data_3U05 # _entry.id 3U05 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3U05 pdb_00003u05 10.2210/pdb3u05/pdb NDB NA1305 ? ? RCSB RCSB068138 ? ? WWPDB D_1000068138 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-12 2 'Structure model' 1 1 2014-01-08 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.value' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3U05 _pdbx_database_status.recvd_initial_deposition_date 2011-09-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3U08 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wei, D.G.' 1 'Neidle, S.' 2 # _citation.id primary _citation.title 'Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 135 _citation.page_first 1369 _citation.page_last 1377 _citation.year 2013 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23276263 _citation.pdbx_database_id_DOI 10.1021/ja308952y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wei, D.' 1 ? primary 'Wilson, W.D.' 2 ? primary 'Neidle, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole" 433.547 1 ? ? ? ? 4 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole" 804 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 804 non-polymer . "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole" DB1804 'C28 H27 N5' 433.547 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DC 9 21 21 DC DC B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 13 MG MG A . D 3 804 1 101 1 804 804 B . E 4 HOH 1 201 14 HOH HOH A . E 4 HOH 2 202 16 HOH HOH A . E 4 HOH 3 203 17 HOH HOH A . E 4 HOH 4 204 18 HOH HOH A . E 4 HOH 5 205 19 HOH HOH A . E 4 HOH 6 206 20 HOH HOH A . E 4 HOH 7 207 21 HOH HOH A . E 4 HOH 8 208 22 HOH HOH A . E 4 HOH 9 209 23 HOH HOH A . E 4 HOH 10 210 24 HOH HOH A . E 4 HOH 11 211 25 HOH HOH A . E 4 HOH 12 212 26 HOH HOH A . E 4 HOH 13 213 27 HOH HOH A . E 4 HOH 14 214 28 HOH HOH A . E 4 HOH 15 215 29 HOH HOH A . E 4 HOH 16 216 30 HOH HOH A . E 4 HOH 17 217 31 HOH HOH A . E 4 HOH 18 218 32 HOH HOH A . E 4 HOH 19 219 33 HOH HOH A . E 4 HOH 20 220 34 HOH HOH A . E 4 HOH 21 221 35 HOH HOH A . E 4 HOH 22 222 36 HOH HOH A . E 4 HOH 23 223 37 HOH HOH A . E 4 HOH 24 224 38 HOH HOH A . E 4 HOH 25 225 39 HOH HOH A . E 4 HOH 26 226 40 HOH HOH A . E 4 HOH 27 227 41 HOH HOH A . E 4 HOH 28 228 42 HOH HOH A . E 4 HOH 29 229 43 HOH HOH A . E 4 HOH 30 230 44 HOH HOH A . E 4 HOH 31 231 45 HOH HOH A . E 4 HOH 32 232 46 HOH HOH A . E 4 HOH 33 233 47 HOH HOH A . E 4 HOH 34 234 48 HOH HOH A . E 4 HOH 35 235 49 HOH HOH A . E 4 HOH 36 236 50 HOH HOH A . E 4 HOH 37 237 51 HOH HOH A . E 4 HOH 38 238 52 HOH HOH A . E 4 HOH 39 239 53 HOH HOH A . E 4 HOH 40 240 54 HOH HOH A . E 4 HOH 41 241 55 HOH HOH A . E 4 HOH 42 242 56 HOH HOH A . E 4 HOH 43 243 57 HOH HOH A . E 4 HOH 44 244 58 HOH HOH A . E 4 HOH 45 245 59 HOH HOH A . E 4 HOH 46 246 61 HOH HOH A . E 4 HOH 47 247 62 HOH HOH A . E 4 HOH 48 248 63 HOH HOH A . E 4 HOH 