HEADER OXIDOREDUCTASE 28-SEP-11 3U0B TITLE CRYSTAL STRUCTURE OF AN OXIDOREDUCTASE FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_0372; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS STRUCTURAL GENOMICS, SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.L.ARAKAKI,B.L.STAKER,M.C.CLIFTON,J.ABENDROTH,SEATTLE STRUCTURAL AUTHOR 2 GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 13-SEP-23 3U0B 1 REMARK SEQADV LINK REVDAT 5 07-MAR-18 3U0B 1 REMARK REVDAT 4 25-MAY-16 3U0B 1 AUTHOR REVDAT 3 15-APR-15 3U0B 1 JRNL REVDAT 2 11-MAR-15 3U0B 1 JRNL REVDAT 1 05-OCT-11 3U0B 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 562 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3107 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2045 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4238 ; 1.505 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5001 ; 1.572 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 5.721 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;32.709 ;23.689 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;10.495 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.502 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3586 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 617 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2072 ; 0.434 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 875 ; 0.065 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3303 ; 0.823 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1035 ; 1.785 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 927 ; 2.808 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6217 18.8184 -25.0717 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.1269 REMARK 3 T33: 0.1397 T12: -0.0006 REMARK 3 T13: 0.0071 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.0851 L22: 3.3733 REMARK 3 L33: 5.4198 L12: 0.3864 REMARK 3 L13: 0.2444 L23: 2.2993 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.0833 S13: 0.0119 REMARK 3 S21: 0.0759 S22: 0.0573 S23: -0.1642 REMARK 3 S31: 0.0386 S32: 0.0888 S33: -0.0725 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4667 2.5992 -21.7194 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.1211 REMARK 3 T33: 0.1456 T12: -0.0002 REMARK 3 T13: 0.0143 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.1809 L22: 1.6147 REMARK 3 L33: 1.4677 L12: 0.3314 REMARK 3 L13: -0.2486 L23: -1.1468 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.0124 S13: 0.0396 REMARK 3 S21: -0.0017 S22: -0.0342 S23: -0.1932 REMARK 3 S31: 0.0176 S32: 0.1083 S33: 0.0747 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9034 8.4680 -11.1322 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1532 REMARK 3 T33: 0.1413 T12: -0.0060 REMARK 3 T13: -0.0016 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.1528 L22: 1.0556 REMARK 3 L33: 1.0863 L12: 0.3894 REMARK 3 L13: -0.5621 L23: -0.7857 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.0592 S13: -0.0073 REMARK 3 S21: 0.0315 S22: -0.0674 S23: -0.1353 REMARK 3 S31: -0.0452 S32: 0.1535 S33: 0.0606 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8427 3.0784 -11.8893 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1415 REMARK 3 T33: 0.1416 T12: 0.0026 REMARK 3 T13: 0.0066 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2530 L22: 0.4690 REMARK 3 L33: 0.6596 L12: -0.0485 REMARK 3 L13: 0.0500 L23: -0.1095 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0157 S13: -0.0087 REMARK 3 S21: -0.0015 S22: -0.0039 S23: -0.0124 REMARK 3 S31: 0.0163 S32: 0.0238 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3461 8.0776 -28.