HEADER ISOMERASE 28-SEP-11 3U0H TITLE THE STRUCTURE OF A XYLOSE ISOMERASE DOMAIN PROTEIN FROM TITLE 2 ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. SOURCE 3 ACIDOCALDARIUS; SOURCE 4 ORGANISM_TAXID: 521098; SOURCE 5 STRAIN: DSM 446; SOURCE 6 GENE: AACI_2157; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, TIM BARREL, PUTATIVE XYLOSE ISOMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,G.CHHOR,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 08-NOV-17 3U0H 1 REMARK REVDAT 1 09-NOV-11 3U0H 0 JRNL AUTH M.E.CUFF,G.CHHOR,J.BEARDEN,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A XYLOSE ISOMERASE DOMAIN PROTEIN FROM JRNL TITL 2 ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1669 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 2.79000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4604 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3212 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6268 ; 1.759 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7732 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 6.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;33.142 ;21.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 737 ;15.595 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;21.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5134 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1002 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3145 61.8178 44.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1331 REMARK 3 T33: 0.0219 T12: -0.0411 REMARK 3 T13: 0.0332 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 1.0661 L22: 0.7366 REMARK 3 L33: 1.4328 L12: -0.0071 REMARK 3 L13: -0.0232 L23: 0.3410 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: -0.1252 S13: 0.0949 REMARK 3 S21: 0.0595 S22: -0.0030 S23: 0.0106 REMARK 3 S31: -0.2890 S32: 0.0830 S33: -0.0859 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5203 16.5465 41.3318 REMARK 3 T TENSOR REMARK 3 T11: 0.2108 T22: 0.1638 REMARK 3 T33: 0.4990 T12: 0.0131 REMARK 3 T13: -0.1324 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 1.5515 L22: 1.7916 REMARK 3 L33: 1.5649 L12: 0.0902 REMARK 3 L13: 0.4866 L23: 0.2798 REMARK 3 S TENSOR REMARK 3 S11: 0.1627 S12: -0.2205 S13: -0.8116 REMARK 3 S21: 0.3214 S22: 0.0687 S23: -0.1369 REMARK 3 S31: 0.4034 S32: 0.0638 S33: -0.2314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3U0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.97937 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.1, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS:HCL, 1.0M AMONIUM PHOSPHATE, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.67800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.67800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.77750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 