data_3U13 # _entry.id 3U13 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3U13 pdb_00003u13 10.2210/pdb3u13/pdb RCSB RCSB068172 ? ? WWPDB D_1000068172 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-23 2 'Structure model' 1 1 2013-12-11 3 'Structure model' 1 2 2023-09-13 4 'Structure model' 1 3 2023-12-06 5 'Structure model' 1 4 2024-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_struct_special_symmetry 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 5 'Structure model' pdbx_entry_details 12 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 32 4 'Structure model' '_chem_comp_atom.atom_id' 33 4 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_database_status.entry_id 3U13 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-29 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Q92 '95% homology' unspecified TargetDB OR51 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Sahdev, S.' 4 'Xiao, R.' 5 'Kohan, E.' 6 'Richter, F.' 7 'Everett, J.K.' 8 'Acton, T.B.' 9 'Baker, D.' 10 'Montelione, G.T.' 11 'Hunt, J.F.' 12 'Tong, L.' 13 'Northeast Structural Genomics Consortium (NESG)' 14 # _citation.id primary _citation.title 'Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 16197 _citation.page_last 16206 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22871159 _citation.pdbx_database_id_DOI 10.1021/ja3037367 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richter, F.' 1 ? primary 'Blomberg, R.' 2 ? primary 'Khare, S.D.' 3 ? primary 'Kiss, G.' 4 ? primary 'Kuzin, A.P.' 5 ? primary 'Smith, A.J.' 6 ? primary 'Gallaher, J.' 7 ? primary 'Pianowski, Z.' 8 ? primary 'Helgeson, R.C.' 9 ? primary 'Grjasnow, A.' 10 ? primary 'Xiao, R.' 11 ? primary 'Seetharaman, J.' 12 ? primary 'Su, M.' 13 ? primary 'Vorobiev, S.' 14 ? primary 'Lew, S.' 15 ? primary 'Forouhar, F.' 16 ? primary 'Kornhaber, G.J.' 17 ? primary 'Hunt, J.F.' 18 ? primary 'Montelione, G.T.' 19 ? primary 'Tong, L.' 20 ? primary 'Houk, K.N.' 21 ? primary 'Hilvert, D.' 22 ? primary 'Baker, D.' 23 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'artificial protein OR51' 24193.996 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 248 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;5',3'-nucleotidase, mitochondrial, Deoxy-5'-nucleotidase 2, dNT-2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GGRALRVLVD(MSE)DGVLADVEGGLLRKFRARFPDQPFIALEDRRGYKACEQYGRLRPGLSEKARSIAESKNFF FELEPLPGAVEAVKE(MSE)ASLQNTDVFICTSPHK(MSE)FKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLI DDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPCGSLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MGGRALRVLVDMDGVLADVEGGLLRKFRARFPDQPFIALEDRRGYKACEQYGRLRPGLSEKARSIAESKNFFFELEPLPG AVEAVKEMASLQNTDVFICTSPHKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWE HVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPCGSLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier OR51 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 'MAGNESIUM ION' MG 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'SODIUM ION' NA 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 GLY n 1 4 ARG n 1 5 ALA n 1 6 LEU n 1 7 ARG n 1 8 VAL n 1 9 LEU n 1 10 VAL n 1 11 ASP n 1 12 MSE n 1 13 ASP n 1 14 GLY n 1 15 VAL n 1 16 LEU n 1 17 ALA n 1 18 ASP n 1 19 VAL n 1 20 GLU n 1 21 GLY n 1 22 GLY n 1 23 LEU n 1 24 LEU n 1 25 ARG n 1 26 LYS n 1 27 PHE n 1 28 ARG n 1 29 ALA n 1 30 ARG n 1 31 PHE n 1 32 PRO n 1 33 ASP n 1 34 GLN n 1 35 PRO n 1 36 PHE n 1 37 ILE n 1 38 ALA n 1 39 LEU n 1 40 GLU n 1 41 ASP n 1 42 ARG n 1 43 ARG n 1 44 GLY n 1 45 TYR n 1 46 LYS n 1 47 ALA n 1 48 CYS n 1 49 GLU n 1 50 GLN n 1 51 TYR n 1 52 GLY n 1 53 ARG n 1 54 LEU n 1 55 ARG n 1 56 PRO n 1 57 GLY n 1 58 LEU n 1 59 SER n 1 60 GLU n 1 61 LYS n 1 62 ALA n 1 63 ARG n 1 64 SER n 1 65 ILE n 1 66 ALA n 1 67 GLU n 1 68 SER n 1 69 LYS n 1 70 ASN n 1 71 PHE n 1 72 PHE n 1 73 PHE n 1 74 GLU n 1 75 LEU n 1 76 GLU n 1 77 PRO n 1 78 LEU n 1 79 PRO n 1 80 GLY n 1 81 ALA n 1 82 VAL n 1 83 GLU n 1 84 ALA n 1 85 VAL n 1 86 LYS n 1 87 GLU