HEADER ANTIMICROBIAL PROTEIN 28-SEP-11 3U03 OBSLTE 11-SEP-19 3U03 6O5D TITLE THE STRUCTURE OF HUMAN SIDEROCALIN BOUND TO THE BACTERIAL SIDEROPHORE TITLE 2 PYOCHELIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: NGAL, 25 KDA ALPHA-2-MICROGLOBULIN-RELATED SUBUNIT OF MMP-9, COMPND 5 LIPOCALIN-2, ONCOGENE 24P3, P25; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCN2, HNL, NGAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 + RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3 KEYWDS SIDEROPHORE, SSGCID SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 2 DISEASE, BETA-BARREL, SIDEROCALIN, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-SEP-19 3U03 1 OBSLTE REVDAT 1 16-NOV-11 3U03 0 JRNL AUTH M.C.CLIFTON,T.E.EDWARDS, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, JRNL AUTH 3 R.K.STRONG JRNL TITL THE STRUCTURE OF HUMAN SIDEROCALIN BOUND TO THE BACTERIAL JRNL TITL 2 SIDEROPHORE PYOCHELIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 27565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2900 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.292 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.886 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2896 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1970 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3938 ; 1.518 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4806 ; 0.861 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 347 ; 6.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;35.010 ;24.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;15.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3192 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 596 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6077 76.6685 54.7770 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.1634 REMARK 3 T33: 0.0239 T12: 0.0743 REMARK 3 T13: 0.0455 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 3.0012 L22: 5.5264 REMARK 3 L33: 2.0572 L12: -0.6263 REMARK 3 L13: 0.1086 L23: 0.6534 REMARK 3 S TENSOR REMARK 3 S11: 0.1340 S12: 0.1543 S13: 0.0072 REMARK 3 S21: -0.0981 S22: -0.1370 S23: -0.0734 REMARK 3 S31: -0.1055 S32: -0.0964 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1787 67.4263 65.4441 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1061 REMARK 3 T33: 0.1340 T12: 0.0459 REMARK 3 T13: 0.0394 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 4.3496 L22: 2.7144 REMARK 3 L33: 3.9464 L12: -0.0230 REMARK 3 L13: 1.9620 L23: 0.5506 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.2723 S13: 0.1723 REMARK 3 S21: 0.2646 S22: -0.1005 S23: 0.1979 REMARK 3 S31: 0.0676 S32: -0.3744 S33: 0.1140 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7903 74.5916 58.2639 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.1129 REMARK 3 T33: 0.0696 T12: 0.0616 REMARK 3 T13: 0.0246 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.7319 L22: 3.1000 REMARK 3 L33: 2.2030 L12: -0.7746 REMARK 3 L13: 0.0674 L23: 0.8509 REMARK 3 S TENSOR REMARK 3 S11: 0.1164 S12: 0.1788 S13: -0.0369 REMARK 3 S21: 0.0218 S22: -0.1865 S23: 0.1962 REMARK 3 S31: -0.1004 S32: -0.2980 S33: 0.0701 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5183 78.9246 52.4459 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.1618 REMARK 3 T33: 0.1557 