HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-SEP-11 3TZ4 TITLE CRYSTAL STRUCTURE OF BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE TITLE 2 KINASE/S-ALPHA-CHLOROISOCAPROATE COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: [3-METHYL-2-OXOBUTANOATE DEHYDROGENASE [LIPOAMIDE]] KINASE, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE KINASE, BCKD- COMPND 6 KINASE, BCKDHKIN; COMPND 7 EC: 2.7.11.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: BCKDK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21GROESL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRCKHISB KEYWDS GHKL PROTEIN KINASE, ALLOSTERIC KINASE INHIBITOR, BRANCHED-CHAIN KEYWDS 2 ALPHA-KETOACID, BRANCHED-CHAIN AMINO ACIDS, MAPLE SYRUP URINE KEYWDS 3 DISEASE, DIABETES AND OBESITY, BERGERAT NUCLEOTIDE-BINDING FOLD, KEYWDS 4 PROTEIN KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.C.TSO,J.L.CHUANG,W.J.GUI,R.M.WYNN,J.LI,D.T.CHUANG REVDAT 4 28-FEB-24 3TZ4 1 SEQADV LINK REVDAT 3 18-SEP-19 3TZ4 1 JRNL REVDAT 2 29-MAY-13 3TZ4 1 JRNL REVDAT 1 03-OCT-12 3TZ4 0 JRNL AUTH S.C.TSO,X.QI,W.J.GUI,J.L.CHUANG,L.K.MORLOCK,A.L.WALLACE, JRNL AUTH 2 K.AHMED,S.LAXMAN,P.M.CAMPEAU,B.H.LEE,S.M.HUTSON,B.P.TU, JRNL AUTH 3 N.S.WILLIAMS,U.K.TAMBAR,R.M.WYNN,D.T.CHUANG JRNL TITL STRUCTURE-BASED DESIGN AND MECHANISMS OF ALLOSTERIC JRNL TITL 2 INHIBITORS FOR MITOCHONDRIAL BRANCHED-CHAIN ALPHA-KETOACID JRNL TITL 3 DEHYDROGENASE KINASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 9728 2013 JRNL REFN ESSN 1091-6490 JRNL PMID 23716694 JRNL DOI 10.1073/PNAS.1303220110 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1380 - 4.8910 0.98 2881 133 0.2159 0.2283 REMARK 3 2 4.8910 - 3.8828 1.00 2768 149 0.1740 0.1613 REMARK 3 3 3.8828 - 3.3922 1.00 2734 165 0.1891 0.1979 REMARK 3 4 3.3922 - 3.0821 1.00 2696 153 0.1962 0.2334 REMARK 3 5 3.0821 - 2.8613 1.00 2712 133 0.2107 0.2406 REMARK 3 6 2.8613 - 2.6926 1.00 2712 131 0.2039 0.2139 REMARK 3 7 2.6926 - 2.5578 1.00 2679 136 0.2041 0.2413 REMARK 3 8 2.5578 - 2.4464 1.00 2658 156 0.2178 0.2802 REMARK 3 9 2.4464 - 2.3523 1.00 2682 135 0.2166 0.2408 REMARK 3 10 2.3523 - 2.2711 1.00 2662 138 0.2381 0.2349 REMARK 3 11 2.2711 - 2.2001 0.99 2636 157 0.3012 0.3499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.17 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 60.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.620 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.48570 REMARK 3 B22 (A**2) : -5.48570 REMARK 3 B33 (A**2) : 10.97150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2608 REMARK 3 ANGLE : 1.106 3534 REMARK 3 CHIRALITY : 0.069 393 REMARK 3 PLANARITY : 0.004 449 REMARK 3 DIHEDRAL : 13.397 993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 3.0601 -30.3946 10.