120.16450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.77750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 120.16450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.67800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.77750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 120.16450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.67800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.77750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 120.16450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: LIKELY AB DIMER OF THE AU, OR A2B2 TETRAMER REMARK 300 X,Y,Z REMARK 300 -X,Y,-Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.67800 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 0 O ARG B 241 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 180 CE2 TRP A 180 CD2 0.083 REMARK 500 HIS A 186 CG HIS A 186 CD2 0.066 REMARK 500 HIS A 250 CG HIS A 250 CD2 0.063 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 233 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 233 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 59.66 -96.53 REMARK 500 PHE A 152 -138.60 -118.64 REMARK 500 ASN A 204 -173.92 174.59 REMARK 500 ARG A 241 56.25 -140.27 REMARK 500 VAL A 248 75.53 -113.63 REMARK 500 PHE B 152 -135.60 -120.80 REMARK 500 ASN B 204 -179.87 -176.96 REMARK 500 PRO B 227 96.95 -68.51 REMARK 500 VAL B 248 78.93 -111.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100342 RELATED DB: TARGETDB DBREF 3U0H A 1 278 UNP C8WQZ7 C8WQZ7_ALIAD 1 278 DBREF 3U0H B 1 278 UNP C8WQZ7 C8WQZ7_ALIAD 1 278 SEQADV 3U0H SER A -2 UNP C8WQZ7 EXPRESSION TAG SEQADV 3U0H ASN A -1 UNP C8WQZ7 EXPRESSION TAG SEQADV 3U0H ALA A 0 UNP C8WQZ7 EXPRESSION TAG SEQADV 3U0H SER B -2 UNP C8WQZ7 EXPRESSION TAG SEQADV 3U0H ASN B -1 UNP C8WQZ7 EXPRESSION TAG SEQADV 3U0H ALA B 0 UNP C8WQZ7 EXPRESSION TAG SEQRES 1 A 281 SER ASN ALA MSE GLU PRO CYS LEU HIS PRO THR LEU VAL SEQRES 2 A 281 ASP GLU THR SER LEU VAL LEU TYR LEU ASP LEU ALA ARG SEQRES 3 A 281 GLU THR GLY TYR ARG TYR VAL ASP VAL PRO PHE HIS TRP SEQRES 4 A 281 LEU GLU ALA GLU ALA GLU ARG HIS GLY ASP ALA ALA VAL SEQRES 5 A 281 GLU ALA MSE PHE GLN ARG ARG GLY LEU VAL LEU ALA ASN SEQRES 6 A 281 LEU GLY LEU PRO LEU ASN LEU TYR ASP SER GLU PRO VAL SEQRES 7 A 281 PHE LEU ARG GLU LEU SER LEU LEU PRO ASP ARG ALA ARG SEQRES 8 A 281 LEU CYS ALA ARG LEU GLY ALA ARG SER VAL THR ALA PHE SEQRES 9 A 281 LEU TRP PRO SER MSE ASP GLU GLU PRO VAL ARG TYR ILE SEQRES 10 A 281 SER GLN LEU ALA ARG ARG ILE ARG GLN VAL ALA VAL GLU SEQRES 11 A 281 LEU LEU PRO LEU GLY MSE ARG VAL GLY LEU GLU TYR VAL SEQRES 12 A 281 GLY PRO HIS HIS LEU ARG HIS ARG ARG TYR PRO PHE VAL SEQRES 13 A 281 GLN SER LEU ALA ASP LEU LYS THR PHE TRP GLU ALA ILE SEQRES 14 A 281 GLY ALA PRO ASN VAL GLY ALA LEU VAL ASP SER TYR HIS SEQRES 15 A 281 TRP TYR THR ALA GLY GLU HIS GLU ASP ASP LEU ALA GLN SEQRES 16 A 281 