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.1456 REMARK 3 T33: 0.1407 T12: -0.0050 REMARK 3 T13: -0.0116 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.0911 L22: 1.8586 REMARK 3 L33: 1.6039 L12: -0.0229 REMARK 3 L13: -0.5029 L23: 0.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.0218 S13: 0.0918 REMARK 3 S21: 0.0030 S22: -0.0113 S23: -0.0014 REMARK 3 S31: -0.0781 S32: 0.0186 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3995 5.8795 -29.6687 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1363 REMARK 3 T33: 0.1353 T12: 0.0118 REMARK 3 T13: -0.0002 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.8684 L22: 0.5473 REMARK 3 L33: 0.9341 L12: 0.5088 REMARK 3 L13: -0.0855 L23: -0.1074 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0356 S13: 0.0972 REMARK 3 S21: 0.0099 S22: -0.0098 S23: 0.0568 REMARK 3 S31: -0.0872 S32: -0.0853 S33: -0.0173 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7518 4.8429 -12.9802 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1386 REMARK 3 T33: 0.1394 T12: 0.0074 REMARK 3 T13: -0.0045 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.3475 L22: 0.7060 REMARK 3 L33: 1.4041 L12: -0.1763 REMARK 3 L13: -0.2499 L23: 0.6682 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0356 S13: 0.0318 REMARK 3 S21: 0.0095 S22: -0.0133 S23: 0.0471 REMARK 3 S31: -0.0724 S32: -0.0819 S33: 0.0156 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 345 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7438 5.0524 -9.0894 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.1456 REMARK 3 T33: 0.1337 T12: -0.0030 REMARK 3 T13: -0.0034 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.6814 L22: 0.0469 REMARK 3 L33: 1.0243 L12: -0.2002 REMARK 3 L13: -0.2375 L23: 0.0466 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0044 S13: 0.0165 REMARK 3 S21: 0.0201 S22: -0.0167 S23: -0.0236 REMARK 3 S31: -0.0240 S32: -0.0357 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 391 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5408 27.2009 -10.7128 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.3100 REMARK 3 T33: 0.5265 T12: 0.1438 REMARK 3 T13: 0.0947 T23: -0.1886 REMARK 3 L TENSOR REMARK 3 L11: 11.9379 L22: 4.1558 REMARK 3 L33: 32.6043 L12: -2.6600 REMARK 3 L13: 14.4361 L23: 5.5813 REMARK 3 S TENSOR REMARK 3 S11: 0.1619 S12: -1.3447 S13: 2.3826 REMARK 3 S21: -0.6210 S22: -1.9959 S23: 0.1822 REMARK 3 S31: -0.9370 S32: -3.3228 S33: 1.8340 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 408 A 450 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6558 10.5575 -14.4374 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1428 REMARK 3 T33: 0.1413 T12: -0.0022 REMARK 3 T13: 0.0122 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2238 L22: 0.9346 REMARK 3 