HEADER LIGASE 27-SEP-11 3TZL TITLE CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE FROM CAMPYLOBACTER TITLE 2 JEJUNI COMPLEXED WITH ADP AND TRYPTOPHANE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHANYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRYPTOPHAN--TRNA LIGASE, TRPRS; COMPND 5 EC: 6.1.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI; SOURCE 3 ORGANISM_TAXID: 192222; SOURCE 4 STRAIN: NCTC 11168; SOURCE 5 GENE: CJ0388, TRPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ALPHA-BETA STRUCTURE, CYTOSOL, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.ZHOU,S.GRIMSHAW,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 1 05-OCT-11 3TZL 0 JRNL AUTH Y.KIM,M.ZHOU,S.GRIMSHAW,W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE FROM JRNL TITL 2 CAMPYLOBACTER JEJUNI COMPLEXED WITH ADP AND TRYPTOPHANE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_851) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 36301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7965 - 5.0559 0.99 2746 168 0.1601 0.1705 REMARK 3 2 5.0559 - 4.0165 0.99 2722 144 0.1345 0.1706 REMARK 3 3 4.0165 - 3.5098 0.99 2688 141 0.1574 0.1937 REMARK 3 4 3.5098 - 3.1893 1.00 2704 132 0.1909 0.2412 REMARK 3 5 3.1893 - 2.9610 1.00 2701 142 0.2104 0.2569 REMARK 3 6 2.9610 - 2.7866 0.99 2688 123 0.2180 0.2674 REMARK 3 7 2.7866 - 2.6471 0.99 2673 160 0.2188 0.2867 REMARK 3 8 2.6471 - 2.5319 1.00 2648 144 0.2178 0.3050 REMARK 3 9 2.5319 - 2.4345 0.99 2685 144 0.2137 0.2641 REMARK 3 10 2.4345 - 2.3506 0.99 2695 126 0.2177 0.2917 REMARK 3 11 2.3506 - 2.2771 1.00 2662 154 0.2202 0.2643 REMARK 3 12 2.2771 - 2.2120 1.00 2693 119 0.2233 0.2772 REMARK 3 13 2.2120 - 2.1538 0.82 2186 113 0.2399 0.2829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 38.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.48830 REMARK 3 B22 (A**2) : -5.24240 REMARK 3 B33 (A**2) : 8.73070 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -1.32160 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5309 REMARK 3 ANGLE : 1.189 7159 REMARK 3 CHIRALITY : 0.069 777 REMARK 3 PLANARITY : 0.004 903 REMARK 3 DIHEDRAL : 15.417 1991 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 1:28) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0871 25.0526 32.2200 REMARK 3 T TENSOR REMARK 3 T11: 0.3268 T22: 0.3505 REMARK 3 T33: 0.4330 T12: -0.0073 REMARK 3 T13: 0.0760 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 4.2119 L22: 0.7245 REMARK 3 L33: 2.4452 L12: 0.0086 REMARK 3 L13: 2.3986 L23: 0.6642 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: 0.4234 S13: 0.6242 REMARK 3 S21: 0.0053 S22: 0.0749 S23: -0.1726 REMARK 3 S31: -0.2781 S32: 0.2302 S33: 0.0967 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 29:82) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3058 22.3839 36.