HEADER TRANSFERASE/ANTIBIOTIC/INHIBITOR 27-SEP-11 3TZF TITLE CRYSTAL STRUCTURE OF THE YERSINIA PESTIS DIHYDROPTEROATE SYNTHASE WITH TITLE 2 SULFONAMIDE DRUG COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDROPTEROATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DHPS; COMPND 5 SYNONYM: DIHYDROPTEROATE SYNTHASE; COMPND 6 EC: 2.5.1.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 STRAIN: KIM D27; SOURCE 5 GENE: DHPS, FOLP, Y0683, YPO3501, YP_0582; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DIHYDROPTEROATE SYNTHASE, SULFONAMIDE COMPLEX, TIM BARREL, KEYWDS 2 TRANSFERASE-INHIBITOR-ANTIBIOTIC COMPLEX, TRANSFERASE-ANTIBIOTIC- KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WU REVDAT 2 28-FEB-24 3TZF 1 REMARK SEQADV HETSYN LINK REVDAT 1 14-MAR-12 3TZF 0 JRNL AUTH M.K.YUN,Y.WU,Z.LI,Y.ZHAO,M.B.WADDELL,A.M.FERREIRA,R.E.LEE, JRNL AUTH 2 D.BASHFORD,S.W.WHITE JRNL TITL CATALYSIS AND SULFA DRUG RESISTANCE IN DIHYDROPTEROATE JRNL TITL 2 SYNTHASE. JRNL REF SCIENCE V. 335 1110 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22383850 JRNL DOI 10.1126/SCIENCE.1214641 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 30629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2043 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4286 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5841 ; 1.156 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 4.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;38.119 ;24.420 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;14.070 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;10.587 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3257 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2762 ; 0.413 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4407 ; 0.770 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 1.064 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1428 ; 1.791 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7594 18.6616 40.0076 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0176 REMARK 3 T33: 0.0638 T12: 0.0048 REMARK 3 T13: 0.0063 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.0865 L22: 0.6488 REMARK 3 L33: 0.9279 L12: 0.0887 REMARK 3 L13: 0.3280 L23: 0.4078 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: -0.0979 S13: 0.0738 REMARK 3 S21: 0.0691 S22: -0.0290 S23: -0.0488 REMARK 3 S31: -0.0442 S32: -0.0585 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 276 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9770 -1.5964 7.2987 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.1270 REMARK 3 T33: 0.0306 T12: 0.0069 REMARK 3 T13: -0.0156 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.6747 L22: 0.7426 REMARK 3 L33: 2.1338 L12: 0.1264 REMARK 3 L13: 0.0930 L23: 0.4498 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: 0.2431 S13: -0.0605 REMARK 3 S21: -0.1000 S22: 0.0118 S23: -0.0218 REMARK 3 S31: 0.2035 S32: -0.0825 S33: -0.0874 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8001 14.5250 43.