49 249 64 HOH HOH A . E 4 HOH 50 250 65 HOH HOH A . E 4 HOH 51 251 69 HOH HOH A . E 4 HOH 52 252 71 HOH HOH A . E 4 HOH 53 253 72 HOH HOH A . E 4 HOH 54 254 73 HOH HOH A . E 4 HOH 55 255 74 HOH HOH A . E 4 HOH 56 256 75 HOH HOH A . E 4 HOH 57 257 76 HOH HOH A . E 4 HOH 58 258 77 HOH HOH A . E 4 HOH 59 259 78 HOH HOH A . E 4 HOH 60 260 34 HOH HOH A . E 4 HOH 61 261 71 HOH HOH A . E 4 HOH 62 262 75 HOH HOH A . E 4 HOH 63 263 2 HOH HOH A . E 4 HOH 64 264 3 HOH HOH A . E 4 HOH 65 265 4 HOH HOH A . E 4 HOH 66 266 8 HOH HOH A . E 4 HOH 67 267 21 HOH HOH A . E 4 HOH 68 268 22 HOH HOH A . E 4 HOH 69 269 24 HOH HOH A . E 4 HOH 70 270 25 HOH HOH A . E 4 HOH 71 271 28 HOH HOH A . E 4 HOH 72 272 60 HOH HOH A . F 4 HOH 1 201 66 HOH HOH B . F 4 HOH 2 202 67 HOH HOH B . F 4 HOH 3 203 68 HOH HOH B . F 4 HOH 4 204 2 HOH HOH B . F 4 HOH 5 205 3 HOH HOH B . F 4 HOH 6 206 4 HOH HOH B . F 4 HOH 7 207 5 HOH HOH B . F 4 HOH 8 208 6 HOH HOH B . F 4 HOH 9 209 7 HOH HOH B . F 4 HOH 10 210 8 HOH HOH B . F 4 HOH 11 211 9 HOH HOH B . F 4 HOH 12 212 10 HOH HOH B . F 4 HOH 13 213 11 HOH HOH B . F 4 HOH 14 214 12 HOH HOH B . F 4 HOH 15 215 25 HOH HOH B . F 4 HOH 16 216 26 HOH HOH B . F 4 HOH 17 217 27 HOH HOH B . F 4 HOH 18 218 28 HOH HOH B . F 4 HOH 19 219 29 HOH HOH B . F 4 HOH 20 220 30 HOH HOH B . F 4 HOH 21 221 31 HOH HOH B . F 4 HOH 22 222 32 HOH HOH B . F 4 HOH 23 223 33 HOH HOH B . F 4 HOH 24 224 35 HOH HOH B . F 4 HOH 25 225 36 HOH HOH B . F 4 HOH 26 226 37 HOH HOH B . F 4 HOH 27 227 38 HOH HOH B . F 4 HOH 28 228 39 HOH HOH B . F 4 HOH 29 229 40 HOH HOH B . F 4 HOH 30 230 41 HOH HOH B . F 4 HOH 31 231 42 HOH HOH B . F 4 HOH 32 232 43 HOH HOH B . F 4 HOH 33 233 44 HOH HOH B . F 4 HOH 34 234 45 HOH HOH B . F 4 HOH 35 235 46 HOH HOH B . F 4 HOH 36 236 47 HOH HOH B . F 4 HOH 37 237 48 HOH HOH B . F 4 HOH 38 238 49 HOH HOH B . F 4 HOH 39 239 50 HOH HOH B . F 4 HOH 40 240 51 HOH HOH B . F 4 HOH 41 241 52 HOH HOH B . F 4 HOH 42 242 53 HOH HOH B . F 4 HOH 43 243 54 HOH HOH B . F 4 HOH 44 244 55 HOH HOH B . F 4 HOH 45 245 56 HOH HOH B . F 4 HOH 46 246 57 HOH HOH B . F 4 HOH 47 247 58 HOH HOH B . F 4 HOH 48 248 59 HOH HOH B . F 4 HOH 49 249 60 HOH HOH B . F 4 HOH 50 250 61 HOH HOH B . F 4 HOH 51 251 62 HOH HOH B . F 4 HOH 52 252 63 HOH HOH B . F 4 HOH 53 253 64 HOH HOH B . F 4 HOH 54 254 65 HOH HOH B . F 4 HOH 55 255 66 HOH HOH B . F 4 HOH 56 256 67 HOH HOH B . F 4 HOH 57 257 68 HOH HOH B . F 4 HOH 58 258 69 HOH HOH B . F 4 HOH 59 259 70 HOH HOH B . F 4 HOH 60 260 72 HOH HOH B . F 4 HOH 61 261 73 HOH HOH B . F 4 HOH 62 262 1 HOH HOH B . F 4 HOH 63 263 5 HOH HOH B . F 4 HOH 64 264 6 HOH HOH B . F 4 HOH 65 265 7 HOH HOH B . F 4 HOH 66 266 9 HOH HOH B . F 4 HOH 67 267 10 HOH HOH B . F 4 HOH 68 268 11 HOH HOH B . F 4 HOH 69 269 12 HOH HOH B . F 4 HOH 70 270 13 HOH HOH B . F 4 HOH 71 271 14 HOH HOH B . F 4 HOH 72 272 15 HOH HOH B . F 4 HOH 73 273 16 HOH HOH B . F 4 HOH 74 274 17 HOH HOH B . F 4 HOH 75 275 18 HOH HOH B . F 4 HOH 76 276 19 HOH HOH B . F 4 HOH 77 277 20 HOH HOH B . F 4 HOH 78 278 23 HOH HOH B . F 4 HOH 79 279 26 HOH HOH B . F 4 HOH 80 280 27 HOH HOH B . F 4 HOH 81 281 29 HOH HOH B . F 4 HOH 82 282 30 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 xia2 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3U05 _cell.length_a 24.100 _cell.length_b 39.880 _cell.length_c 65.790 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U05 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3U05 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 43.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'MAGNESIUM CHLORIDE, DNA, COMPOUND DB1804, MPD, SODIUM CACODYLATE BUFFER, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-08-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9796 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9796 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3U05 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 39.98 _reflns.d_resolution_high 1.02 _reflns.number_obs 52182 _reflns.number_all 62156 _reflns.percent_possible_obs 84.0 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.02 1.05 11.3 ? ? ? ? ? ? ? ? ? ? 1 2 1.05 1.08 42 ? ? ? ? ? ? ? ? ? ? 1 3 1.08 1.11 65.7 ? ? ? ? ? ? ? ? ? ? 1 4 1.11 1.14 82.3 ? ? ? ? ? ? ? ? ? ? 1 5 1.14 1.18 93.5 ? ? ? ? ? ? ? ? ? ? 1 6 1.18 1.22 99.7 ? ? ? ? ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U05 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15596 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.10 _refine.ls_d_res_high 1.27 _refine.ls_percent_reflns_obs 94.53 _refine.ls_R_factor_obs 0.20228 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20055 _refine.ls_R_factor_R_free 0.23661 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 839 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 19.243 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.061 _refine.pdbx_overall_ESU_R_Free 0.065 _refine.overall_SU_ML 0.039 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.911 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 674 _refine_hist.d_res_high 1.27 _refine_hist.d_res_low 34.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 582 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.178 3.001 ? 889 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.056 0.200 ? 94 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.023 0.020 ? 289 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.374 3.000 ? 582 'X-RAY DIFFRACTION' ? r_scangle_it 3.348 4.500 ? 