HEADER TRANSPORT PROTEIN 27-SEP-11 3TZU TITLE CRYSTAL STRUCTURE OF A GLYCINE CLEAVAGE SYSTEM H PROTEIN (GCVH) FROM TITLE 2 MYCOBACTERIUM MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE CLEAVAGE SYSTEM H PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GCVH; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: GCVH_1, GCVH1, MMAR_0209; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 3TZU 1 REMARK SEQADV REVDAT 2 22-APR-15 3TZU 1 JRNL REVDAT 1 05-OCT-11 3TZU 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1465 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.402 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3719 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2273 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5111 ; 1.455 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5642 ; 0.910 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 6.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;34.053 ;26.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;13.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.562 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4265 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 643 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7021 19.9854 -19.9425 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.1792 REMARK 3 T33: 0.1698 T12: 0.1358 REMARK 3 T13: 0.0222 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 3.3177 L22: 1.1968 REMARK 3 L33: 3.6809 L12: 0.4338 REMARK 3 L13: -0.9831 L23: -0.5545 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.1717 S13: 0.2113 REMARK 3 S21: 0.1592 S22: 0.0912 S23: 0.0333 REMARK 3 S31: -0.4742 S32: -0.3949 S33: -0.0806 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6629 9.0413 -49.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1726 REMARK 3 T33: 0.1376 T12: -0.1312 REMARK 3 T13: -0.0135 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 3.4754 L22: 1.5589 REMARK 3 L33: 3.4802 L12: -0.0743 REMARK 3 L13: 0.7472 L23: -0.6987 REMARK 3 S TENSOR REMARK 3 S11: -0.1025 S12: 0.2191 S13: -0.1951 REMARK 3 S21: -0.1642 S22: 0.1743 S23: 0.0265 REMARK 3 S31: 0.4657 S32: -0.3920 S33: -0.0718 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 132 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0422 4.0885 -23.0925 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.2072 REMARK 3 T33: 0.1086 T12: 0.1183 REMARK 3 T13: 0.0261 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.8164 L22: 0.9991 REMARK 3 L33: 4.0002 L12: 0.1304 REMARK 3 L13: 1.5297 L23: 0.1183 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.1195 S13: -0.1550 REMARK 3 S21: -0.0208 S22: 0.0638 S23: 0.0275 REMARK 3 S31: 0.3981 S32: 0.5535 S33: 0.0084 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 132 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0597 24.9032 -45.8177 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.2051 REMARK 3 T33: 0.1170 T12: -0.1162 REMARK 3 T13: -0.0254 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.5762 L22: 0.8941 REMARK 3 L33: 4.3093 L12: -0.0178 REMARK 3 L13: -1.9830 L23: 0.2518 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: -0.1160 S13: 0.1438 REMARK 3 S21: -0.0120 S22: 0.0611 S23: 0.0448 REMARK 3 S31: -0.3802 S32: 0.5341 S33: 0.0227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3TZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CUT SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20740 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.272 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.151 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.27 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3IFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 219005, JCSG REMARK 280 SCREEN D04: 0.1 M ACETATE, PH 4.5, 200 MM LITHIUM SULFATE, 30% W/ REMARK 280 V PEG8000, MYMAA.01046.B.A1 PS00874 16.35 MG/ML, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290.0K, PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 SER A 133 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ARG B 4 REMARK 465 LYS B 5 REMARK 465 SER B 133 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 ARG C 4 REMARK 465 LYS C 5 REMARK 465 SER C 133 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 ARG D 4 REMARK 465 LYS D 5 REMARK 465 SER D 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 ASP B 29 CG OD1 OD2 REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 ILE C 6 CG1 CG2 CD1 REMARK 470 ASP C 29 CG OD1 OD2 REMARK 470 GLU C 54 CG CD OE1 OE2 REMARK 470 GLU C 63 CG CD OE1 OE2 REMARK 470 ILE D 6 CG1 CG2 CD1 REMARK 470 ASP D 29 CG OD1 OD2 REMARK 470 GLU D 54 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 16 36.46 70.85 REMARK 500 ASP A 29 38.87 -81.50 REMARK 500 ASP A 102 65.23 -162.88 REMARK 500 HIS B 16 37.98 71.23 REMARK 500 ASP B 102 64.90 -152.25 REMARK 500 ASP C 102 65.53 -164.43 REMARK 500 HIS D 16 39.33 71.71 REMARK 500 THR D 27 118.14 -39.32 REMARK 500 ASP D 29 47.93 -96.96 REMARK 500 ASP D 102 66.02 -157.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG C 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 138 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MXU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLYCINE CLEAVAGE SYSTEM PROTEIN H FROM REMARK 900 BARTONELLA HENSELAE REMARK 900 RELATED ID: 3HGB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLYCINE CLEAVAGE SYSTEM PROTEIN H FROM REMARK 900 MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: 3IFT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLYCINE CLEAVAGE SYSTEM PROTEIN H FROM REMARK 900 MYCOBACTERIUM TUBERCULOSIS, USING X-RAYS FROM THE COMPACT LIGHT REMARK 900 SOURCE. REMARK 900 RELATED ID: MYMAA.01046.B RELATED DB: TARGETDB DBREF 3TZU A 1 133 UNP B2HKH2 B2HKH2_MYCMM 1 133 DBREF 3TZU B 1 133 UNP B2HKH2 B2HKH2_MYCMM 1 133 DBREF 3TZU C 1 133 UNP B2HKH2 B2HKH2_MYCMM 1 133 DBREF 3TZU D 1 133 UNP B2HKH2 B2HKH2_MYCMM 1 133 SEQADV 3TZU GLY A -3 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU PRO A -2 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU GLY A -1 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU SER A 0 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU GLY B -3 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU PRO B -2 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU GLY B -1 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU SER B 0 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU GLY C -3 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU PRO C -2 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU GLY C -1 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU SER C 0 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU GLY D -3 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU PRO D -2 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU GLY D -1 UNP B2HKH2 EXPRESSION TAG SEQADV 3TZU SER D 0 UNP B2HKH2 EXPRESSION TAG SEQRES 1 A 137 GLY PRO GLY SER MET THR ASP ARG LYS ILE PRO GLY ASP SEQRES 2 A 137 ARG SER TYR THR ALA ASP HIS GLU TRP ILE ASP ILE ALA SEQRES 3 A 137 PRO GLY ALA ALA THR PRO ASP GLY PRO VAL ARG VAL GLY SEQRES 4 A 137 ILE THR SER VAL ALA VAL GLU ALA LEU GLY ASP LEU VAL SEQRES 5 A 137 PHE VAL GLN LEU PRO GLU VAL GLY GLU THR VAL SER ALA SEQRES 6 A 137 GLY GLU SER CYS GLY GLU VAL GLU SER THR LYS THR VAL SEQRES 7 A 137 SER ASP LEU ILE ALA PRO ALA SER GLY GLN ILE VAL GLU SEQRES 8 A 137 VAL ASN THR ALA ALA VAL ASP ASP PRO ALA THR ILE ALA SEQRES 9 A 137 THR ASP PRO TYR GLY ALA GLY TRP LEU TYR SER VAL GLN SEQRES 10 A 137 PRO THR ALA VAL GLY GLU LEU LEU THR ALA SER GLU TYR SEQRES 11 A 137 ALA GLY GLN ASN GLY LEU SER SEQRES 1 B 137 GLY PRO GLY SER MET THR ASP ARG LYS ILE PRO GLY ASP SEQRES 2 B 137 ARG SER TYR THR ALA ASP HIS GLU TRP ILE ASP ILE ALA SEQRES 3 B 137 PRO GLY ALA ALA THR PRO ASP GLY PRO VAL ARG VAL GLY SEQRES 4 B 137 ILE THR SER VAL ALA VAL GLU ALA LEU GLY ASP LEU VAL SEQRES 5 B 137 PHE VAL GLN LEU PRO GLU VAL GLY GLU THR VAL SER ALA SEQRES 6 B 137 GLY GLU SER CYS GLY GLU VAL GLU SER THR LYS THR VAL SEQRES 7 B 137 SER ASP LEU ILE ALA PRO ALA SER GLY GLN ILE VAL GLU SEQRES 8 B 137 VAL ASN THR ALA ALA VAL ASP ASP PRO ALA THR ILE ALA SEQRES 9 B 137 THR ASP PRO TYR GLY ALA GLY TRP LEU TYR SER VAL GLN SEQRES 10 B 137 PRO THR ALA VAL GLY GLU LEU LEU THR ALA SER GLU TYR SEQRES 11 B 137 ALA GLY GLN ASN GLY LEU SER SEQRES 1 C 137 GLY PRO GLY SER MET THR ASP ARG LYS ILE PRO GLY ASP SEQRES 2 C 137 ARG SER TYR THR ALA ASP HIS GLU TRP ILE ASP ILE ALA SEQRES 3 C 137 PRO GLY ALA ALA THR PRO ASP GLY PRO VAL ARG VAL GLY SEQRES 4 C 137 ILE THR SER VAL ALA VAL GLU ALA LEU GLY ASP LEU VAL SEQRES 5 C 137 PHE VAL GLN LEU PRO GLU VAL GLY GLU THR VAL SER ALA SEQRES 6 C 137 GLY GLU SER CYS GLY GLU VAL GLU SER THR LYS THR VAL SEQRES 7 C 137 SER ASP LEU ILE ALA PRO ALA SER GLY GLN ILE VAL GLU SEQRES 8 C 137 VAL ASN THR ALA ALA VAL ASP ASP PRO ALA THR ILE ALA SEQRES 9 C 137 THR ASP PRO TYR GLY ALA GLY TRP LEU TYR SER VAL GLN SEQRES 10 C 137 PRO THR ALA VAL GLY GLU LEU LEU THR ALA SER GLU TYR SEQRES 11 C 137 ALA GLY GLN ASN GLY LEU SER SEQRES 1 D 137 GLY PRO GLY SER MET THR ASP ARG LYS ILE PRO GLY ASP SEQRES 2 D 137 ARG SER TYR THR ALA ASP HIS GLU TRP ILE ASP ILE ALA SEQRES 3 D 137 PRO GLY ALA ALA THR PRO ASP GLY PRO VAL ARG VAL GLY SEQRES 4 D 137 ILE THR SER VAL ALA VAL GLU ALA LEU GLY ASP LEU VAL SEQRES 5 D 137 PHE VAL GLN LEU PRO GLU VAL GLY GLU THR VAL SER ALA SEQRES 6 D 137 GLY GLU SER CYS GLY GLU VAL GLU SER THR LYS THR VAL SEQRES 7 D 137 SER ASP LEU ILE ALA PRO ALA SER GLY GLN ILE VAL GLU SEQRES 8 D 137 VAL ASN THR ALA ALA VAL ASP ASP PRO ALA THR ILE ALA SEQRES 9 D 137 THR ASP PRO TYR GLY ALA GLY TRP LEU TYR SER VAL GLN SEQRES 10 D 137 PRO THR ALA VAL GLY GLU LEU LEU THR ALA SER GLU TYR SEQRES 11 D 137 ALA GLY GLN ASN GLY LEU SER HET ACT A 134 4 HET EDO A 135 4 HET EDO A 136 4 HET EDO A 137 4 HET PEG A 138 7 HET ACT B 134 4 HET EDO B 135 4 HET EDO B 136 4 HET EDO C 134 4 HET PEG C 135 7 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 6 EDO 6(C2 H6 O2) FORMUL 9 PEG 2(C4 H10 O3) FORMUL 15 HOH *166(H2 O) HELIX 1 1 THR A 37 GLY A 45 1 9 HELIX 2 2 ASN A 89 ASP