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.0115 T22: 0.1420 REMARK 3 T33: 0.0555 T12: 0.0103 REMARK 3 T13: 0.0236 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.9975 L22: 58.3658 REMARK 3 L33: 21.2201 L12: -15.2745 REMARK 3 L13: 9.2100 L23: -35.1918 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.1624 S13: -0.2458 REMARK 3 S21: 0.1622 S22: 0.6115 S23: 0.9429 REMARK 3 S31: -0.0985 S32: -0.3807 S33: -0.5702 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 278 B 280 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3395 -3.4941 8.2604 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: 0.1519 REMARK 3 T33: 0.0964 T12: 0.0426 REMARK 3 T13: -0.0116 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 0.8538 L22: 0.0301 REMARK 3 L33: 4.0363 L12: 0.1599 REMARK 3 L13: -1.8558 L23: -0.3471 REMARK 3 S TENSOR REMARK 3 S11: -0.1412 S12: 0.0369 S13: -0.0610 REMARK 3 S21: -0.0265 S22: 0.0144 S23: -0.0156 REMARK 3 S31: 0.3244 S32: -0.0597 S33: 0.1268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3TZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954 REMARK 200 MONOCHROMATOR : SI-220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20,000, MES(PH6.5), PH 6-7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.29100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 276 REMARK 465 GLY A 277 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 66 REMARK 465 ALA B 67 REMARK 465 GLY B 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LEU B 37 CG CD1 CD2 REMARK 470 VAL B 69 CG1 CG2 REMARK 470 SER B 70 OG REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LEU B 75 CG CD1 CD2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 VAL B 78 CG1 CG2 REMARK 470 VAL B 79 CG1 CG2 REMARK 470 VAL B 81 CG1 CG2 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 LEU B 85 CG CD1 CD2 REMARK 470 GLN B 87 CG CD OE1 NE2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 93 CG CD1 CD2 REMARK 470 VAL B 102 CG1 CG2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 SER B 106 OG REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 ASN B 147 CG OD1 ND2 REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 285 O HOH A 386 1.83 REMARK 500 O HOH A 295 O HOH A 357 2.13 REMARK 500 O HOH A 354 O HOH A 386 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 23 56.49 -115.61 REMARK 500 ASP A 30 37.19 -140.38 REMARK 500 SER A 151 74.05 28.13 REMARK 500 ARG A 220 14.36 58.99 REMARK 500 ASP B 30 27.12 -142.23 REMARK 500 ASN B 147 16.21 -146.23 REMARK 500 SER B 151 72.62 33.99 REMARK 500 ASN B 180 0.20 -69.