889 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.270 _refine_ls_shell.d_res_low 1.303 _refine_ls_shell.number_reflns_R_work 824 _refine_ls_shell.R_factor_R_work 0.310 _refine_ls_shell.percent_reflns_obs 71.88 _refine_ls_shell.R_factor_R_free 0.352 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3U05 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3U05 _struct.title 'Crystal structure of DB1804-D(CGCGAATTCGCG)2 complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U05 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A2T2, Dickerson and Drew dodecamer, double helix, DNA minor groove-ligand complex, DNA minor groove binder, DB1804, MG2+, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3U05 _struct_ref.pdbx_db_accession 3U05 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGCGAATTCGCG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U05 A 1 ? 12 ? 3U05 1 ? 12 ? 1 12 2 1 3U05 B 1 ? 12 ? 3U05 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1530 ? 1 MORE -5 ? 1 'SSA (A^2)' 4460 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 203 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 207 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 217 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 232 1_555 ? ? ? ? ? ? ? 2.082 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 207 ? 1_555 87.4 ? 2 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 217 ? 1_555 90.3 ? 3 O ? E HOH . ? A HOH 207 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 217 ? 1_555 90.8 ? 4 O ? E HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 232 ? 1_555 175.2 ? 5 O ? E HOH . ? A HOH 207 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 232 ? 1_555 88.0 ? 6 O ? E HOH . ? A HOH 217 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 232 ? 1_555 91.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'BINDING SITE FOR RESIDUE MG A 101' AC2 Software B 804 101 ? 12 'BINDING SITE FOR RESIDUE 804 B 101' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH A 203 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 207 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 217 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 232 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 262 . ? 3_645 ? 6 AC1 6 HOH F . ? HOH B 206 . ? 3_645 ? 7 AC2 12 DA A 6 ? DA A 6 . ? 1_555 ? 8 AC2 12 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC2 12 DT A 8 ? DT A 8 . ? 1_555 ? 10 AC2 12 DC A 9 ? DC A 9 . ? 1_555 ? 11 AC2 12 HOH E . ? HOH A 272 . ? 1_555 ? 12 AC2 12 DA B 6 ? DA B 18 . ? 1_555 ? 13 AC2 12 DT B 7 ? DT B 19 . ? 1_555 ? 14 AC2 12 DT B 8 ? DT B 20 . ? 1_555 ? 15 AC2 12 DC B 9 ? DC B 21 . ? 1_555 ? 16 AC2 12 HOH F . ? HOH B 225 . ? 1_555 ? 17 AC2 12 HOH F . ? HOH B 245 . ? 1_555 ? 18 AC2 12 HOH F . ? HOH B 271 . ? 