T12: 0.0524 REMARK 3 T13: 0.0758 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 1.9142 L22: 2.3381 REMARK 3 L33: 1.3348 L12: -0.6848 REMARK 3 L13: -0.4905 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: 0.3302 S13: 0.3310 REMARK 3 S21: -0.2779 S22: -0.2983 S23: -0.4465 REMARK 3 S31: -0.1167 S32: 0.0650 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 43 REMARK 3 ORIGIN FOR THE GROUP (A): 49.1021 50.1912 44.4611 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0223 REMARK 3 T33: 0.0382 T12: -0.0240 REMARK 3 T13: 0.0203 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.8338 L22: 2.1691 REMARK 3 L33: 2.5349 L12: -1.3823 REMARK 3 L13: 0.0288 L23: 0.0522 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.0774 S13: 0.0086 REMARK 3 S21: -0.0677 S22: 0.0155 S23: -0.0690 REMARK 3 S31: 0.0830 S32: 0.0212 S33: 0.0671 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 44 C 62 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9302 43.6267 38.8011 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0622 REMARK 3 T33: 0.1421 T12: -0.0423 REMARK 3 T13: -0.0279 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 5.1079 L22: 2.0398 REMARK 3 L33: 15.9439 L12: 0.5629 REMARK 3 L13: -6.2883 L23: 0.0976 REMARK 3 S TENSOR REMARK 3 S11: -0.3201 S12: -0.0115 S13: -0.4698 REMARK 3 S21: -0.1894 S22: 0.0679 S23: -0.0091 REMARK 3 S31: 0.5003 S32: 0.2806 S33: 0.2521 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 63 C 81 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3470 37.4236 38.5126 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.2134 REMARK 3 T33: 0.2372 T12: -0.0715 REMARK 3 T13: -0.0138 T23: -0.0797 REMARK 3 L TENSOR REMARK 3 L11: 0.3034 L22: 5.7759 REMARK 3 L33: 16.6440 L12: -1.0076 REMARK 3 L13: -2.1847 L23: 7.4981 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: -0.0564 S13: -0.0204 REMARK 3 S21: 0.2552 S22: 0.4252 S23: -0.2124 REMARK 3 S31: 1.0633 S32: 0.4561 S33: -0.2942 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 82 C 177 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7648 48.0409 42.8021 REMARK 3 T TENSOR REMARK 3 T11: 0.0598 T22: 0.0734 REMARK 3 T33: 0.0456 T12: -0.0243 REMARK 3 T13: 0.0113 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.6473 L22: 1.1750 REMARK 3 L33: 1.7405 L12: -0.3711 REMARK 3 L13: 0.0305 L23: -0.6100 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.1133 S13: -0.0377 REMARK 3 S21: -0.1011 S22: -0.0172 S23: -0.0268 REMARK 3 S31: 0.0849 S32: -0.0073 S33: 0.0014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1L6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOSAA.18070.A AT 10 MG/ML. 1.3M REMARK 280 AMMONIUM SULFATE, 0.2M LITHIUM SULFATE, 50MM SODIUM CHLORIDE, REMARK 280 0.1M SODIUM ACETATE, PH 4.5. CRYOPROTECTION 15% GLYCEROL., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.61900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.40150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.40150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.80950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.40150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.40150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.42850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.40150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.40150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.80950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.40150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.40150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.42850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.61900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 