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 279 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 22 OD1 REMARK 620 2 HH2 A 278 O1P 97.6 REMARK 620 3 HH2 A 278 O5P 101.3 77.3 REMARK 620 4 HOH A 317 O 81.0 167.1 90.4 REMARK 620 5 HOH A 352 O 93.4 101.0 165.3 91.9 REMARK 620 6 HOH A 353 O 169.3 93.1 80.3 88.5 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 279 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 22 OD1 REMARK 620 2 HH2 B 278 O4P 94.2 REMARK 620 3 HH2 B 278 O1P 95.3 84.2 REMARK 620 4 HOH B 298 O 171.5 87.3 93.1 REMARK 620 5 HOH B 299 O 94.6 171.1 95.8 83.8 REMARK 620 6 HOH B 306 O 88.7 94.6 175.8 82.8 84.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HH2 A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HH2 B 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 08D B 280 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TYU RELATED DB: PDB REMARK 900 RELATED ID: 3TYZ RELATED DB: PDB REMARK 900 RELATED ID: 3TZN RELATED DB: PDB DBREF 3TZF A 1 277 UNP Q7CKJ1 Q7CKJ1_YERPE 1 277 DBREF 3TZF B 1 277 UNP Q7CKJ1 Q7CKJ1_YERPE 1 277 SEQADV 3TZF GLY A -2 UNP Q7CKJ1 EXPRESSION TAG SEQADV 3TZF SER A -1 UNP Q7CKJ1 EXPRESSION TAG SEQADV 3TZF HIS A 0 UNP Q7CKJ1 EXPRESSION TAG SEQADV 3TZF GLY B -2 UNP Q7CKJ1 EXPRESSION TAG SEQADV 3TZF SER B -1 UNP Q7CKJ1 EXPRESSION TAG SEQADV 3TZF HIS B 0 UNP Q7CKJ1 EXPRESSION TAG SEQRES 1 A 280 GLY SER HIS MET HIS LEU THR ALA ARG GLY LEU THR LEU SEQRES 2 A 280 ASP LEU SER ARG PRO GLN VAL MET GLY ILE LEU ASN VAL SEQRES 3 A 280 THR PRO ASP SER PHE SER ASP GLY GLY CYS HIS ASN ASN SEQRES 4 A 280 LEU ASP GLN ALA LEU GLN HIS ALA GLN ARG MET LEU SER SEQRES 5 A 280 ALA GLY ALA THR LEU ILE ASP ILE GLY GLY GLU SER THR SEQRES 6 A 280 ARG PRO GLY ALA ALA GLU VAL SER GLU GLN GLU GLU LEU SEQRES 7 A 280 ASP ARG VAL VAL PRO VAL VAL GLU ALA LEU ALA GLN ARG SEQRES 8 A 280 PHE ASP VAL TRP LEU SER VAL ASP THR SER LYS ALA ALA SEQRES 9 A 280 VAL ILE THR GLU SER ALA HIS ALA GLY ALA HIS LEU ILE SEQRES 10 A 280 ASN ASP ILE ARG SER LEU GLN GLU PRO GLY ALA LEU GLU SEQRES 11 A 280 ALA ALA ALA LYS THR GLY LEU PRO VAL CYS LEU MET HIS SEQRES 12 A 280 MET GLN GLY GLN PRO LYS ASN MET GLN HIS SER PRO TYR SEQRES 13 A 280 TYR ASP ASP LEU MET THR ASP ILE ASN ARG PHE PHE GLN SEQRES 14 A 280 HIS HIS ILE GLU ARG CYS VAL ALA ALA GLY ILE ALA LYS SEQRES 15 A 280 ASN LYS LEU LEU LEU ASP PRO GLY PHE GLY PHE GLY LYS SEQRES 16 A 280 ASN LEU ALA HIS ASN TYR GLN LEU LEU ALA HIS LEU SER SEQRES 17 A 280 GLU LEU HIS HIS PHE GLU LEU PRO LEU LEU VAL GLY MET SEQRES 18 A 280 SER ARG LYS SER MET VAL GLY GLN LEU LEU ASN VAL PRO SEQRES 19 A 280 PRO GLN GLN ARG VAL ILE GLY SER VAL ALA CYS ALA VAL SEQRES 20 A 280 ILE ALA ALA MET GLN GLY ALA