1_555 ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 804 CAA C Y N 1 804 CAB C Y N 2 804 CAC C Y N 3 804 CAD C Y N 4 804 CAE C Y N 5 804 CAF C Y N 6 804 CAG C Y N 7 804 CAH C Y N 8 804 CAI C Y N 9 804 CAJ C Y N 10 804 CAK C Y N 11 804 CAL C Y N 12 804 CAM C N N 13 804 CAN C N N 14 804 CAO C N N 15 804 CAP C N N 16 804 CAQ C N N 17 804 CAR C N N 18 804 NAS N N N 19 804 NAT N N N 20 804 NAU N N N 21 804 NAV N N N 22 804 NAW N Y N 23 804 CAX C N N 24 804 CAY C N N 25 804 CAZ C Y N 26 804 CBA C Y N 27 804 CBB C Y N 28 804 CBC C Y N 29 804 CBD C Y N 30 804 CBE C Y N 31 804 CBF C Y N 32 804 CBG C Y N 33 804 HAA H N N 34 804 HAB H N N 35 804 HAC H N N 36 804 HAD H N N 37 804 HAE H N N 38 804 HAF H N N 39 804 HAG H N N 40 804 HAH H N N 41 804 HAI H N N 42 804 HAJ H N N 43 804 HAK H N N 44 804 HAL H N N 45 804 HAM H N N 46 804 HAMA H N N 47 804 HAN H N N 48 804 HANA H N N 49 804 HAO H N N 50 804 HAOA H N N 51 804 HAP H N N 52 804 HAPA H N N 53 804 HAQ H N N 54 804 HAQA H N N 55 804 HAR H N N 56 804 HARA H N N 57 804 HNAU H N N 58 804 HNAV H N N 59 804 HNAW H N N 60 DA OP3 O N N 61 DA P P N N 62 DA OP1 O N N 63 DA OP2 O N N 64 DA "O5'" O N N 65 DA "C5'" C N N 66 DA "C4'" C N R 67 DA "O4'" O N N 68 DA "C3'" C N S 69 DA "O3'" O N N 70 DA "C2'" C N N 71 DA "C1'" C N R 72 DA N9 N Y N 73 DA C8 C Y N 74 DA N7 N Y N 75 DA C5 C Y N 76 DA C6 C Y N 77 DA N6 N N N 78 DA N1 N Y N 79 DA C2 C Y N 80 DA N3 N Y N 81 DA C4 C Y N 82 DA HOP3 H N N 83 DA HOP2 H N N 84 DA "H5'" H N N 85 DA "H5''" H N N 86 DA "H4'" H N N 87 DA "H3'" H N N 88 DA "HO3'" H N N 89 DA "H2'" H N N 90 DA "H2''" H N N 91 DA "H1'" H N N 92 DA H8 H N N 93 DA H61 H N N 94 DA H62 H N N 95 DA H2 H N N 96 DC OP3 O N N 97 DC P P N N 98 DC OP1 O N N 99 DC OP2 O N N 100 DC "O5'" O N N 101 DC "C5'" C N N 102 DC "C4'" C N R 103 DC "O4'" O N N 104 DC "C3'" C N S 105 DC "O3'" O N N 106 DC "C2'" C N N 107 DC "C1'" C N R 108 DC N1 N N N 109 DC C2 C N N 110 DC O2 O N N 111 DC N3 N N N 112 DC C4 C N N 113 DC N4 N N N 114 DC C5 C N N 115 DC C6 C N N 116 DC HOP3 H N N 117 DC HOP2 H N N 118 DC "H5'" H N N 119 DC "H5''" H N N 120 DC "H4'" H N N 121 DC "H3'" H N N 122 DC "HO3'" H N N 123 DC "H2'" H N N 124 DC "H2''" H N N 125 DC "H1'" H N N 126 DC H41 H N N 127 DC H42 H N N 128 DC H5 H N N 129 DC H6 H N N 130 DG OP3 O N N 131 DG P P N N 132 DG OP1 O N N 133 DG OP2 O N N 134 DG "O5'" O N N 135 DG "C5'" C N N 136 DG "C4'" C N R 137 DG "O4'" O N N 138 DG "C3'" C N S 139 DG "O3'" O N N 140 DG "C2'" C N N 141 DG "C1'" C N R 142 DG N9 N Y N 143 DG C8 C Y N 144 DG N7 N Y N 145 DG C5 C Y N 146 DG C6 C N N 147 DG O6 O N N 148 DG N1 N N N 149 DG C2 C N N 150 DG N2 N N N 151 DG N3 N N N 152 DG C4 C Y N 153 DG HOP3 H N N 154 DG HOP2 H N N 155 DG "H5'" H N N 156 DG "H5''" H N N 157 DG "H4'" H N N 158 DG "H3'" H N N 159 DG "HO3'" H N N 160 DG "H2'" H N N 161 DG "H2''" H N N 162 DG "H1'" H N N 163 DG H8 H N N 164 DG H1 H N N 165 DG H21 H N N 166 DG H22 H N N 167 DT OP3 O N N 168 DT P P N N 169 DT OP1 O N N 170 DT OP2 O N N 171 DT "O5'" O N N 172 DT "C5'" C N N 173 DT "C4'" C N R 174 DT "O4'" O N N 175 DT "C3'" C N S 176 DT "O3'" O N N 177 DT "C2'" C N N 178 DT "C1'" C N R 179 DT N1 N N N 180 DT C2 C N N 181 DT O2 O N N 182 DT N3 N N N 183 DT C4 C N N 184 DT O4 O N N 185 DT C5 