HEADER TRANSFERASE 28-SEP-11 3U0E TITLE CRYSTAL STRUCTURE OF BETA-KETOACYL SYNTHASE FROM BRUCELLA MELITENSIS TITLE 2 IN COMPLEX WITH FRAGMENT 9320 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-KETOACYL SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.41; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOVAR ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: FABB, BAB1_2173; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS BETA-KETOACYL SYNTHASE, BRUCELLA MELITENSIS, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 FRAGMENTS OF LIFE, 8-METHYLQUINOLIN-4-AMINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3U0E 1 REMARK REVDAT 3 26-JUL-23 3U0E 1 JRNL REMARK SEQADV LINK REVDAT 2 21-AUG-19 3U0E 1 JRNL REVDAT 1 26-OCT-11 3U0E 0 JRNL AUTH E.I.PATTERSON,J.D.NANSON,J.ABENDROTH,C.BRYAN,B.SANKARAN, JRNL AUTH 2 P.J.MYLER,J.K.FORWOOD JRNL TITL STRUCTURAL CHARACTERIZATION OF BETA-KETOACYL ACP SYNTHASE I JRNL TITL 2 BOUND TO PLATENCIN AND FRAGMENT SCREENING MOLECULES AT TWO JRNL TITL 3 SUBSTRATE BINDING SITES. JRNL REF PROTEINS V. 88 47 2020 JRNL REFN ESSN 1097-0134 JRNL PMID 31237717 JRNL DOI 10.1002/PROT.25765 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 53077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2713 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3198 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2151 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4347 ; 1.589 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5254 ; 0.968 ; 2.995 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 6.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;38.394 ;23.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 541 ;11.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.555 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3677 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 660 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6520 1.8720 17.4040 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.0268 REMARK 3 T33: 0.0509 T12: -0.0135 REMARK 3 T13: 0.0238 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.4732 L22: 0.3619 REMARK 3 L33: 0.1992 L12: 0.0452 REMARK 3 L13: -0.0345 L23: -0.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0981 S13: -0.0170 REMARK 3 S21: -0.0579 S22: 0.0325 S23: -0.0227 REMARK 3 S31: 0.0023 S32: 0.0027 S33: -0.0029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3U0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 FOR SHELL : 5.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NATIVE STRUCTURE 3LRF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MD PACT SCREEN, H12: 20% PEG 3350, REMARK 280 100MM BISTRISPROPANE PH 8.5, 200MM NA-MALONATE, CRYSTAL SOAKED REMARK 280 100MM MES PH 6.5, 250MM NACL, 30% PEG 3350, 10% GLYCEROL, REMARK 280 BRABA.00113.A.A1.PW25441 AT 22.9MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.03500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.60888 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.76284 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 338 O HOH A 598 2.03 REMARK 500 O HOH A 470 O HOH A 700 2.11 REMARK 500 OD2 ASP A 61 O HOH A 423 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 159 43.01 -164.35 REMARK 500 ALA A 160 -128.44 55.70 REMARK 500 ARG A 218 61.27 -156.96 REMARK 500 TYR A 220 -7.46 77.50 REMARK 500 ASP A 225 31.21 -140.35 REMARK 500 TYR A 265 -79.47 -135.33 REMARK 500 ALA A 297 106.15 -9.60 REMARK 500 SER A 299 31.42 83.70 REMARK 500 LEU A 335 -110.40 56.