L33: 0.5464 L12: 0.2766 REMARK 3 L13: 0.1601 L23: -0.0722 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0248 S13: 0.0453 REMARK 3 S21: 0.0491 S22: 0.0143 S23: 0.0187 REMARK 3 S31: -0.0680 S32: 0.0025 S33: -0.0153 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3U0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39290 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LLS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYSMA.00010.A AT 29.8 MG/ML, 25% PEG REMARK 280 1500, 0.1 M MMT, PH 6.0 , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.36500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.36500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 ASN A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 PRO A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 LYS A 392 REMARK 465 MET A 393 REMARK 465 THR A 394 REMARK 465 GLU A 395 REMARK 465 ALA A 396 REMARK 465 ILE A 397 REMARK 465 PRO A 398 REMARK 465 LEU A 399 REMARK 465 ALA A 400 REMARK 465 THR A 401 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 404 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 921 O HOH A 968 3445 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 121 118.65 -37.53 REMARK 500 LEU A 316 -56.21 -126.87 REMARK 500 SER A 342 -158.24 -86.08 REMARK 500 SER A 432 30.51 -96.94 REMARK 500 GLN A 445 66.65 62.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 451 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 61 O REMARK 620 2 TYR A 64 O 83.2 REMARK 620 3 HOH A 558 O 78.2 82.6 REMARK 620 4 HOH A 806 O 144.7 98.6 67.2 REMARK 620 5 HOH A 846 O 81.2 164.5 93.7 93.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 451 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYSMA.00010.A RELATED DB: TARGETDB DBREF 3U0B A 1 450 UNP A0QPE7 A0QPE7_MYCS2 1 450 SEQADV 3U0B GLY A -3 UNP A0QPE7 EXPRESSION TAG SEQADV 3U0B PRO A -2 UNP A0QPE7 EXPRESSION TAG SEQADV 3U0B GLY A -1 UNP A0QPE7 EXPRESSION TAG SEQADV 3U0B SER A 0 UNP A0QPE7 EXPRESSION TAG SEQRES 1 A 454 GLY PRO GLY SER MET ALA SER ASP LEU PHE SER GLN VAL SEQRES 2 A 454 VAL ASN SER GLY PRO GLY SER PHE LEU ALA LYS GLN LEU SEQRES 3 A 454 GLY VAL PRO GLN PRO GLU THR LEU ARG ARG TYR ARG PRO SEQRES 4 A 454 GLY ASP PRO PRO LEU ALA GLY SER LEU LEU ILE GLY GLY SEQRES 5 A 454 SER GLY ARG VAL ALA GLU PRO LEU ARG THR ALA LEU ALA SEQRES 6 A 454 ASP ASP TYR ASN LEU VAL SER ASN ASN ILE GLY GLY ARG SEQRES 7 A 454 TRP ALA ASP SER PHE GLY GLY VAL VAL PHE ASP ALA THR SEQRES 8 A 454 GLY ILE THR GLU ALA GLU GLY LEU LYS GLU LEU TYR THR SEQRES 9 A 454 PHE PHE THR PRO LEU LEU ARG ASN LEU ALA PRO CYS ALA SEQRES 10 A 454 ARG VAL VAL VAL VAL GLY THR THR PRO ALA GLU ALA GLY SEQRES 11 A 454 SER VAL HIS ALA GLN VAL VAL GLN ARG ALA LEU GLU GLY SEQRES 12 A 454 PHE THR ARG SER LEU GLY LYS GLU LEU ARG ARG GLY ALA SEQRES 13 A 454 THR VAL SER LEU VAL TYR LEU SER ALA ASP ALA LYS PRO SEQRES 14 A 454 GLY ALA THR GLY LEU GLU SER THR MET ARG PHE ILE LEU SEQRES 15 A 454 SER ALA LYS SER ALA TYR VAL ASP GLY GLN VAL PHE ARG SEQRES 16 A 454 VAL GLY ALA ALA ASP SER THR PRO PRO ALA ASP TRP ASP SEQRES 17 A 454 LYS PRO LEU ASP GLY LYS VAL ALA VAL VAL THR GLY ALA SEQRES 18 A 454 ALA ARG GLY ILE GLY ALA THR ILE ALA GLU