A 95 1 7 HELIX 3 3 PRO A 96 ASP A 102 1 7 HELIX 4 4 THR A 122 ASN A 130 1 9 HELIX 5 5 THR B 37 GLY B 45 1 9 HELIX 6 6 ASN B 89 ASP B 95 1 7 HELIX 7 7 PRO B 96 ASP B 102 1 7 HELIX 8 8 THR B 122 ASN B 130 1 9 HELIX 9 9 THR C 37 GLY C 45 1 9 HELIX 10 10 ASN C 89 ASP C 95 1 7 HELIX 11 11 PRO C 96 ASP C 102 1 7 HELIX 12 12 THR C 122 ASN C 130 1 9 HELIX 13 13 THR D 37 GLY D 45 1 9 HELIX 14 14 ASN D 89 ASP D 95 1 7 HELIX 15 15 PRO D 96 ASP D 102 1 7 HELIX 16 16 THR D 122 ASN D 130 1 9 SHEET 1 A 6 SER A 11 TYR A 12 0 SHEET 2 A 6 GLU A 17 ILE A 19 -1 O ILE A 19 N SER A 11 SHEET 3 A 6 VAL A 32 ILE A 36 -1 O GLY A 35 N TRP A 18 SHEET 4 A 6 TYR A 110 VAL A 117 -1 O VAL A 112 N VAL A 32 SHEET 5 A 6 ALA A 81 VAL A 88 -1 N GLU A 87 O SER A 111 SHEET 6 A 6 THR A 58 VAL A 59 -1 N VAL A 59 O GLY A 83 SHEET 1 B 6 LEU A 47 GLN A 51 0 SHEET 2 B 6 SER A 64 SER A 70 -1 O GLU A 69 N VAL A 48 SHEET 3 B 6 THR A 73 ILE A 78 -1 O THR A 73 N SER A 70 SHEET 4 B 6 THR C 73 ILE C 78 -1 O VAL C 74 N VAL A 74 SHEET 5 B 6 SER C 64 SER C 70 -1 N SER C 70 O THR C 73 SHEET 6 B 6 LEU C 47 GLN C 51 -1 N VAL C 48 O GLU C 69 SHEET 1 C 6 SER B 11 TYR B 12 0 SHEET 2 C 6 GLU B 17 ILE B 19 -1 O ILE B 19 N SER B 11 SHEET 3 C 6 VAL B 32 ILE B 36 -1 O GLY B 35 N TRP B 18 SHEET 4 C 6 TYR B 110 VAL B 117 -1 O VAL B 112 N VAL B 32 SHEET 5 C 6 ALA B 81 VAL B 88 -1 N SER B 82 O ALA B 116 SHEET 6 C 6 THR B 58 VAL B 59 -1 N VAL B 59 O GLY B 83 SHEET 1 D 6 LEU B 47 GLN B 51 0 SHEET 2 D 6 SER B 64 SER B 70 -1 O GLU B 69 N VAL B 48 SHEET 3 D 6 THR B 73 ILE B 78 -1 O THR B 73 N SER B 70 SHEET 4 D 6 THR D 73 ILE D 78 -1 O VAL D 74 N VAL B 74 SHEET 5 D 6 SER D 64 SER D 70 -1 N CYS D 65 O LEU D 77 SHEET 6 D 6 LEU D 47 GLN D 51 -1 N GLN D 51 O GLU D 67 SHEET 1 E 6 SER C 11 TYR C 12 0 SHEET 2 E 6 GLU C 17 ILE C 19 -1 O ILE C 19 N SER C 11 SHEET 3 E 6 VAL C 32 ILE C 36 -1 O GLY C 35 N TRP C 18 SHEET 4 E 6 TYR C 110 VAL C 117 -1 O VAL C 112 N VAL C 32 SHEET 5 E 6 ALA C 81 VAL C 88 -1 N GLU C 87 O SER C 111 SHEET 6 E 6 THR C 58 VAL C 59 -1 N VAL C 59 O GLY C 83 SHEET 1 F 6 SER D 11 TYR D 12 0 SHEET 2 F 6 GLU D 17 ILE D 19 -1 O ILE D 19 N SER D 11 SHEET 3 F 6 VAL D 32 ILE D 36 -1 O GLY D 35 N TRP D 18 SHEET 4 F 6 TYR D 110 VAL D 117 -1 O TYR D 110 N VAL D 34 SHEET 5 F 6 ALA D 81 VAL D 88 -1 N GLU D 87 O SER D 111 SHEET 6 F 6 THR D 58 VAL D 59 -1 N VAL D 59 O GLY D 83 SITE 1 AC1 7 SER B 60 SER B 82 HOH B 175 SER D 60 SITE 2 AC1 7 SER D 82 HOH D 138 HOH D 152 SITE 1 AC2 6 SER A 60 SER A 82 HOH A 151 SER C 60 SITE 2 AC2 6 SER C 82 HOH C 156 SITE 1 AC3 7 ALA A 43 LYS A 72 THR A 73 EDO A 137 SITE 2 AC3 7 HOH A 162 ASP C 15 SER C 75 SITE 1 AC4 8 ASP A 15 GLU A 17 VAL A 68 SER A 75 SITE 2 AC4 8 ASP A 76 LEU A 77 ILE A 78 EDO A 137 SITE 1 AC5 6 ASP B 15 GLU B 17 SER B 75 ASP B 76 SITE 2 AC5 6 HOH B 178 HOH D 167 SITE 1 AC6 5 SER A 75 EDO A 135 EDO A 136 HOH A 177 SITE 2 AC6 5 ALA C 43 SITE 1 AC7 5 ALA B 43 LYS B 72 THR B 73 HOH B 155 SITE 2 AC7 5 SER D 75 SITE 1 AC8 3 SER C 11 ALA C 22 GLY C 24 SITE 1 AC9 7 LYS A 72 HOH A 145 LYS B 72 VAL B 74 SITE 2 AC9 7 HOH B 146 ASP C 76 ASP D 76 SITE 1 BC1 8 GLU A 67 ASP A 76 ASP B 76 HOH B 158 SITE 2 BC1 8 LYS C 72 LYS D 72 VAL D 74 HOH D 169 CRYST1 50.310 50.310 165.320 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019877 0.011476 0.000000 0.00000 SCALE2 0.000000 0.022952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006049 0.00000