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2175 REMARK 3 T33: 0.2818 T12: -0.0150 REMARK 3 T13: 0.0186 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.0375 L22: 1.7642 REMARK 3 L33: 1.6855 L12: 0.2179 REMARK 3 L13: 0.7002 L23: 0.5550 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.0285 S13: 0.4789 REMARK 3 S21: -0.0104 S22: 0.0393 S23: -0.0200 REMARK 3 S31: -0.1453 S32: 0.0773 S33: 0.1072 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 83:143) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1855 10.1739 22.8310 REMARK 3 T TENSOR REMARK 3 T11: 0.2707 T22: 0.3018 REMARK 3 T33: 0.2772 T12: 0.0019 REMARK 3 T13: 0.0408 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 2.7983 L22: 2.0498 REMARK 3 L33: 1.3640 L12: 0.7960 REMARK 3 L13: 0.1702 L23: 0.2873 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.1619 S13: -0.2536 REMARK 3 S21: -0.0920 S22: 0.0422 S23: -0.2435 REMARK 3 S31: -0.0156 S32: 0.3482 S33: -0.0219 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 144:179) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9835 17.8933 15.4408 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.4473 REMARK 3 T33: 0.3777 T12: -0.0220 REMARK 3 T13: 0.1033 T23: 0.1016 REMARK 3 L TENSOR REMARK 3 L11: 4.8415 L22: 1.6295 REMARK 3 L33: 2.5909 L12: 0.3895 REMARK 3 L13: 1.4534 L23: 0.4707 REMARK 3 S TENSOR REMARK 3 S11: -0.1294 S12: 0.7024 S13: 0.3602 REMARK 3 S21: -0.2767 S22: 0.0732 S23: -0.2622 REMARK 3 S31: -0.2892 S32: 0.5277 S33: 0.0794 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 180:287) REMARK 3 ORIGIN FOR THE GROUP (A): 60.0653 24.1285 43.9972 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.3616 REMARK 3 T33: 0.4274 T12: -0.0366 REMARK 3 T13: -0.0286 T23: -0.0923 REMARK 3 L TENSOR REMARK 3 L11: 4.2393 L22: 1.5705 REMARK 3 L33: 1.3993 L12: 0.0518 REMARK 3 L13: 0.5913 L23: 0.2080 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.1977 S13: 0.4412 REMARK 3 S21: -0.0651 S22: 0.1520 S23: -0.2763 REMARK 3 S31: -0.1335 S32: 0.2878 S33: -0.0418 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resseq 288:331) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4887 23.9955 29.2372 REMARK 3 T TENSOR REMARK 3 T11: 0.2980 T22: 0.2732 REMARK 3 T33: 0.3882 T12: 0.0265 REMARK 3 T13: 0.0038 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 2.7039 L22: 1.1647 REMARK 3 L33: 1.7655 L12: 0.9731 REMARK 3 L13: 1.5517 L23: 0.7827 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: -0.2178 S13: 0.4171 REMARK 3 S21: -0.0862 S22: -0.1987 S23: 0.1215 REMARK 3 S31: -0.1197 S32: -0.0390 S33: 0.3170 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'B' and (resseq 0:143) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2106 0.3754 23.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.3013 T22: 0.2361 REMARK 3 T33: 0.2501 T12: -0.0109 REMARK 3 T13: 0.0169 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.7708 L22: 0.5151 REMARK 3 L33: 1.1148 L12: 0.0668 REMARK 3 L13: 1.3219 L23: -0.0594 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0334 S13: -0.1452 REMARK 3 S21: -0.0932 S22: -0.0952 S23: 0.0727 REMARK 3 S31: 0.1408 S32: -0.1594 S33: -0.0076 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'B' and (resseq 144:189) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8504 -9.6250 28.