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.4217 REMARK 3 T33: 0.3849 T12: 0.0018 REMARK 3 T13: 0.0067 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 3.8094 L22: 2.0939 REMARK 3 L33: 0.8110 L12: 0.6673 REMARK 3 L13: -1.1991 L23: -0.4922 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: -0.4858 S13: -0.2936 REMARK 3 S21: 0.0027 S22: -0.0348 S23: 0.2237 REMARK 3 S31: 0.0527 S32: 0.0814 S33: 0.0770 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97864 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : 0.74500 REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.1_743 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG8000, 0.1 M TRIS, PH8.5, 1.2 M REMARK 280 NACL, 125MM KCL, 150MM ARG-HCL,20MM MGCL2, 5% GLYCEROL , PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.97650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.97650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.69950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.97650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.97650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.69950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.97650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.97650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.69950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.97650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.97650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.69950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHORS PROVIDED BURIED SURFACE AREA IS 924.3 A2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -29 REMARK 465 ILE A -28 REMARK 465 LEU A -27 REMARK 465 THR A -26 REMARK 465 SER A -25 REMARK 465 VAL A -24 REMARK 465 LEU A -23 REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 GLY A -20 REMARK 465 PRO A -19 REMARK 465 ARG A -18 REMARK 465 SER A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 LEU A -13 REMARK 465 TRP A -12 REMARK 465 PRO A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 LEU A -5 REMARK 465 SER A -4 REMARK 465 LEU A -3 REMARK 465 ARG A -2 REMARK 465 VAL A -1 REMARK 465 ARG A 0 REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 LYS A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 PHE A 23 REMARK 465 TYR A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 ILE A 29 REMARK 465 ASP A 30 REMARK 465 VAL A 31 REMARK 465 VAL A 32 REMARK 465 ALA A 33 REMARK 465 GLU A 34 REMARK 465 LYS A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 GLU A 307 REMARK 465 ALA A 308 REMARK 465 SER A 309 REMARK 465 THR A 310 REMARK 465 GLN A 311 REMARK 465 ASP A 312 REMARK 465 PRO A 313 REMARK 465 ARG A 314 REMARK 465 ILE A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 PHE A 319 REMARK 465 GLY A 320 REMARK 465 HIS A 321 REMARK 465 LEU A 322 REMARK 465 ASP A 323 REMARK 465 MET A 324 REMARK 465 HIS A 325 REMARK 465 SER A 326 REMARK 465 GLY A 327 REMARK 465 GLY A 328 REMARK 465 GLN A 329 REMARK 465 SER A 330 REMARK 465 GLY A 331 REMARK 465 PRO A 332 REMARK 465 MET A 333 REMARK 465 HIS A 334 REMARK 465 ARG A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 465 SER A 379 REMARK 465 PHE A 380 REMARK 465 ARG A 381 REMARK 465 ILE A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 286 45.07 -108.06 REMARK 500 HIS A 302 -21.15 79.00 REMARK 500 ILE A 362 -57.88 -122.