C N N 186 DT C7 C N N 187 DT C6 C N N 188 DT HOP3 H N N 189 DT HOP2 H N N 190 DT "H5'" H N N 191 DT "H5''" H N N 192 DT "H4'" H N N 193 DT "H3'" H N N 194 DT "HO3'" H N N 195 DT "H2'" H N N 196 DT "H2''" H N N 197 DT "H1'" H N N 198 DT H3 H N N 199 DT H71 H N N 200 DT H72 H N N 201 DT H73 H N N 202 DT H6 H N N 203 HOH O O N N 204 HOH H1 H N N 205 HOH H2 H N N 206 MG MG MG N N 207 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 804 CAA CAC doub Y N 1 804 CAA CAZ sing Y N 2 804 CAB CAD sing Y N 3 804 CAB CAZ doub Y N 4 804 CAC CBB sing Y N 5 804 CAD CBB doub Y N 6 804 CAE CAG doub Y N 7 804 CAE CBC sing Y N 8 804 CAF CAH sing Y N 9 804 CAF CBC doub Y N 10 804 CAG CBD sing Y N 11 804 CAH CBD doub Y N 12 804 CAI CAJ doub Y N 13 804 CAI CBA sing Y N 14 804 CAJ CBF sing Y N 15 804 CAK CBA doub Y N 16 804 CAK CBG sing Y N 17 804 CAL CBE doub Y N 18 804 CAL CBF sing Y N 19 804 CAM CAO sing N N 20 804 CAM CAQ sing N N 21 804 CAN CAP sing N N 22 804 CAN CAR sing N N 23 804 CAO NAS sing N N 24 804 CAP NAT sing N N 25 804 CAQ NAU sing N N 26 804 CAR NAV sing N N 27 804 NAS CAX doub N N 28 804 NAT CAY doub N N 29 804 NAU CAX sing N N 30 804 NAV CAY sing N N 31 804 NAW CBE sing Y N 32 804 NAW CBG sing Y N 33 804 CAX CAZ sing N N 34 804 CAY CBA sing N N 35 804 CBB CBC sing N N 36 804 CBD CBE sing N N 37 804 CBF CBG doub Y N 38 804 CAA HAA sing N N 39 804 CAB HAB sing N N 40 804 CAC HAC sing N N 41 804 CAD HAD sing N N 42 804 CAE HAE sing N N 43 804 CAF HAF sing N N 44 804 CAG HAG sing N N 45 804 CAH HAH sing N N 46 804 CAI HAI sing N N 47 804 CAJ HAJ sing N N 48 804 CAK HAK sing N N 49 804 CAL HAL sing N N 50 804 CAM HAM sing N N 51 804 CAM HAMA sing N N 52 804 CAN HAN sing N N 53 804 CAN HANA sing N N 54 804 CAO HAO sing N N 55 804 CAO HAOA sing N N 56 804 CAP HAP sing N N 57 804 CAP HAPA sing N N 58 804 CAQ HAQ sing N N 59 804 CAQ HAQA sing N N 60 804 CAR HAR sing N N 61 804 CAR HARA sing N N 62 804 NAU HNAU sing N N 63 804 NAV HNAV sing N N 64 804 NAW HNAW sing N N 65 DA OP3 P sing N N 66 DA OP3 HOP3 sing N N 67 DA P OP1 doub N N 68 DA P OP2 sing N N 69 DA P "O5'" sing N N 70 DA OP2 HOP2 sing N N 71 DA "O5'" "C5'" sing N N 72 DA "C5'" "C4'" sing N N 73 DA "C5'" "H5'" sing N N 74 DA "C5'" "H5''" sing N N 75 DA "C4'" "O4'" sing N N 76 DA "C4'" "C3'" sing N N 77 DA "C4'" "H4'" sing N N 78 DA "O4'" "C1'" sing N N 79 DA "C3'" "O3'" sing N N 80 DA "C3'" "C2'" sing N N 81 DA "C3'" "H3'" sing N N 82 DA "O3'" "HO3'" sing N N 83 DA "C2'" "C1'" sing N N 84 DA "C2'" "H2'" sing N N 85 DA "C2'" "H2''" sing N N 86 DA "C1'" N9 sing N N 87 DA "C1'" "H1'" sing N N 88 DA N9 C8 sing Y N 89 DA N9 C4 sing Y N 90 DA C8 N7 doub Y N 91 DA C8 H8 sing N N 92 DA N7 C5 sing Y N 93 DA C5 C6 sing Y N 94 DA C5 C4 doub Y N 95 DA C6 N6 sing N N 96 DA C6 N1 doub Y N 97 DA N6 H61 sing N N 98 DA N6 H62 sing N N 99 DA N1 C2 sing Y N 100 DA C2 N3 doub Y N 101 DA C2 