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.4504 T22: 0.2412 REMARK 3 T33: 0.5018 T12: -0.0174 REMARK 3 T13: 0.0035 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.3768 L22: 0.5734 REMARK 3 L33: 2.2567 L12: 0.9167 REMARK 3 L13: 1.4271 L23: 1.1208 REMARK 3 S TENSOR REMARK 3 S11: 0.3307 S12: -0.1609 S13: -0.8596 REMARK 3 S21: 0.1310 S22: -0.2254 S23: -0.0456 REMARK 3 S31: 0.7346 S32: -0.0748 S33: -0.3209 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'B' and (resseq 190:331) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7450 -4.5499 13.5783 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.3367 REMARK 3 T33: 0.2718 T12: -0.0484 REMARK 3 T13: 0.0485 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.4921 L22: 0.9537 REMARK 3 L33: 2.4465 L12: 1.2265 REMARK 3 L13: 1.9168 L23: 0.9739 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0435 S13: -0.2394 REMARK 3 S21: -0.1118 S22: 0.0691 S23: -0.0342 REMARK 3 S31: 0.1824 S32: -0.2899 S33: 0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-11. REMARK 100 THE RCSB ID CODE IS RCSB068118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51300 REMARK 200 FOR SHELL : 3.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 1.344 M POTASSIUM PHOSPHATE DIBASIC, PH 8.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.31450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 21 -49.94 -158.01 REMARK 500 GLU A 166 87.58 -69.05 REMARK 500 ALA B 21 -47.16 -142.98 REMARK 500 LYS B 144 -39.76 -36.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TYR B 124 25.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 333 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 193 OG REMARK 620 2 ADP B 330 O3B 147.3 REMARK 620 3 ADP B 330 O2B 143.7 57.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 333 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M5W RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO-FORM REMARK 900 RELATED ID: IDP90555 RELATED DB: TARGETDB DBREF 3TZL A 1 319 UNP Q9PIB4 SYW_CAMJE 1 319 DBREF 3TZL B 1 319 UNP Q9PIB4 SYW_CAMJE 1 319 SEQADV 3TZL SER A -2 UNP Q9PIB4 EXPRESSION TAG SEQADV 3TZL ASN A -1 UNP Q9PIB4 EXPRESSION TAG SEQADV 3TZL ALA A 0 UNP Q9PIB4 EXPRESSION TAG SEQADV 3TZL SER B -2 UNP Q9PIB4 EXPRESSION TAG SEQADV 3TZL ASN B -1 UNP Q9PIB4 EXPRESSION TAG SEQADV 3TZL ALA B 0 UNP Q9PIB4 EXPRESSION TAG SEQRES 1 A 322 SER ASN ALA MSE ARG VAL LEU THR GLY LEU GLN PRO SER SEQRES 2 A 322 GLY ASP LEU HIS ILE GLY ASN TYR PHE GLY ALA ILE LYS SEQRES 3 A 322 GLN MSE VAL ASP ALA GLN GLU LYS SER GLN MSE PHE MSE SEQRES 4 A 322 PHE ILE ALA ASN TYR HIS ALA MSE THR SER SER GLN ASP SEQRES 5 A 322 GLY GLU LYS LEU LYS GLN ASN SER LEU LYS ALA ALA ALA SEQRES 6 A 322 ALA PHE LEU SER LEU GLY ILE ASP PRO GLN LYS SER VAL SEQRES 7 A 322 PHE TRP LEU GLN SER ASP VAL LYS GLU VAL MSE GLU LEU SEQRES 8 A 322 TYR TRP ILE LEU SER GLN PHE THR PRO MSE GLY LEU LEU SEQRES 9 A 322 GLU ARG ALA HIS SER TYR LYS ASP LYS VAL ALA LYS GLY SEQRES 10 A 322 LEU SER ALA SER HIS GLY LEU PHE SER TYR PRO VAL LEU SEQRES 11 A 322 MSE ALA ALA ASP ILE LEU LEU PHE ASP THR ARG ILE VAL SEQRES 12 A 322 PRO VAL GLY LYS ASP GLN ILE GLN HIS VAL GLU ILE ALA SEQRES 13 A 322 ARG ASP ILE ALA LEU LYS VAL ASN ASN GLU TRP GLY GLU SEQRES 14 A 322 ILE PHE THR LEU PRO GLU ALA ARG VAL ASN GLU GLU VAL SEQRES 15 A 322 ALA VAL VAL VAL GLY THR ASP GLY ALA LYS MSE SER LYS SEQRES 16 A 322 SER