VAL PHE ALA SEQRES 19 A 454 ARG ASP GLY ALA THR VAL VAL ALA ILE ASP VAL ASP GLY SEQRES 20 A 454 ALA ALA GLU ASP LEU LYS ARG VAL ALA ASP LYS VAL GLY SEQRES 21 A 454 GLY THR ALA LEU THR LEU ASP VAL THR ALA ASP ASP ALA SEQRES 22 A 454 VAL ASP LYS ILE THR ALA HIS VAL THR GLU HIS HIS GLY SEQRES 23 A 454 GLY LYS VAL ASP ILE LEU VAL ASN ASN ALA GLY ILE THR SEQRES 24 A 454 ARG ASP LYS LEU LEU ALA ASN MET ASP GLU LYS ARG TRP SEQRES 25 A 454 ASP ALA VAL ILE ALA VAL ASN LEU LEU ALA PRO GLN ARG SEQRES 26 A 454 LEU THR GLU GLY LEU VAL GLY ASN GLY THR ILE GLY GLU SEQRES 27 A 454 GLY GLY ARG VAL ILE GLY LEU SER SER MET ALA GLY ILE SEQRES 28 A 454 ALA GLY ASN ARG GLY GLN THR ASN TYR ALA THR THR LYS SEQRES 29 A 454 ALA GLY MET ILE GLY LEU ALA GLU ALA LEU ALA PRO VAL SEQRES 30 A 454 LEU ALA ASP LYS GLY ILE THR ILE ASN ALA VAL ALA PRO SEQRES 31 A 454 GLY PHE ILE GLU THR LYS MET THR GLU ALA ILE PRO LEU SEQRES 32 A 454 ALA THR ARG GLU VAL GLY ARG ARG LEU ASN SER LEU PHE SEQRES 33 A 454 GLN GLY GLY GLN PRO VAL ASP VAL ALA GLU LEU ILE ALA SEQRES 34 A 454 TYR PHE ALA SER PRO ALA SER ASN ALA VAL THR GLY ASN SEQRES 35 A 454 THR ILE ARG VAL CYS GLY GLN ALA MET LEU GLY ALA HET NA A 451 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *562(H2 O) HELIX 1 1 VAL A 52 ALA A 61 1 10 HELIX 2 2 GLU A 91 GLY A 94 5 4 HELIX 3 3 LEU A 95 THR A 103 1 9 HELIX 4 4 PRO A 104 ARG A 107 5 4 HELIX 5 5 PRO A 122 ALA A 125 5 4 HELIX 6 6 SER A 127 LYS A 146 1 20 HELIX 7 7 ALA A 167 GLY A 169 5 3 HELIX 8 8 LEU A 170 LEU A 178 1 9 HELIX 9 9 SER A 179 ALA A 183 5 5 HELIX 10 10 ARG A 219 ASP A 232 1 14 HELIX 11 11 VAL A 241 GLY A 243 5 3 HELIX 12 12 ALA A 244 GLY A 256 1 13 HELIX 13 13 ASP A 268 HIS A 281 1 14 HELIX 14 14 LEU A 299 MET A 303 5 5 HELIX 15 15 ASP A 304 LEU A 316 1 13 HELIX 16 16 LEU A 316 ASN A 329 1 14 HELIX 17 17 SER A 343 GLY A 349 1 7 HELIX 18 18 GLN A 353 ASP A 376 1 24 HELIX 19 19 GLU A 403 LEU A 408 1 6 HELIX 20 20 GLN A 416 SER A 429 1 14 HELIX 21 21 PRO A 430 ASN A 433 5 4 SHEET 1 A 6 LEU A 66 VAL A 67 0 SHEET 2 A 6 SER A 43 GLY A 47 1 N LEU A 44 O VAL A 67 SHEET 3 A 6 PHE A 79 ASP A 85 1 O VAL A 83 N LEU A 45 SHEET 4 A 6 LEU A 109 THR A 120 1 O VAL A 116 N PHE A 84 SHEET 5 A 6 THR A 153 LEU A 159 1 O VAL A 157 N GLY A 119 SHEET 6 A 6 GLN A 188 VAL A 192 1 O VAL A 192 N TYR A 158 SHEET 1 B 7 THR A 258 THR A 261 0 SHEET 2 B 7 THR A 235 ASP A 240 1 N ALA A 238 O THR A 258 SHEET 3 B 7 VAL A 211 VAL A 214 1 N ALA A 212 O VAL A 237 SHEET 4 B 7 ILE A 287 ASN A 290 1 O VAL A 289 N VAL A 213 SHEET 5 B 7 ARG A 337 LEU A 341 1 O ILE A 339 N LEU A 288 SHEET 6 B 7 THR A 380 PRO A 386 1 O ASN A 382 N GLY A 340 SHEET 7 B 7 THR A 439 VAL A 442 1 O ILE A 440 N ALA A 383 LINK O ALA A 61 NA NA A 451 1555 1555 2.21 LINK O TYR A 64 NA NA A 451 1555 1555 2.38 LINK NA NA A 451 O HOH A 558 1555 1555 2.56 LINK NA NA A 451 O HOH A 806 1555 1555 2.51 LINK NA NA A 451 O HOH A 846 1555 1555 2.48 SITE 1 AC1 6 ALA A 61 TYR A 64 HOH A 558 HOH A 806 SITE 2 AC1 6 HOH A 846 HOH A 847 CRYST1 102.730 58.220 76.880 90.00 127.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009734 0.000000 0.007556 0.00000 SCALE2 0.000000 0.017176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016466 0.00000