H2 sing N N 102 DA N3 C4 sing Y N 103 DC OP3 P sing N N 104 DC OP3 HOP3 sing N N 105 DC P OP1 doub N N 106 DC P OP2 sing N N 107 DC P "O5'" sing N N 108 DC OP2 HOP2 sing N N 109 DC "O5'" "C5'" sing N N 110 DC "C5'" "C4'" sing N N 111 DC "C5'" "H5'" sing N N 112 DC "C5'" "H5''" sing N N 113 DC "C4'" "O4'" sing N N 114 DC "C4'" "C3'" sing N N 115 DC "C4'" "H4'" sing N N 116 DC "O4'" "C1'" sing N N 117 DC "C3'" "O3'" sing N N 118 DC "C3'" "C2'" sing N N 119 DC "C3'" "H3'" sing N N 120 DC "O3'" "HO3'" sing N N 121 DC "C2'" "C1'" sing N N 122 DC "C2'" "H2'" sing N N 123 DC "C2'" "H2''" sing N N 124 DC "C1'" N1 sing N N 125 DC "C1'" "H1'" sing N N 126 DC N1 C2 sing N N 127 DC N1 C6 sing N N 128 DC C2 O2 doub N N 129 DC C2 N3 sing N N 130 DC N3 C4 doub N N 131 DC C4 N4 sing N N 132 DC C4 C5 sing N N 133 DC N4 H41 sing N N 134 DC N4 H42 sing N N 135 DC C5 C6 doub N N 136 DC C5 H5 sing N N 137 DC C6 H6 sing N N 138 DG OP3 P sing N N 139 DG OP3 HOP3 sing N N 140 DG P OP1 doub N N 141 DG P OP2 sing N N 142 DG P "O5'" sing N N 143 DG OP2 HOP2 sing N N 144 DG "O5'" "C5'" sing N N 145 DG "C5'" "C4'" sing N N 146 DG "C5'" "H5'" sing N N 147 DG "C5'" "H5''" sing N N 148 DG "C4'" "O4'" sing N N 149 DG "C4'" "C3'" sing N N 150 DG "C4'" "H4'" sing N N 151 DG "O4'" "C1'" sing N N 152 DG "C3'" "O3'" sing N N 153 DG "C3'" "C2'" sing N N 154 DG "C3'" "H3'" sing N N 155 DG "O3'" "HO3'" sing N N 156 DG "C2'" "C1'" sing N N 157 DG "C2'" "H2'" sing N N 158 DG "C2'" "H2''" sing N N 159 DG "C1'" N9 sing N N 160 DG "C1'" "H1'" sing N N 161 DG N9 C8 sing Y N 162 DG N9 C4 sing Y N 163 DG C8 N7 doub Y N 164 DG C8 H8 sing N N 165 DG N7 C5 sing Y N 166 DG C5 C6 sing N N 167 DG C5 C4 doub Y N 168 DG C6 O6 doub N N 169 DG C6 N1 sing N N 170 DG N1 C2 sing N N 171 DG N1 H1 sing N N 172 DG C2 N2 sing N N 173 DG C2 N3 doub N N 174 DG N2 H21 sing N N 175 DG N2 H22 sing N N 176 DG N3 C4 sing N N 177 DT OP3 P sing N N 178 DT OP3 HOP3 sing N N 179 DT P OP1 doub N N 180 DT P OP2 sing N N 181 DT P "O5'" sing N N 182 DT OP2 HOP2 sing N N 183 DT "O5'" "C5'" sing N N 184 DT "C5'" "C4'" sing N N 185 DT "C5'" "H5'" sing N N 186 DT "C5'" "H5''" sing N N 187 DT "C4'" "O4'" sing N N 188 DT "C4'" "C3'" sing N N 189 DT "C4'" "H4'" sing N N 190 DT "O4'" "C1'" sing N N 191 DT "C3'" "O3'" sing N N 192 DT "C3'" "C2'" sing N N 193 DT "C3'" "H3'" sing N N 194 DT "O3'" "HO3'" sing N N 195 DT "C2'" "C1'" sing N N 196 DT "C2'" "H2'" sing N N 197 DT "C2'" "H2''" sing N N 198 DT "C1'" N1 sing N N 199 DT "C1'" "H1'" sing N N 200 DT N1 C2 sing N N 201 DT N1 C6 sing N N 202 DT C2 O2 doub N N 203 DT C2 N3 sing N N 204 DT N3 C4 sing N N 205 DT N3 H3 sing N N 206 DT C4 O4 doub N N 207 DT C4 C5 sing N N 208 DT C5 C7 sing N N 209 DT C5 C6 doub N N 210 DT C7 H71 sing N N 211 DT C7 H72 sing N N 212 DT C7 H73 sing N N 213 DT C6 H6 sing N N 214 HOH O H1 sing N N 215 HOH O H2 sing N N 216 