TYR GLN ASN THR ILE ASP ILE PHE SER SER GLU LYS SEQRES 17 A 322 THR LEU LYS LYS GLN ILE SER SER ILE VAL THR ASP SER SEQRES 18 A 322 THR ALA LEU GLU ASP PRO LYS ASP HIS GLU ASN CYS ASN SEQRES 19 A 322 ILE PHE LYS ILE ALA LYS LEU PHE LEU ASP GLU SER GLY SEQRES 20 A 322 GLN LYS GLU LEU GLN ILE ARG TYR GLU LYS GLY GLY GLU SEQRES 21 A 322 GLY TYR GLY HIS PHE LYS ILE TYR LEU ASN GLU LEU VAL SEQRES 22 A 322 ASN ALA TYR PHE LYS GLU ALA ARG GLU LYS TYR ASN GLU SEQRES 23 A 322 LEU LEU GLU LYS PRO SER HIS LEU LYS GLU ILE LEU ASP SEQRES 24 A 322 PHE GLY ALA THR LYS ALA ARG LYS ILE ALA GLN GLU LYS SEQRES 25 A 322 MSE GLN LYS ILE TYR GLU LYS ILE GLY LEU SEQRES 1 B 322 SER ASN ALA MSE ARG VAL LEU THR GLY LEU GLN PRO SER SEQRES 2 B 322 GLY ASP LEU HIS ILE GLY ASN TYR PHE GLY ALA ILE LYS SEQRES 3 B 322 GLN MSE VAL ASP ALA GLN GLU LYS SER GLN MSE PHE MSE SEQRES 4 B 322 PHE ILE ALA ASN TYR HIS ALA MSE THR SER SER GLN ASP SEQRES 5 B 322 GLY GLU LYS LEU LYS GLN ASN SER LEU LYS ALA ALA ALA SEQRES 6 B 322 ALA PHE LEU SER LEU GLY ILE ASP PRO GLN LYS SER VAL SEQRES 7 B 322 PHE TRP LEU GLN SER ASP VAL LYS GLU VAL MSE GLU LEU SEQRES 8 B 322 TYR TRP ILE LEU SER GLN PHE THR PRO MSE GLY LEU LEU SEQRES 9 B 322 GLU ARG ALA HIS SER TYR LYS ASP LYS VAL ALA LYS GLY SEQRES 10 B 322 LEU SER ALA SER HIS GLY LEU PHE SER TYR PRO VAL LEU SEQRES 11 B 322 MSE ALA ALA ASP ILE LEU LEU PHE ASP THR ARG ILE VAL SEQRES 12 B 322 PRO VAL GLY LYS ASP GLN ILE GLN HIS VAL GLU ILE ALA SEQRES 13 B 322 ARG ASP ILE ALA LEU LYS VAL ASN ASN GLU TRP GLY GLU SEQRES 14 B 322 ILE PHE THR LEU PRO GLU ALA ARG VAL ASN GLU GLU VAL SEQRES 15 B 322 ALA VAL VAL VAL GLY THR ASP GLY ALA LYS MSE SER LYS SEQRES 16 B 322 SER TYR GLN ASN THR ILE ASP ILE PHE SER SER GLU LYS SEQRES 17 B 322 THR LEU LYS LYS GLN ILE SER SER ILE VAL THR ASP SER SEQRES 18 B 322 THR ALA LEU GLU ASP PRO LYS ASP HIS GLU ASN CYS ASN SEQRES 19 B 322 ILE PHE LYS ILE ALA LYS LEU PHE LEU ASP GLU SER GLY SEQRES 20 B 322 GLN LYS GLU LEU GLN ILE ARG TYR GLU LYS GLY GLY GLU SEQRES 21 B 322 GLY TYR GLY HIS PHE LYS ILE TYR LEU ASN GLU LEU VAL SEQRES 22 B 322 ASN ALA TYR PHE LYS GLU ALA ARG GLU LYS TYR ASN GLU SEQRES 23 B 322 LEU LEU GLU LYS PRO SER HIS LEU LYS GLU ILE LEU ASP SEQRES 24 B 322 PHE GLY ALA THR LYS ALA ARG LYS ILE ALA GLN GLU LYS SEQRES 25 B 322 MSE GLN LYS ILE TYR GLU LYS ILE GLY LEU MODRES 3TZL MSE A 1 MET SELENOMETHIONINE MODRES 3TZL MSE A 25 MET SELENOMETHIONINE MODRES 3TZL MSE A 34 MET SELENOMETHIONINE MODRES 3TZL MSE A 36 MET SELENOMETHIONINE MODRES 3TZL MSE A 44 MET SELENOMETHIONINE MODRES 3TZL MSE A 86 MET SELENOMETHIONINE MODRES 3TZL MSE A 98 MET SELENOMETHIONINE MODRES 3TZL MSE A 128 MET SELENOMETHIONINE MODRES 3TZL MSE A 190 MET SELENOMETHIONINE MODRES 3TZL MSE A 310 MET SELENOMETHIONINE MODRES 3TZL MSE B 1 MET SELENOMETHIONINE MODRES 3TZL MSE B 25 MET SELENOMETHIONINE MODRES 3TZL MSE B 34 MET SELENOMETHIONINE MODRES 3TZL MSE B 36 MET SELENOMETHIONINE MODRES 3TZL MSE B 44 MET SELENOMETHIONINE MODRES 3TZL MSE B 86 MET SELENOMETHIONINE MODRES 3TZL MSE B 98 MET SELENOMETHIONINE MODRES 3TZL MSE B 128 MET SELENOMETHIONINE MODRES 3TZL MSE B 190 MET SELENOMETHIONINE MODRES 3TZL MSE B 310 