PRO A -18 REMARK 465 LEU A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 LEU A -14 REMARK 465 TRP A -13 REMARK 465 LEU A -12 REMARK 465 GLY A -11 REMARK 465 LEU A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 LEU A -4 REMARK 465 HIS A -3 REMARK 465 ALA A -2 REMARK 465 GLN A -1 REMARK 465 ALA A 0 REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 MET C -19 REMARK 465 PRO C -18 REMARK 465 LEU C -17 REMARK 465 GLY C -16 REMARK 465 LEU C -15 REMARK 465 LEU C -14 REMARK 465 TRP C -13 REMARK 465 LEU C -12 REMARK 465 GLY C -11 REMARK 465 LEU C -10 REMARK 465 ALA C -9 REMARK 465 LEU C -8 REMARK 465 LEU C -7 REMARK 465 GLY C -6 REMARK 465 ALA C -5 REMARK 465 LEU C -4 REMARK 465 HIS C -3 REMARK 465 ALA C -2 REMARK 465 GLN C -1 REMARK 465 ALA C 0 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 GLY C 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 ASP C 47 CB CG OD1 OD2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 TRP C 79 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 79 CZ3 CH2 REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 GLU C 150 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -34.23 67.78 REMARK 500 GLN A 117 -43.92 -139.66 REMARK 500 ASN A 129 11.60 58.15 REMARK 500 CYS A 175 -39.35 75.43 REMARK 500 TYR C 115 -32.67 67.54 REMARK 500 GLN C 117 -49.42 -134.94 REMARK 500 ASN C 129 14.33 55.07 REMARK 500 CYS C 175 -35.68 73.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE C 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 488 A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 488 C 180 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HOSAA.18070.A RELATED DB: TARGETDB DBREF 3U03 A -19 178 UNP P80188 NGAL_HUMAN 1 198 DBREF 3U03 C -19 178 UNP P80188 NGAL_HUMAN 1 198 SEQADV 3U03 SER A 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 3U03 SER C 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQRES 1 A 198 MET PRO LEU GLY LEU LEU TRP LEU GLY LEU ALA LEU LEU SEQRES 2 A 198 GLY ALA LEU HIS ALA GLN ALA GLN ASP SER THR SER ASP SEQRES 3 A 198 LEU ILE PRO ALA PRO PRO LEU SER LYS VAL PRO LEU GLN SEQRES 4 A 198 GLN ASN PHE GLN ASP ASN GLN PHE GLN GLY LYS TRP TYR SEQRES 5 A 198 VAL VAL GLY LEU ALA GLY ASN ALA ILE LEU ARG GLU ASP SEQRES 6 A 198 LYS ASP PRO GLN LYS MET TYR ALA THR ILE TYR GLU LEU SEQRES 7 A 198 LYS GLU ASP LYS SER TYR ASN VAL THR SER VAL LEU PHE SEQRES 8 A 198 ARG LYS LYS LYS CYS ASP TYR TRP ILE ARG THR PHE VAL SEQRES 9 A 198 PRO GLY SER GLN PRO GLY GLU PHE THR LEU GLY ASN ILE SEQRES 10 A 198 LYS SER TYR PRO GLY LEU THR SER TYR LEU VAL ARG VAL SEQRES 11 A 198 VAL SER THR ASN TYR ASN GLN HIS ALA MET VAL PHE PHE SEQRES 12 A 198 LYS LYS VAL SER GLN ASN ARG GLU TYR PHE LYS ILE THR SEQRES 13 A 198 LEU TYR GLY ARG THR LYS GLU LEU THR SER GLU LEU LYS SEQRES 14 A 198 GLU ASN PHE ILE ARG PHE SER LYS SER LEU GLY LEU PRO SEQRES 15 A 198 GLU ASN HIS ILE VAL PHE PRO VAL PRO ILE ASP GLN CYS SEQRES 16 A 198 ILE ASP GLY SEQRES 1 C 198 MET PRO LEU