEU SER SER ILE SEQRES 5 A 394 SER LYS ALA LYS ALA ALA LYS LEU VAL ARG SER LEU VAL SEQRES 6 A 394 ASP MET PHE LEU ASP MET ASP ALA GLY THR GLY ILE GLU SEQRES 7 A 394 VAL GLN LEU CYS LYS ASP CYS ILE GLU TRP ALA LYS GLN SEQRES 8 A 394 GLU LYS ARG THR PHE LEU ARG GLN SER LEU GLU ALA ARG SEQRES 9 A 394 LEU ILE ALA LEU TYR PHE ASP THR ALA LEU TYR THR GLU SEQRES 10 A 394 ALA LEU ALA LEU GLY ALA GLN LEU LEU ARG GLU LEU LYS SEQRES 11 A 394 LYS LEU ASP ASP LYS ASN LEU LEU VAL GLU VAL GLN LEU SEQRES 12 A 394 LEU GLU SER LYS THR TYR HIS ALA LEU SER ASN LEU PRO SEQRES 13 A 394 LYS ALA ARG ALA ALA LEU THR SER ALA ARG THR THR ALA SEQRES 14 A 394 ASN ALA ILE TYR CYS PRO PRO LYS VAL GLN GLY ALA LEU SEQRES 15 A 394 ASP LEU GLN SER GLY ILE LEU HIS ALA ALA ASP GLU ARG SEQRES 16 A 394 ASP PHE LYS THR ALA PHE SER TYR PHE TYR GLU ALA PHE SEQRES 17 A 394 GLU GLY PHE ASP SER VAL ASP SER VAL LYS ALA LEU THR SEQRES 18 A 394 SER LEU LYS TYR MET LEU LEU CYS LYS ILE MET LEU GLY SEQRES 19 A 394 GLN SER ASP ASP VAL ASN GLN LEU VAL SER GLY LYS LEU SEQRES 20 A 394 ALA ILE THR TYR SER GLY ARG ASP ILE ASP ALA MET LYS SEQRES 21 A 394 SER VAL ALA GLU ALA SER HIS LYS ARG SER LEU ALA ASP SEQRES 22 A 394 PHE GLN ALA ALA LEU LYS GLU TYR LYS LYS GLU LEU ALA SEQRES 23 A 394 GLU ASP VAL ILE VAL GLN ALA HIS LEU GLY THR LEU TYR SEQRES 24 A 394 ASP THR MET LEU GLU GLN ASN LEU CYS ARG ILE ILE GLU SEQRES 25 A 394 PRO TYR SER ARG VAL GLN VAL ALA HIS VAL ALA GLU SER SEQRES 26 A 394 ILE GLN LEU PRO MET PRO GLN VAL GLU LYS LYS LEU SER SEQRES 27 A 394 GLN MET ILE LEU ASP LYS LYS PHE SER GLY ILE LEU ASP SEQRES 28 A 394 GLN GLY GLU GLY VAL LEU ILE VAL PHE GLU GLU THR PRO SEQRES 29 A 394 VAL ASP LYS THR TYR GLU ARG VAL LEU GLU THR ILE GLN SEQRES 30 A 394 SER MET GLY LYS VAL VAL ASP THR LEU TYR GLN LYS ALA SEQRES 31 A 394 LYS LYS LEU SER HET GD3 A 1 1 HET GD3 A 2 1 HET GD3 A 3 1 HET GD3 A 4 1 HET SO4 A 423 5 HET SO4 A 424 5 HETNAM GD3 GADOLINIUM ION HETNAM SO4 SULFATE ION FORMUL 2 GD3 4(GD 3+) FORMUL 6 SO4 2(O4 S 2-) HELIX 1 1 ASN A 38 ILE A 43 1 6 HELIX 2 2 ILE A 43 GLU A 60 1 18 HELIX 3 3 LYS A 62 SER A 78 1 17 HELIX 4 4 SER A 81 ASP A 98 1 18 HELIX 5 5 GLY A 102 GLN A 119 1 18 HELIX 6 6 ARG A 122 ALA A 141 1 20 HELIX 7 7 LEU A 142 LYS A 159 1 18 HELIX 8 8 LYS A 163 LEU A 180 1 18 HELIX 9 9 ASN A 182 ILE A 200 1 19 HELIX 10 10 PRO A 203 ASP A 221 1 19 HELIX 11 11 ASP A 224 ASP A 240 1 17 HELIX 12 12 ASP A 243 LEU A 261 1 19 HELIX 13 13 ASP A 265 GLY A 273 1 9 HELIX 14 14 GLY A 273 THR A 278 1 6 HELIX 15 15 GLY A 281 ARG A 297 1 17 HELIX 16 16 SER A 298 TYR A 309 1 12 HELIX 17 17 ASP A 316 GLU A 340 1 25 HELIX 18 18 VAL A 347 GLN A 355 1 9 HELIX 19 19 PRO A 357 ASP A 371 1 15 SHEET 1 A 3 ARG A 344 GLN A 346 0 SHEET 2 A 3 VAL A 384 VAL A 387 -1 O LEU A 385 N VAL A 345 SHEET 3 A 3 GLY A 376 ASP A 379 -1 N ILE A 377 O ILE A 386 LINK GD GD3 A 1 OD1 ASP A 265 1555 1555 3.41 LINK GD GD3 A 1 OD1 ASP A 266 1555 1555 2.42 LINK GD GD3 A 1 OD2 ASP A 266 1555 1555 2.47 LINK GD GD3 A 2 OE2 GLU A 234 1555 1555 2.54 LINK GD GD3 A 2 OE1 GLU A 234 1555 1555 2.91 LINK GD GD3 A 2 OE1 GLU A 237 1555 1555 3.29 LINK GD GD3 A 3 OE1 GLU A 382 1555 1555 2.82 LINK GD GD3 A 4 OE2 GLU A 308 1555 1555 2.54 LINK GD GD3 A 4 OE1 GLU A 308 1555 1555 3.25 SITE 1 AC1 2 ASP A 265 ASP A 266 SITE 1 AC2 2 GLU A 234 GLU A 237 SITE 1 AC3 1 GLU A 382 SITE 1 AC4 1 GLU A 308 SITE 1 AC5 2 SER A 81 LYS A 82 SITE 1 AC6 3 SER A 298 ALA A 300 ARG A 337 CRYST1 161.251 161.251 42.080 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006202 0.003580 0.000000 0.00000 SCALE2 0.000000 0.007161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023764 0.00000