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 391 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 249 OD1 REMARK 620 2 ADP A 389 O1A 91.1 REMARK 620 3 ADP A 389 O1B 93.3 82.3 REMARK 620 4 HOH A 430 O 177.8 89.6 84.8 REMARK 620 5 HOH A 431 O 85.6 87.9 170.1 96.5 REMARK 620 6 HOH A 443 O 82.6 169.9 90.2 96.4 99.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 392 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 298 O REMARK 620 2 ASP A 300 O 91.9 REMARK 620 3 PHE A 303 O 121.3 100.6 REMARK 620 4 GLY A 337 O 152.7 80.3 85.9 REMARK 620 5 ADP A 389 O2A 90.5 149.5 104.1 83.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TZ0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AND INHIBITOR WITH/WITHOUT ADP REMARK 900 RELATED ID: 3TZ2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT INHIBITOR REMARK 900 RELATED ID: 3TZ5 RELATED DB: PDB REMARK 900 RELATED ID: 4DZY RELATED DB: PDB REMARK 900 RELATED ID: 4H7Q RELATED DB: PDB REMARK 900 RELATED ID: 4H81 RELATED DB: PDB REMARK 900 RELATED ID: 4H85 RELATED DB: PDB DBREF 3TZ4 A -29 382 UNP Q00972 BCKD_RAT 1 412 SEQADV 3TZ4 HIS A 383 UNP Q00972 EXPRESSION TAG SEQADV 3TZ4 HIS A 384 UNP Q00972 EXPRESSION TAG SEQADV 3TZ4 HIS A 385 UNP Q00972 EXPRESSION TAG SEQADV 3TZ4 HIS A 386 UNP Q00972 EXPRESSION TAG SEQADV 3TZ4 HIS A 387 UNP Q00972 EXPRESSION TAG SEQADV 3TZ4 HIS A 388 UNP Q00972 EXPRESSION TAG SEQRES 1 A 418 MET ILE LEU THR SER VAL LEU GLY SER GLY PRO ARG SER SEQRES 2 A 418 GLY SER SER LEU TRP PRO LEU LEU GLY SER SER LEU SER SEQRES 3 A 418 LEU ARG VAL ARG SER THR SER ALA THR ASP THR HIS HIS SEQRES 4 A 418 VAL GLU LEU ALA ARG GLU ARG SER LYS THR VAL THR SER SEQRES 5 A 418 PHE TYR ASN GLN SER ALA ILE ASP VAL VAL ALA GLU LYS SEQRES 6 A 418 PRO SER VAL ARG LEU THR PRO THR MET MET LEU TYR SER SEQRES 7 A 418 GLY ARG SER GLN ASP GLY SER HIS LEU LEU LYS SER GLY SEQRES 8 A 418 ARG TYR LEU GLN GLN GLU LEU PRO VAL ARG ILE ALA HIS SEQRES 9 A 418 ARG ILE LYS GLY PHE ARG SER LEU PRO PHE ILE ILE GLY SEQRES 10 A 418 CYS ASN PRO THR ILE LEU HIS VAL HIS GLU LEU TYR ILE SEQRES 11 A 418 ARG ALA PHE GLN LYS LEU THR ASP PHE PRO PRO ILE LYS SEQRES 12 A 418 ASP GLN ALA ASP GLU ALA GLN TYR CYS GLN LEU VAL ARG SEQRES 13 A 418 GLN LEU LEU ASP ASP HIS LYS ASP VAL VAL THR LEU LEU SEQRES 14 A 418 ALA GLU GLY LEU ARG GLU SER ARG LYS HIS ILE GLU ASP SEQRES 15 A 418 GLU LYS LEU VAL ARG TYR PHE LEU ASP LYS THR LEU THR SEQRES 16 A 418 SER ARG LEU GLY ILE ARG MET LEU ALA THR HIS HIS LEU SEQRES 17 A 418 ALA LEU HIS GLU ASP LYS PRO ASP PHE VAL GLY ILE ILE SEQRES 18 A 418 CYS THR ARG LEU SER PRO LYS LYS ILE ILE GLU LYS TRP SEQRES 19 A 418 VAL ASP PHE ALA ARG ARG LEU CYS GLU HIS LYS TYR GLY SEQRES 20 A 418 ASN ALA PRO ARG VAL ARG ILE ASN GLY HIS VAL ALA ALA SEQRES 21 A 418 ARG PHE PRO PHE ILE PRO MET PRO LEU ASP TYR ILE LEU SEQRES 22 A 418 PRO GLU LEU LEU LYS ASN ALA MET ARG ALA THR MET GLU SEQRES 23 A 418 SER HIS LEU ASP THR PRO TYR ASN VAL PRO