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 25 8 HET MSE A 34 8 HET MSE A 36 8 HET MSE A 44 8 HET MSE A 86 8 HET MSE A 98 8 HET MSE A 128 8 HET MSE A 190 8 HET MSE A 310 8 HET MSE B 1 8 HET MSE B 25 8 HET MSE B 34 8 HET MSE B 36 8 HET MSE B 44 8 HET MSE B 86 8 HET MSE B 98 8 HET MSE B 128 8 HET MSE B 190 8 HET MSE B 310 8 HET ADP A 330 27 HET TRP A 331 15 HET PO4 A 332 5 HET PO4 A 333 5 HET PO4 A 335 5 HET NA A 336 1 HET ADP B 330 27 HET TRP B 331 15 HET PO4 B 332 5 HET NA B 333 1 HETNAM MSE SELENOMETHIONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM TRP TRYPTOPHAN HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 TRP 2(C11 H12 N2 O2) FORMUL 5 PO4 4(O4 P 3-) FORMUL 8 NA 2(NA 1+) FORMUL 13 HOH *218(H2 O) HELIX 1 1 HIS A 14 ALA A 21 1 8 HELIX 2 2 ALA A 21 ALA A 28 1 8 HELIX 3 3 ALA A 39 MSE A 44 1 6 HELIX 4 4 ASP A 49 LEU A 67 1 19 HELIX 5 5 SER A 80 VAL A 82 5 3 HELIX 6 6 LYS A 83 SER A 93 1 11 HELIX 7 7 GLN A 94 THR A 96 5 3 HELIX 8 8 PRO A 97 ARG A 103 1 7 HELIX 9 9 ALA A 104 LYS A 113 1 10 HELIX 10 10 SER A 118 PHE A 135 1 18 HELIX 11 11 GLY A 143 ASP A 145 5 3 HELIX 12 12 GLN A 146 GLY A 165 1 20 HELIX 13 13 SER A 191 GLN A 195 5 5 HELIX 14 14 SER A 203 SER A 213 1 11 HELIX 15 15 ASP A 226 ASN A 229 5 4 HELIX 16 16 CYS A 230 LYS A 237 1 8 HELIX 17 17 LEU A 238 LEU A 240 5 3 HELIX 18 18 ASP A 241 GLY A 255 1 15 HELIX 19 19 GLY A 258 PHE A 274 1 17 HELIX 20 20 PHE A 274 LYS A 287 1 14 HELIX 21 21 LYS A 287 GLY A 318 1 32 HELIX 22 22 HIS B 14 ALA B 21 1 8 HELIX 23 23 ALA B 21 ALA B 28 1 8 HELIX 24 24 ALA B 39 MSE B 44 1 6 HELIX 25 25 ASP B 49 GLY B 68 1 20 HELIX 26 26 SER B 80 VAL B 82 5 3 HELIX 27 27 LYS B 83 GLN B 94 1 12 HELIX 28 28 PRO B 97 ARG B 103 1 7 HELIX 29 29 ALA B 104 LYS B 113 1 10 HELIX 30 30 SER B 118 PHE B 135 1 18 HELIX 31 31 GLY B 143 ASP B 145 5 3 HELIX 32 32 GLN B 146 GLY B 165 1 20 HELIX 33 33 SER B 203 SER B 213 1 11 HELIX 34 34 CYS B 230 LYS B 237 1 8 HELIX 35 35 LEU B 238 LEU B 240 5 3 HELIX 36 36 ASP B 241 GLY B 255 1 15 HELIX 37 37 GLY B 258 PHE B 274 1 17 HELIX 38 38 PHE B 274 LYS B 287 1 14 HELIX 39 39 LYS B 287 GLY B 318 1 32 SHEET 1 A 3 LEU A 4 LEU A 7 0 SHEET 2 A 3 PHE A 35 ILE A 38 1 O PHE A 37 N LEU A 7 SHEET 3 A 3 VAL A 75 LEU A 78 1 O VAL A 75 N MSE A 36 SHEET 1 B 2 ILE A 139 PRO A 141 0 SHEET 2 B 2 GLU A 172 ARG A 174 1 O GLU A 172 N VAL A 140 SHEET 1 C 3 ARG B 2 LEU B 7 0 SHEET 2 C 3 GLN B 33 ILE B 38 1 O PHE B 37 N LEU B 7 SHEET 3 C 3 VAL B 75 LEU B 78 1 O VAL B 75 N MSE B 36 SHEET 1 D 2 ILE B 139 PRO B 141 0 SHEET 2 D 2 GLU B 172 ARG B 174 1 O GLU B 172 N VAL B 140 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C GLN A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N VAL A 26 1555 1555 1.32 LINK C GLN A 33 N MSE A 34 1555 1555 1.32 LINK C MSE A 34 N PHE A 35 1555 1555 1.33 LINK C PHE A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N PHE A 37 1555 1555 1.33 LINK C ALA A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N THR A 45 1555 1555 1.33 LINK C VAL A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N GLU A 87 1555 1555 1.32 LINK C PRO A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N GLY A 99 1555 1555 1.33 LINK C LEU