GLY LEU LEU TRP LEU GLY LEU ALA LEU LEU SEQRES 2 C 198 GLY ALA LEU HIS ALA GLN ALA GLN ASP SER THR SER ASP SEQRES 3 C 198 LEU ILE PRO ALA PRO PRO LEU SER LYS VAL PRO LEU GLN SEQRES 4 C 198 GLN ASN PHE GLN ASP ASN GLN PHE GLN GLY LYS TRP TYR SEQRES 5 C 198 VAL VAL GLY LEU ALA GLY ASN ALA ILE LEU ARG GLU ASP SEQRES 6 C 198 LYS ASP PRO GLN LYS MET TYR ALA THR ILE TYR GLU LEU SEQRES 7 C 198 LYS GLU ASP LYS SER TYR ASN VAL THR SER VAL LEU PHE SEQRES 8 C 198 ARG LYS LYS LYS CYS ASP TYR TRP ILE ARG THR PHE VAL SEQRES 9 C 198 PRO GLY SER GLN PRO GLY GLU PHE THR LEU GLY ASN ILE SEQRES 10 C 198 LYS SER TYR PRO GLY LEU THR SER TYR LEU VAL ARG VAL SEQRES 11 C 198 VAL SER THR ASN TYR ASN GLN HIS ALA MET VAL PHE PHE SEQRES 12 C 198 LYS LYS VAL SER GLN ASN ARG GLU TYR PHE LYS ILE THR SEQRES 13 C 198 LEU TYR GLY ARG THR LYS GLU LEU THR SER GLU LEU LYS SEQRES 14 C 198 GLU ASN PHE ILE ARG PHE SER LYS SER LEU GLY LEU PRO SEQRES 15 C 198 GLU ASN HIS ILE VAL PHE PRO VAL PRO ILE ASP GLN CYS SEQRES 16 C 198 ILE ASP GLY HET FE A 179 1 HET 488 A 180 21 HET FE C 179 1 HET 488 C 180 21 HETNAM FE FE (III) ION HETNAM 488 (2R,4R)-2-[(4R)-2-(2-HYDROXYPHENYL)-4,5-DIHYDRO-1,3- HETNAM 2 488 THIAZOL-4-YL]-3-METHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC HETNAM 3 488 ACID HETSYN 488 PYOCHELIN FORMUL 3 FE 2(FE 3+) FORMUL 4 488 2(C14 H16 N2 O3 S2) FORMUL 7 HOH *114(H2 O) HELIX 1 1 PRO A 12 VAL A 16 5 5 HELIX 2 2 ASN A 96 TYR A 100 5 5 HELIX 3 3 THR A 145 LEU A 159 1 15 HELIX 4 4 PRO A 162 ASN A 164 5 3 HELIX 5 5 PRO C 12 VAL C 16 5 5 HELIX 6 6 GLN C 23 GLN C 28 1 6 HELIX 7 7 ASN C 96 TYR C 100 5 5 HELIX 8 8 THR C 145 LEU C 159 1 15 HELIX 9 9 PRO C 162 ASN C 164 5 3 SHEET 1 A10 ILE A 166 VAL A 167 0 SHEET 2 A10 GLY A 29 GLY A 38 -1 N LEU A 36 O VAL A 167 SHEET 3 A10 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 A10 HIS A 118 SER A 127 -1 N ALA A 119 O TYR A 138 SHEET 5 A10 LEU A 103 THR A 113 -1 N LEU A 107 O LYS A 124 SHEET 6 A10 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 A10 LYS A 75 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 A10 TYR A 64 ARG A 72 -1 N VAL A 66 O ARG A 81 SHEET 9 A10 ALA A 53 LEU A 58 -1 N GLU A 57 O ASN A 65 SHEET 10 A10 GLY A 29 GLY A 38 -1 N TRP A 31 O THR A 54 SHEET 1 B10 ILE C 166 VAL C 167 0 SHEET 2 B10 GLY C 29 GLY C 38 -1 N LEU C 36 O VAL C 167 SHEET 3 B10 ARG C 130 GLY C 139 -1 O GLY C 139 N TYR C 32 SHEET 4 B10 HIS C 118 SER C 127 -1 N ALA C 119 O TYR C 138 SHEET 5 B10 LEU C 103 THR C 113 -1 N LEU C 107 O LYS C 124 SHEET 6 B10 GLU C 91 LEU C 94 -1 N PHE C 92 O VAL C 108 SHEET 7 B10 LYS C 75 PRO C 85 -1 N VAL C 84 O THR C 93 SHEET 8 B10 TYR C 64 ARG C 72 -1 N VAL C 66 O ARG C 81 SHEET 9 B10 ALA C 53 LEU C 58 -1 N ILE C 55 O THR C 67 SHEET 10 B10 GLY C 29 GLY C 38 -1 N GLY C 29 O TYR C 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.04 SSBOND 2 CYS C 76 CYS C 175 1555 1555 2.06 LINK FE FE A 179 O1 488 A 180 1555 1555 1.85 LINK FE FE C 179 O1 488 C 180 1555 1555 2.47 SITE 1 AC1 2 TYR A 106 488 A 180 SITE 1 AC2 3 TYR C 106 LYS C 125 488 C 180 SITE 1 AC3 7 ALA A 40 TYR A 106 PHE A 123 LYS A 125 SITE 2 AC3 7 TYR A 132 LYS A 134 HOH A 181 SITE 1 AC4 6 ALA C 40 PHE C 123 LYS C 125 TYR C 132 SITE 2 AC4 6 PHE C 133 LYS C 134 CRYST1 114.803 114.803 119.238 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008387 0.00000