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3U05 'double helix' 3U05 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.200 -0.179 0.179 2.263 -16.161 0.739 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.179 -0.179 0.206 1.947 -5.579 -2.945 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.218 -0.131 0.155 -1.648 -7.177 0.108 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.196 -0.095 -0.011 10.478 -9.522 -0.924 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.063 -0.141 -0.082 7.870 -17.223 1.053 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.130 -0.128 0.020 3.842 -18.011 5.862 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.114 -0.116 0.008 -1.463 -19.686 5.829 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.074 -0.177 -0.054 -4.944 -15.109 2.626 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.232 -0.226 -0.006 -9.381 -10.557 -1.021 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.143 -0.153 0.204 12.605 -2.253 0.825 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.136 -0.277 0.378 5.025 -24.211 -3.018 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.359 -0.212 -0.221 8.623 19.602 -2.930 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.408 0.121 3.298 -0.225 5.855 33.590 -0.736 0.660 3.275 10.036 0.386 34.083 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.779 0.594 3.407 1.513 -2.640 41.758 1.118 -0.926 3.390 -3.698 -2.120 41.864 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.449 0.658 3.142 2.606 9.545 26.945 -0.805 1.489 3.131 19.661 -5.368 28.673 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.054 0.116 3.354 0.960 3.278 38.342 -0.242 0.041 3.353 4.979 -1.459 38.488 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.336 -0.300 3.288 -0.770 3.292 35.729 -0.958 -0.656 3.241 5.351 1.251 35.884 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.107 -0.674 3.328 0.595 0.633 30.832 -1.393 -0.084 3.316 1.190 -1.119 30.844 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.306 -0.269 3.329 1.324 1.639 35.528 -0.682 0.695 3.301 2.684 -2.167 35.588 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.038 0.253 3.403 0.600 -1.101 41.174 0.483 0.122 3.395 -1.565 -0.853 41.193 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.411 1.207 2.992 -2.421 6.209 25.984 1.075 -1.482 3.140 13.527 5.274 26.811 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.035 0.887 3.586 -3.810 -13.969 44.866 2.346 0.961 3.259 -17.764 4.845 47.029 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.456 0.680 3.503 5.148 -10.729 33.985 2.747 -1.570 3.322 -17.696 -8.491 35.951 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 3U05 _atom_sites.fract_transf_matrix[1][1] 0.041494 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025075 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015200 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_