LEU PRO PRO GLU LYS VAL VAL TYR VAL HIS ILE ASN ASP SEQRES 17 A 281 THR ARG ASP ALA PRO GLU ASP ALA HIS ASP GLY LYS ARG SEQRES 18 A 281 LEU LEU PRO GLY ASP GLY ARG ILE PRO LEU VAL PRO PHE SEQRES 19 A 281 LEU ARG GLY LEU TYR LEU ALA GLY TYR ARG GLY PRO VAL SEQRES 20 A 281 ALA ALA GLU VAL LEU HIS GLU THR PRO LEU ASP GLY THR SEQRES 21 A 281 GLY GLU SER ARG ALA ARG LEU VAL ARG GLU ARG LEU GLU SEQRES 22 A 281 LYS LEU ILE ALA LEU ALA LYS GLY SEQRES 1 B 281 SER ASN ALA MSE GLU PRO CYS LEU HIS PRO THR LEU VAL SEQRES 2 B 281 ASP GLU THR SER LEU VAL LEU TYR LEU ASP LEU ALA ARG SEQRES 3 B 281 GLU THR GLY TYR ARG TYR VAL ASP VAL PRO PHE HIS TRP SEQRES 4 B 281 LEU GLU ALA GLU ALA GLU ARG HIS GLY ASP ALA ALA VAL SEQRES 5 B 281 GLU ALA MSE PHE GLN ARG ARG GLY LEU VAL LEU ALA ASN SEQRES 6 B 281 LEU GLY LEU PRO LEU ASN LEU TYR ASP SER GLU PRO VAL SEQRES 7 B 281 PHE LEU ARG GLU LEU SER LEU LEU PRO ASP ARG ALA ARG SEQRES 8 B 281 LEU CYS ALA ARG LEU GLY ALA ARG SER VAL THR ALA PHE SEQRES 9 B 281 LEU TRP PRO SER MSE ASP GLU GLU PRO VAL ARG TYR ILE SEQRES 10 B 281 SER GLN LEU ALA ARG ARG ILE ARG GLN VAL ALA VAL GLU SEQRES 11 B 281 LEU LEU PRO LEU GLY MSE ARG VAL GLY LEU GLU TYR VAL SEQRES 12 B 281 GLY PRO HIS HIS LEU ARG HIS ARG ARG TYR PRO PHE VAL SEQRES 13 B 281 GLN SER LEU ALA ASP LEU LYS THR PHE TRP GLU ALA ILE SEQRES 14 B 281 GLY ALA PRO ASN VAL GLY ALA LEU VAL ASP SER TYR HIS SEQRES 15 B 281 TRP TYR THR ALA GLY GLU HIS GLU ASP ASP LEU ALA GLN SEQRES 16 B 281 LEU PRO PRO GLU LYS VAL VAL TYR VAL HIS ILE ASN ASP SEQRES 17 B 281 THR ARG ASP ALA PRO GLU ASP ALA HIS ASP GLY LYS ARG SEQRES 18 B 281 LEU LEU PRO GLY ASP GLY ARG ILE PRO LEU VAL PRO PHE SEQRES 19 B 281 LEU ARG GLY LEU TYR LEU ALA GLY TYR ARG GLY PRO VAL SEQRES 20 B 281 ALA ALA GLU VAL LEU HIS GLU THR PRO LEU ASP GLY THR SEQRES 21 B 281 GLY GLU SER ARG ALA ARG LEU VAL ARG GLU ARG LEU GLU SEQRES 22 B 281 LYS LEU ILE ALA LEU ALA LYS GLY MODRES 3U0H MSE A 1 MET SELENOMETHIONINE MODRES 3U0H MSE A 52 MET SELENOMETHIONINE MODRES 3U0H MSE A 106 MET SELENOMETHIONINE MODRES 3U0H MSE A 133 MET SELENOMETHIONINE MODRES 3U0H MSE B 1 MET SELENOMETHIONINE MODRES 3U0H MSE B 52 MET SELENOMETHIONINE MODRES 3U0H MSE B 106 MET SELENOMETHIONINE MODRES 3U0H MSE B 133 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 52 8 HET MSE A 106 8 HET MSE A 133 8 HET MSE B 1 8 HET MSE B 52 8 HET MSE B 106 8 HET MSE B 133 8 HET PO4 A 279 5 HET EDO A 280 4 HET EDO A 281 4 HET EDO A 282 4 HET GOL A 283 6 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *249(H2 O) HELIX 1 1 HIS A 6 VAL A 10 5 5 HELIX 2 2 SER A 14 THR A 25 1 12 HELIX 3 3 PRO A 33 GLY A 45 1 13 HELIX 4 4 GLY A 45 ARG A 55 1 11 HELIX 5 5 SER A 72 LEU A 82 1 11 HELIX 6 6 LEU A 82 LEU A 93 1 12 HELIX 7 7 GLU A 109 LEU A 129 1 21 HELIX 8 8 PRO A 130 GLY A 132 5 3 HELIX 9 9 PRO A 142 ARG A 146 5 5 HELIX 10 10 SER A 155 GLY A 167 1 