GLN ILE ILE ARG VAL HIS SEQRES 21 A 280 ASP VAL LYS GLU THR VAL GLU ALA MET CYS ILE VAL GLU SEQRES 22 A 280 ALA THR ARG SER ALA LYS GLY SEQRES 1 B 280 GLY SER HIS MET HIS LEU THR ALA ARG GLY LEU THR LEU SEQRES 2 B 280 ASP LEU SER ARG PRO GLN VAL MET GLY ILE LEU ASN VAL SEQRES 3 B 280 THR PRO ASP SER PHE SER ASP GLY GLY CYS HIS ASN ASN SEQRES 4 B 280 LEU ASP GLN ALA LEU GLN HIS ALA GLN ARG MET LEU SER SEQRES 5 B 280 ALA GLY ALA THR LEU ILE ASP ILE GLY GLY GLU SER THR SEQRES 6 B 280 ARG PRO GLY ALA ALA GLU VAL SER GLU GLN GLU GLU LEU SEQRES 7 B 280 ASP ARG VAL VAL PRO VAL VAL GLU ALA LEU ALA GLN ARG SEQRES 8 B 280 PHE ASP VAL TRP LEU SER VAL ASP THR SER LYS ALA ALA SEQRES 9 B 280 VAL ILE THR GLU SER ALA HIS ALA GLY ALA HIS LEU ILE SEQRES 10 B 280 ASN ASP ILE ARG SER LEU GLN GLU PRO GLY ALA LEU GLU SEQRES 11 B 280 ALA ALA ALA LYS THR GLY LEU PRO VAL CYS LEU MET HIS SEQRES 12 B 280 MET GLN GLY GLN PRO LYS ASN MET GLN HIS SER PRO TYR SEQRES 13 B 280 TYR ASP ASP LEU MET THR ASP ILE ASN ARG PHE PHE GLN SEQRES 14 B 280 HIS HIS ILE GLU ARG CYS VAL ALA ALA GLY ILE ALA LYS SEQRES 15 B 280 ASN LYS LEU LEU LEU ASP PRO GLY PHE GLY PHE GLY LYS SEQRES 16 B 280 ASN LEU ALA HIS ASN TYR GLN LEU LEU ALA HIS LEU SER SEQRES 17 B 280 GLU LEU HIS HIS PHE GLU LEU PRO LEU LEU VAL GLY MET SEQRES 18 B 280 SER ARG LYS SER MET VAL GLY GLN LEU LEU ASN VAL PRO SEQRES 19 B 280 PRO GLN GLN ARG VAL ILE GLY SER VAL ALA CYS ALA VAL SEQRES 20 B 280 ILE ALA ALA MET GLN GLY ALA GLN ILE ILE ARG VAL HIS SEQRES 21 B 280 ASP VAL LYS GLU THR VAL GLU ALA MET CYS ILE VAL GLU SEQRES 22 B 280 ALA THR ARG SER ALA LYS GLY HET HH2 A 278 22 HET MG A 279 1 HET HH2 B 278 22 HET MG B 279 1 HET 08D B 280 17 HETNAM HH2 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM 08D SULFAMETHOXAZOLE HETSYN HH2 [PTERIN-6-YL METHANYL]-PHOSPHONOPHOSPHATE HETSYN 08D 4-AMINO-N-(5-METHYL-1,2-OXAZOL-3-YL)BENZENESULFONAMIDE; HETSYN 2 08D SMX; SMZ FORMUL 3 HH2 2(C7 H9 N5 O8 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 08D C10 H11 N3 O3 S FORMUL 8 HOH *207(H2 O) HELIX 1 1 ASN A 36 ALA A 50 1 15 HELIX 2 2 SER A 70 PHE A 89 1 20 HELIX 3 3 LYS A 99 ALA A 109 1 11 HELIX 4 4 GLY A 124 GLY A 133 1 10 HELIX 5 5 ASP A 156 ALA A 175 1 20 HELIX 6 6 ALA A 178 ASN A 180 5 3 HELIX 7 7 ASN A 193 HIS A 203 1 11 HELIX 8 8 LEU A 204 GLU A 211 5 8 HELIX 9 9 LYS A 221 ASN A 229 1 9 HELIX 10 10 PRO A 231 GLN A 234 5 4 HELIX 11 11 ARG A 235 GLN A 249 1 15 HELIX 12 12 ASP A 258 SER A 274 1 17 HELIX 13 13 ASN B 36 GLY B 51 1 16 HELIX 14 14 SER B 70 GLN B 87 1 18 HELIX 15 15 LYS B 99 GLY B 110 1 12 HELIX 16 16 GLY B 124 GLY B 133 1 10 HELIX 17 17 ASP B 156 ALA B 175 1 20 HELIX 18 18 ALA B 178 ASN B 180 5 3 HELIX 19 19 ASN B 193 LEU B 204 1 12 HELIX 20 20 SER B 205 GLU B 211 5 7 HELIX 21 21 LYS B 