A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N ALA A 129 1555 1555 1.33 LINK C LYS A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N SER A 191 1555 1555 1.33 LINK C LYS A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N GLN A 311 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C GLN B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N VAL B 26 1555 1555 1.33 LINK C GLN B 33 N MSE B 34 1555 1555 1.34 LINK C MSE B 34 N PHE B 35 1555 1555 1.34 LINK C PHE B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N PHE B 37 1555 1555 1.33 LINK C ALA B 43 N MSE B 44 1555 1555 1.34 LINK C MSE B 44 N THR B 45 1555 1555 1.34 LINK C VAL B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N GLU B 87 1555 1555 1.32 LINK C PRO B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N GLY B 99 1555 1555 1.34 LINK C LEU B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N ALA B 129 1555 1555 1.33 LINK C LYS B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N SER B 191 1555 1555 1.33 LINK C LYS B 309 N MSE B 310 1555 1555 1.33 LINK C MSE B 310 N GLN B 311 1555 1555 1.33 LINK OG SER B 193 NA NA B 333 1555 1555 2.27 LINK O3B ADP A 330 NA NA A 336 1555 1555 2.30 LINK O3B ADP B 330 NA NA B 333 1555 1555 2.33 LINK O2B ADP B 330 NA NA B 333 1555 1555 2.85 CISPEP 1 GLU B 177 GLU B 178 0 -18.83 SITE 1 AC1 13 GLN A 8 HIS A 14 GLY A 16 ASN A 17 SITE 2 AC1 13 GLY A 20 ALA A 21 VAL A 182 LYS A 189 SITE 3 AC1 13 MSE A 190 SER A 191 LYS A 192 NA A 336 SITE 4 AC1 13 HOH A 444 SITE 1 AC2 9 GLY A 6 GLN A 8 PHE A 37 HIS A 42 SITE 2 AC2 9 TYR A 124 MSE A 128 ASP A 131 VAL A 140 SITE 3 AC2 9 GLN A 146 SITE 1 AC3 5 LEU A 221 GLY A 258 TYR A 259 GLY A 260 SITE 2 AC3 5 HIS A 261 SITE 1 AC4 2 SER A 203 GLU A 204 SITE 1 AC5 3 ARG A 103 GLN A 148 LYS B 275 SITE 1 AC6 2 SER A 193 ADP A 330 SITE 1 AC7 10 HIS B 14 GLY B 16 ASN B 17 GLY B 20 SITE 2 AC7 10 VAL B 182 LYS B 189 MSE B 190 SER B 191 SITE 3 AC7 10 LYS B 192 NA B 333 SITE 1 AC8 8 GLY B 6 PHE B 37 HIS B 42 MSE B 128 SITE 2 AC8 8 ASP B 131 VAL B 140 GLN B 146 HOH B 392 SITE 1 AC9 3 GLY B 11 LYS B 52 ASN B 56 SITE 1 BC1 2 SER B 193 ADP B 330 CRYST1 66.777 50.629 105.915 90.00 107.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014975 0.000000 0.004580 0.00000 SCALE2 0.000000 0.019752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009873 0.00000 HETATM 1 N MSE A 1 34.834 32.653 16.879 1.00 76.55 N ANISOU 1 N MSE A 1 8905 10292 9889 -586 227 3736 N HETATM 2 CA MSE A 1 35.322 31.298 17.145 1.00 69.85 C ANISOU 2 CA MSE A 1 7986 9729 8824 -509 437 3435 C HETATM 3 C MSE A 1 35.150 30.909 18.610 1.00 59.41 C ANISOU 3 C MSE A 1 6772 8119 7682 -366 460 3071 C HETATM 4 O MSE A 1 36.014 31.188 19.439 1.00 56.49 O ANISOU 4 O MSE A 1 6417 7592 7455 -442 449 3026 O HETATM 5 CB MSE A 1 36.795 31.172 16.765 1.00 69.54 C ANISOU 5 CB MSE A 1 7798 9997 8629 -705 525 3574 C HETATM 6 CG MSE A 1 37.108 31.622 15.363 1.00 74.28 C ANISOU 6 CG MSE A 1 8275 10900 9048 -848 473 3823 C HETATM 7 SE MSE A 1 38.552 30.556 14.641 0.60 89.57 SE ANISOU 7 SE MSE A 1 9977 13435 10621 -906 641 3660 SE HETATM 8 CE MSE A 1 39.736 30.556 16.169 1.00 59.99 C ANISOU 8 CE MSE A 1 6267 9444 7081 -976 689 3526 C