13 HELIX 11 11 SER A 177 ALA A 183 1 7 HELIX 12 12 HIS A 186 GLN A 192 1 7 HELIX 13 13 PRO A 194 GLU A 196 5 3 HELIX 14 14 PRO A 227 GLY A 239 1 13 HELIX 15 15 THR A 257 GLY A 278 1 22 HELIX 16 16 HIS B 6 VAL B 10 5 5 HELIX 17 17 SER B 14 THR B 25 1 12 HELIX 18 18 PRO B 33 HIS B 44 1 12 HELIX 19 19 GLY B 45 ARG B 56 1 12 HELIX 20 20 SER B 72 LEU B 93 1 22 HELIX 21 21 GLU B 109 LEU B 129 1 21 HELIX 22 22 PRO B 130 GLY B 132 5 3 HELIX 23 23 PRO B 142 HIS B 147 5 6 HELIX 24 24 SER B 155 GLY B 167 1 13 HELIX 25 25 SER B 177 ALA B 183 1 7 HELIX 26 26 HIS B 186 GLN B 192 1 7 HELIX 27 27 PRO B 194 GLU B 196 5 3 HELIX 28 28 PRO B 227 GLY B 239 1 13 HELIX 29 29 THR B 257 LYS B 277 1 21 SHEET 1 A 9 VAL A 59 LEU A 60 0 SHEET 2 A 9 TYR A 29 VAL A 30 1 N VAL A 30 O VAL A 59 SHEET 3 A 9 GLU A 2 LEU A 5 1 N LEU A 5 O TYR A 29 SHEET 4 A 9 PRO A 243 ALA A 246 1 O VAL A 244 N GLU A 2 SHEET 5 A 9 VAL A 198 ILE A 203 1 N ILE A 203 O ALA A 245 SHEET 6 A 9 VAL A 171 ASP A 176 1 N ALA A 173 O VAL A 199 SHEET 7 A 9 ARG A 134 GLU A 138 1 N VAL A 135 O GLY A 172 SHEET 8 A 9 SER A 97 PHE A 101 1 N ALA A 100 O GLU A 138 SHEET 9 A 9 LEU A 63 GLY A 64 1 N LEU A 63 O SER A 97 SHEET 1 B 2 SER A 105 MSE A 106 0 SHEET 2 B 2 TYR A 150 PRO A 151 -1 O TYR A 150 N MSE A 106 SHEET 1 C 9 VAL B 59 LEU B 60 0 SHEET 2 C 9 TYR B 29 VAL B 30 1 N VAL B 30 O VAL B 59 SHEET 3 C 9 GLU B 2 LEU B 5 1 N LEU B 5 O TYR B 29 SHEET 4 C 9 PRO B 243 ALA B 245 1 O VAL B 244 N GLU B 2 SHEET 5 C 9 VAL B 198 HIS B 202 1 N VAL B 201 O ALA B 245 SHEET 6 C 9 VAL B 171 ASP B 176 1 N VAL B 175 O HIS B 202 SHEET 7 C 9 ARG B 134 GLU B 138 1 N VAL B 135 O GLY B 172 SHEET 8 C 9 SER B 97 PHE B 101 1 N ALA B 100 O GLU B 138 SHEET 9 C 9 LEU B 63 GLY B 64 1 N LEU B 63 O THR B 99 SHEET 1 D 2 SER B 105 MSE B 106 0 SHEET 2 D 2 TYR B 150 PRO B 151 -1 O TYR B 150 N MSE B 106 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.34 LINK C ALA A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N PHE A 53 1555 1555 1.33 LINK C SER A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N ASP A 107 1555 1555 1.33 LINK C GLY A 132 N MSE A 133 1555 1555 1.31 LINK C MSE A 133 N ARG A 134 1555 1555 1.31 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.32 LINK C ALA B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N PHE B 53 1555 1555 1.34 LINK C SER B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N ASP B 107 1555 1555 1.34 LINK C GLY B 132 N MSE B 133 1555 1555 1.34 LINK C MSE B 133 N ARG B 134 1555 1555 1.33 SITE 1 AC1 3 ARG A 43 ARG A 148 ARG A 225 SITE 1 AC2 4 HIS A 179 ASP A 215 ARG A 218 LEU A 249 SITE 1 AC3 4 ARG A 122 GLY A 167 ARG B 122 GLY B 167 SITE 1 AC4 4 ASP A 31 ASN A 62 GLY A 64 HOH A 410 SITE 1 AC5 5 GLU A 73 GLN A 116 ARG A 119 GLU B 164 SITE 2 AC5 5 HOH B 306 CRYST1 53.555 240.329 113.356 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008822 0.00000