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 121 OE2 REMARK 620 2 GLU A 121 OE1 53.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 294 OD1 REMARK 620 2 ASN A 294 O 78.3 REMARK 620 3 PRO A 295 O 82.1 72.7 REMARK 620 4 GLU A 342 OE1 83.4 156.9 91.0 REMARK 620 5 SER A 388 OG 91.2 85.9 158.4 108.7 REMARK 620 6 ASN A 389 O 171.6 98.9 89.5 97.2 96.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 07K A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LRF RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 3MQD RELATED DB: PDB REMARK 900 PROTEIN IN COMPLEX WITH FRAGMENT 758 REMARK 900 RELATED ID: BRABA.00113.A RELATED DB: TARGETDB REMARK 900 RELATED ID: 3U0F RELATED DB: PDB REMARK 900 PROTEIN IN COMPLEX WITH 7-HYDROXYCOUMARIN DBREF 3U0E A 1 407 UNP Q2YQQ9 Q2YQQ9_BRUA2 1 407 SEQADV 3U0E MET A -20 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E ALA A -19 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E HIS A -18 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E HIS A -17 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E HIS A -16 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E HIS A -15 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E HIS A -14 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E HIS A -13 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E MET A -12 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E GLY A -11 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E THR A -10 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E LEU A -9 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E GLU A -8 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E ALA A -7 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E GLN A -6 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E THR A -5 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E GLN A -4 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E GLY A -3 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E PRO A -2 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E GLY A -1 UNP Q2YQQ9 EXPRESSION TAG SEQADV 3U0E SER A 0 UNP Q2YQQ9 EXPRESSION TAG SEQRES 1 A 428 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 428 ALA GLN THR GLN GLY PRO GLY SER MET ARG ARG VAL VAL SEQRES 3 A 428 VAL THR GLY MET GLY ILE VAL SER SER ILE GLY SER ASN SEQRES 4 A 428 THR GLU GLU VAL THR ALA SER LEU ARG GLU ALA LYS SER SEQRES 5 A 428 GLY ILE SER ARG ALA GLU GLU TYR ALA GLU LEU GLY PHE SEQRES 6 A 428 ARG CYS GLN VAL HIS GLY ALA PRO ASP ILE ASP ILE GLU SEQRES 7 A 428 SER LEU VAL ASP ARG ARG ALA MET ARG PHE HIS GLY ARG SEQRES 8 A 428 GLY THR ALA TRP ASN HIS ILE ALA MET ASP GLN ALA ILE SEQRES 9 A 428 ALA ASP ALA GLY LEU THR GLU GLU GLU VAL SER ASN GLU SEQRES 10 A 428 ARG THR GLY ILE ILE MET GLY SER GLY GLY PRO SER THR SEQRES 11 A 428 ARG THR ILE VAL ASP SER ALA ASP ILE THR ARG GLU LYS SEQRES 12 A 428 GLY PRO LYS ARG VAL GLY PRO PHE ALA VAL PRO LYS ALA SEQRES 13 A 428 MET SER SER THR ALA SER ALA THR LEU ALA THR PHE PHE SEQRES 14 A 428 LYS ILE LYS GLY ILE ASN TYR SER ILE SER SER ALA CYS SEQRES 15 A 428 ALA THR SER ASN HIS CYS ILE GLY ASN ALA TYR GLU MET SEQRES 16 A 428 ILE GLN TYR GLY LYS GLN ASP ARG MET PHE ALA GLY GLY SEQRES 17 A 428 CYS GLU ASP LEU ASP TRP THR LEU SER VAL LEU PHE ASP SEQRES 18 A 428 ALA MET GLY ALA MET SER SER LYS TYR ASN ASP THR PRO SEQRES 19 A 428 SER THR ALA SER ARG ALA TYR ASP LYS