ASP VAL VAL SEQRES 24 A 418 ILE THR ILE ALA ASN ASN ASP VAL ASP LEU ILE ILE ARG SEQRES 25 A 418 ILE SER ASP ARG GLY GLY GLY ILE ALA HIS LYS ASP LEU SEQRES 26 A 418 ASP ARG VAL MET ASP TYR HIS PHE THR THR ALA GLU ALA SEQRES 27 A 418 SER THR GLN ASP PRO ARG ILE SER PRO LEU PHE GLY HIS SEQRES 28 A 418 LEU ASP MET HIS SER GLY GLY GLN SER GLY PRO MET HIS SEQRES 29 A 418 GLY PHE GLY PHE GLY LEU PRO THR SER ARG ALA TYR ALA SEQRES 30 A 418 GLU TYR LEU GLY GLY SER LEU GLN LEU GLN SER LEU GLN SEQRES 31 A 418 GLY ILE GLY THR ASP VAL TYR LEU ARG LEU ARG HIS ILE SEQRES 32 A 418 ASP GLY ARG GLU GLU SER PHE ARG ILE HIS HIS HIS HIS SEQRES 33 A 418 HIS HIS HET ADP A 389 27 HET 03H A 390 9 HET MG A 391 1 HET K A 392 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM 03H (2S)-2-CHLORO-4-METHYLPENTANOIC ACID HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETSYN 03H (S)-ALPHA-CHLOROISOCAPROATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 03H C6 H11 CL O2 FORMUL 4 MG MG 2+ FORMUL 5 K K 1+ FORMUL 6 HOH *80(H2 O) HELIX 1 1 GLY A 54 SER A 81 1 28 HELIX 2 2 PRO A 83 CYS A 88 1 6 HELIX 3 3 ASN A 89 PHE A 109 1 21 HELIX 4 4 ASP A 114 HIS A 132 1 19 HELIX 5 5 ASP A 134 ARG A 147 1 14 HELIX 6 6 LYS A 148 ILE A 150 5 3 HELIX 7 7 GLU A 153 HIS A 181 1 29 HELIX 8 8 SER A 196 GLY A 217 1 22 HELIX 9 9 ILE A 235 SER A 257 1 23 HELIX 10 10 PHE A 338 LEU A 350 1 13 SHEET 1 A 2 ARG A 39 THR A 41 0 SHEET 2 A 2 MET A 44 LEU A 46 -1 O LEU A 46 N ARG A 39 SHEET 1 B 3 PHE A 187 VAL A 188 0 SHEET 2 B 3 ILE A 191 LEU A 195 -1 O ILE A 191 N VAL A 188 SHEET 3 B 3 PHE A 232 PHE A 234 -1 O PHE A 234 N CYS A 192 SHEET 1 C 5 VAL A 222 GLY A 226 0 SHEET 2 C 5 VAL A 268 ASN A 274 1 O ILE A 270 N ARG A 223 SHEET 3 C 5 ASP A 278 ASP A 285 -1 O ILE A 280 N ALA A 273 SHEET 4 C 5 GLY A 363 ARG A 371 -1 O VAL A 366 N ILE A 283 SHEET 5 C 5 SER A 353 LEU A 359 -1 N LEU A 359 O GLY A 363 LINK OD1 ASN A 249 MG MG A 391 1555 1555 2.26 LINK O VAL A 298 K K A 392 1555 1555 2.91 LINK O ASP A 300 K K A 392 1555 1555 2.87 LINK O PHE A 303 K K A 392 1555 1555 2.92 LINK O GLY A 337 K K A 392 1555 1555 2.99 LINK O1A ADP A 389 MG MG A 391 1555 1555 2.12 LINK O1B ADP A 389 MG MG A 391 1555 1555 2.19 LINK O2A ADP A 389 K K A 392 1555 1555 2.88 LINK MG MG A 391 O HOH A 430 1555 1555 2.33 LINK MG MG A 391 O HOH A 431 1555 1555 2.22 LINK MG MG A 391 O HOH A 443 1555 1555 2.23 SITE 1 AC1 23 ASN A 249 ARG A 252 ALA A 253 ASP A 285 SITE 2 AC1 23 GLY A 289 ILE A 290 VAL A 298 THR A 304 SITE 3 AC1 23 THR A 305 GLY A 335 GLY A 337 GLY A 339 SITE 4 AC1 23 LEU A 340 PRO A 341 THR A 364 MG A 391 SITE 5 AC1 23 K A 392 HOH A 399 HOH A 406 HOH A 413 SITE 6 AC1 23 HOH A 430 HOH A 431 HOH A 451 SITE 1 AC2 6 ILE A 72 TYR A 99 HIS A 132 ARG A 167 SITE 2 AC2 6 ILE A 170 ARG A 171 SITE 1 AC3 5 ASN A 249 ADP A 389 HOH A 430 HOH A 431 SITE 2 AC3 5 HOH A 443 SITE 1 AC4 6 VAL A 298 ASP A 300 PHE A 303 GLY A 337 SITE 2 AC4 6 PRO A 341 ADP A 389 CRYST1 127.953 127.953 73.399 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013624 0.00000