221 ASN B 229 1 9 HELIX 22 22 PRO B 231 GLN B 234 5 4 HELIX 23 23 ARG B 235 GLN B 249 1 15 HELIX 24 24 ASP B 258 SER B 274 1 17 SHEET 1 A 2 HIS A 2 ALA A 5 0 SHEET 2 A 2 LEU A 8 ASP A 11 -1 O LEU A 8 N ALA A 5 SHEET 1 B 8 LEU A 182 ASP A 185 0 SHEET 2 B 8 VAL A 136 MET A 139 1 N LEU A 138 O LEU A 183 SHEET 3 B 8 LEU A 113 ASP A 116 1 N ILE A 114 O CYS A 137 SHEET 4 B 8 TRP A 92 ASP A 96 1 N VAL A 95 O ASN A 115 SHEET 5 B 8 LEU A 54 GLY A 58 1 N ILE A 57 O SER A 94 SHEET 6 B 8 GLN A 16 ASN A 22 1 N GLY A 19 O ASP A 56 SHEET 7 B 8 ILE A 253 VAL A 256 1 O ILE A 254 N MET A 18 SHEET 8 B 8 LEU A 215 VAL A 216 1 N VAL A 216 O ARG A 255 SHEET 1 C 2 HIS B 2 ALA B 5 0 SHEET 2 C 2 LEU B 8 ASP B 11 -1 O LEU B 10 N LEU B 3 SHEET 1 D 8 LEU B 182 ASP B 185 0 SHEET 2 D 8 VAL B 136 MET B 139 1 N LEU B 138 O LEU B 183 SHEET 3 D 8 LEU B 113 ASP B 116 1 N ILE B 114 O CYS B 137 SHEET 4 D 8 TRP B 92 ASP B 96 1 N VAL B 95 O ASN B 115 SHEET 5 D 8 LEU B 54 GLY B 58 1 N ILE B 57 O ASP B 96 SHEET 6 D 8 GLN B 16 ASN B 22 1 N GLY B 19 O ASP B 56 SHEET 7 D 8 ILE B 253 VAL B 256 1 O ILE B 254 N MET B 18 SHEET 8 D 8 LEU B 215 VAL B 216 1 N VAL B 216 O ARG B 255 LINK OD1 ASN A 22 MG MG A 279 1555 1555 2.04 LINK O1P HH2 A 278 MG MG A 279 1555 1555 2.14 LINK O5P HH2 A 278 MG MG A 279 1555 1555 2.20 LINK MG MG A 279 O HOH A 317 1555 1555 2.18 LINK MG MG A 279 O HOH A 352 1555 1555 1.99 LINK MG MG A 279 O HOH A 353 1555 1555 2.34 LINK OD1 ASN B 22 MG MG B 279 1555 1555 2.18 LINK O4P HH2 B 278 MG MG B 279 1555 1555 2.01 LINK O1P HH2 B 278 MG MG B 279 1555 1555 2.15 LINK MG MG B 279 O HOH B 298 1555 1555 2.03 LINK MG MG B 279 O HOH B 299 1555 1555 1.97 LINK MG MG B 279 O HOH B 306 1555 1555 2.34 SITE 1 AC1 19 ASN A 22 SER A 27 PHE A 28 SER A 61 SITE 2 AC1 19 THR A 62 ARG A 63 ASP A 96 ASN A 115 SITE 3 AC1 19 ILE A 117 ASP A 185 PHE A 190 GLY A 217 SITE 4 AC1 19 LYS A 221 ARG A 255 HIS A 257 MG A 279 SITE 5 AC1 19 HOH A 280 HOH A 353 HOH A 387 SITE 1 AC2 6 ASN A 22 SER A 27 HH2 A 278 HOH A 317 SITE 2 AC2 6 HOH A 352 HOH A 353 SITE 1 AC3 22 ASN B 22 SER B 27 PHE B 28 SER B 61 SITE 2 AC3 22 THR B 62 ARG B 63 ASP B 96 ASN B 115 SITE 3 AC3 22 ILE B 117 MET B 139 ASP B 185 PHE B 190 SITE 4 AC3 22 GLY B 217 LYS B 221 ARG B 255 HIS B 257 SITE 5 AC3 22 MG B 279 08D B 280 HOH B 283 HOH B 298 SITE 6 AC3 22 HOH B 299 HOH B 301 SITE 1 AC4 5 ASN B 22 HH2 B 278 HOH B 298 HOH B 299 SITE 2 AC4 5 HOH B 306 SITE 1 AC5 11 PHE B 28 THR B 62 ARG B 63 PRO B 64 SITE 2 AC5 11 GLY B 189 PHE B 190 LYS B 221 SER B 222 SITE 3 AC5 11 HH2 B 278 HOH B 289 HOH B 333 CRYST1 70.245 50.582 74.988 90.00 90.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014236 0.000000 0.000199 0.00000 SCALE2 0.000000 0.019770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013337 0.00000