ASN ARG ASP GLY SEQRES 20 A 428 PHE VAL ILE ALA GLY GLY ALA GLY VAL LEU VAL LEU GLU SEQRES 21 A 428 ASP LEU GLU THR ALA LEU ALA ARG GLY ALA LYS ILE TYR SEQRES 22 A 428 GLY GLU ILE VAL GLY TYR GLY ALA THR SER ASP GLY TYR SEQRES 23 A 428 ASP MET VAL ALA PRO SER GLY GLU GLY ALA ILE ARG CYS SEQRES 24 A 428 MET LYS MET ALA LEU SER THR VAL THR SER LYS ILE ASP SEQRES 25 A 428 TYR ILE ASN PRO HIS ALA THR SER THR PRO ALA GLY ASP SEQRES 26 A 428 ALA PRO GLU ILE GLU ALA ILE ARG GLN ILE PHE GLY ALA SEQRES 27 A 428 GLY ASP VAL CYS PRO PRO ILE ALA ALA THR LYS SER LEU SEQRES 28 A 428 THR GLY HIS SER LEU GLY ALA THR GLY VAL GLN GLU ALA SEQRES 29 A 428 ILE TYR SER LEU LEU MET MET GLN ASN ASN PHE ILE CYS SEQRES 30 A 428 GLU SER ALA HIS ILE GLU GLU LEU ASP PRO ALA PHE ALA SEQRES 31 A 428 ASP MET PRO ILE VAL ARG LYS ARG ILE ASP ASN VAL GLN SEQRES 32 A 428 LEU ASN THR VAL LEU SER ASN SER PHE GLY PHE GLY GLY SEQRES 33 A 428 THR ASN ALA THR LEU VAL PHE GLN ARG TYR GLN GLY HET NA A 500 1 HET CL A 502 1 HET NA A 503 1 HET 07K A 408 12 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM 07K 8-METHYLQUINOLIN-4-AMINE FORMUL 2 NA 2(NA 1+) FORMUL 3 CL CL 1- FORMUL 5 07K C10 H10 N2 FORMUL 6 HOH *471(H2 O) HELIX 1 1 ASN A 18 ALA A 29 1 12 HELIX 2 2 ALA A 36 GLY A 43 1 8 HELIX 3 3 ASP A 55 LEU A 59 5 5 HELIX 4 4 ARG A 62 ARG A 66 5 5 HELIX 5 5 GLY A 69 GLY A 87 1 19 HELIX 6 6 THR A 89 SER A 94 1 6 HELIX 7 7 SER A 108 GLY A 123 1 16 HELIX 8 8 PRO A 124 GLY A 128 5 5 HELIX 9 9 ALA A 131 MET A 136 1 6 HELIX 10 10 SER A 138 LYS A 149 1 12 HELIX 11 11 SER A 159 CYS A 161 5 3 HELIX 12 12 ALA A 162 TYR A 177 1 16 HELIX 13 13 ASP A 192 ALA A 201 1 10 HELIX 14 14 THR A 212 ALA A 216 5 5 HELIX 15 15 LEU A 241 ARG A 247 1 7 HELIX 16 16 GLY A 272 SER A 284 1 13 HELIX 17 17 THR A 300 GLY A 316 1 17 HELIX 18 18 ALA A 317 CYS A 321 5 5 HELIX 19 19 THR A 327 GLY A 332 1 6 HELIX 20 20 SER A 334 GLY A 336 5 3 HELIX 21 21 ALA A 337 ASN A 353 1 17 HELIX 22 22 ASP A 365 ALA A 369 5 5 SHEET 1 A 9 ASN A 154 TYR A 155 0 SHEET 2 A 9 THR A 98 SER A 104 1 N ILE A 100 O TYR A 155 SHEET 3 A 9 ARG A 182 GLU A 189 1 O PHE A 184 N GLY A 99 SHEET 4 A 9 GLY A 232 ASP A 240 -1 O LEU A 238 N MET A 183 SHEET 5 A 9 VAL A 4 VAL A 12 -1 N VAL A 5 O GLU A 239 SHEET 6 A 9 GLY A 253 SER A 262 -1 O GLY A 253 N VAL A 6 SHEET 7 A 9 THR A 396 GLN A 403 -1 O GLN A 403 N GLU A 254 SHEET 8 A 9 THR A 385 GLY A 392 -1 N VAL A 386 O PHE A 402 SHEET 9 A 9 TYR A 292 ASN A 294 1 N ASN A 294 O LEU A 387 SHEET 1 B 2 SER A 34 ARG A 35 0 SHEET 2 B 2 VAL A 48 HIS A 49 -1 O HIS A 49 N SER A 34 SHEET 1 C 2 PHE A 354 ILE A 355 0 SHEET 2 C 2 ILE A 378 ASP A 379 -1 O ILE A 378 N ILE A 355 LINK OE2 GLU A 121 NA NA A 503 1555 1555 1.92 LINK OE1 GLU A 121 NA NA A 503 1555 1555 2.80 LINK OD1 ASN A 294 NA NA A 500 1555 1555 2.35 LINK O ASN A 294 NA NA A 500 1555 1555 2.59 LINK O PRO A 295 NA NA A 500 1555 1555 2.84 LINK OE1 GLU A 342 NA NA A 500 1555 1555 2.33 LINK OG SER A 388 NA NA A 500 1555 1555 2.58 LINK O ASN A 389 NA NA A 500 1555 1555 2.47 SITE 1 AC1 5 ASN A 294 PRO A 295 GLU A 342 SER A 388 SITE 2 AC1 5 ASN A 389 SITE 1 AC2 2 ASP A 266 MET A 267 SITE 1 AC3 1 GLU A 121 SITE 1 AC4 7 LEU A 283 VAL A 286 SER A 288 LYS A 289 SITE 2 AC4 7 ILE A 314 HOH A 585 HOH A 851 CRYST1 78.070 83.750 73.610 90.00 121.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012809 0.000000 0.007849 0.00000 SCALE2 0.000000 0.011940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015933 0.00000