n 1 88 MSE n 1 89 ALA n 1 90 SER n 1 91 LEU n 1 92 GLN n 1 93 ASN n 1 94 THR n 1 95 ASP n 1 96 VAL n 1 97 PHE n 1 98 ILE n 1 99 CYS n 1 100 THR n 1 101 SER n 1 102 PRO n 1 103 HIS n 1 104 LYS n 1 105 MSE n 1 106 PHE n 1 107 LYS n 1 108 TYR n 1 109 CYS n 1 110 PRO n 1 111 TYR n 1 112 GLU n 1 113 LYS n 1 114 TYR n 1 115 ALA n 1 116 TRP n 1 117 VAL n 1 118 GLU n 1 119 LYS n 1 120 TYR n 1 121 PHE n 1 122 GLY n 1 123 PRO n 1 124 ASP n 1 125 PHE n 1 126 LEU n 1 127 GLU n 1 128 GLN n 1 129 ILE n 1 130 VAL n 1 131 LEU n 1 132 THR n 1 133 ARG n 1 134 ASP n 1 135 LYS n 1 136 THR n 1 137 VAL n 1 138 VAL n 1 139 SER n 1 140 ALA n 1 141 ASP n 1 142 LEU n 1 143 LEU n 1 144 ILE n 1 145 ASP n 1 146 ASP n 1 147 ARG n 1 148 PRO n 1 149 ASP n 1 150 ILE n 1 151 THR n 1 152 GLY n 1 153 ALA n 1 154 GLU n 1 155 PRO n 1 156 THR n 1 157 PRO n 1 158 SER n 1 159 TRP n 1 160 GLU n 1 161 HIS n 1 162 VAL n 1 163 LEU n 1 164 PHE n 1 165 THR n 1 166 ALA n 1 167 CYS n 1 168 HIS n 1 169 ASN n 1 170 GLN n 1 171 HIS n 1 172 LEU n 1 173 GLN n 1 174 LEU n 1 175 GLN n 1 176 PRO n 1 177 PRO n 1 178 ARG n 1 179 ARG n 1 180 ARG n 1 181 LEU n 1 182 HIS n 1 183 SER n 1 184 TRP n 1 185 ALA n 1 186 ASP n 1 187 ASP n 1 188 TRP n 1 189 LYS n 1 190 ALA n 1 191 ILE n 1 192 LEU n 1 193 ASP n 1 194 SER n 1 195 LYS n 1 196 ARG n 1 197 PRO n 1 198 CYS n 1 199 GLY n 1 200 SER n 1 201 LEU n 1 202 GLU n 1 203 HIS n 1 204 HIS n 1 205 HIS n 1 206 HIS n 1 207 HIS n 1 208 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'BL21(DE3)' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET29b+ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 MSE 12 12 12 MSE MSE A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 MSE 88 88 88 MSE MSE A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 HIS 103 103 103 HIS HIS A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 MSE 105 105 105 MSE MSE A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 CYS 109 109 109 CYS CYS A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 TRP 116 116 116 TRP TRP A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 HIS 161 161 161 HIS HIS A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 CYS 167 167 167 CYS CYS A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 HIS 171 171 171 HIS HIS A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 GLN 173 173 173 GLN GLN A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 GLN 175 175 175 GLN GLN A . n A 1 176 PRO 176 176 176 PRO PRO A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 HIS 182 182 182 HIS HIS A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 TRP 188 188 188 TRP TRP A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 PRO 197 197 197 PRO PRO A . n A 1 198 CYS 198 198 ? ? ? A . n A 1 199 GLY 199 199 ? ? ? A . n A 1 200 SER 200 200 ? ? ? A . n A 1 201 LEU 201 201 ? ? ? A . n A 1 202 GLU 202 202 ? ? ? A . n A 1 203 HIS 203 203 ? ? ? A . n A 1 204 HIS 204 204 ? ? ? A . n A 1 205 HIS 205 205 ? ? ? A . n A 1 206 HIS 206 206 ? ? ? A . n A 1 207 HIS 207 207 ? ? ? A . n A 1 208 HIS 208 208 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 209 1 PO4 PO4 A . C 3 MG 1 1003 1003 MG MG A . D 2 PO4 1 210 2 PO4 PO4 A . E 4 PEG 1 211 1 PEG PEG A . F 5 NA 1 212 1 NA NA A . G 6 HOH 1 213 213 HOH HOH A . G 6 HOH 2 214 214 HOH HOH A . G 6 HOH 3 215 215 HOH HOH A . G 6 HOH 4 216 216 HOH HOH A . G 6 HOH 5 217 217 HOH HOH A . G 6 HOH 6 218 218 HOH HOH A . G 6 HOH 7 219 219 HOH HOH A . G 6 HOH 8 220 220 HOH HOH A . G 6 HOH 9 221 221 HOH HOH A . G 6 HOH 10 222 222 HOH HOH A . G 6 HOH 11 223 223 HOH HOH A . G 6 HOH 12 224 224 HOH HOH A . G 6 HOH 13 225 225 HOH HOH A . G 6 HOH 14 226 226 HOH HOH A . G 6 HOH 15 227 227 HOH HOH A . G 6 HOH 16 228 228 HOH HOH A . G 6 HOH 17 229 229 HOH HOH A . G 6 HOH 18 230 230 HOH HOH A . G 6 HOH 19 231 231 HOH HOH A . G 6 HOH 20 232 232 HOH HOH A . G 6 HOH 21 233 233 HOH HOH A . G 6 HOH 22 234 234 HOH HOH A . G 6 HOH 23 235 235 HOH HOH A . G 6 HOH 24 236 236 HOH HOH A . G 6 HOH 25 237 237 HOH HOH A . G 6 HOH 26 238 238 HOH HOH A . G 6 HOH 27 239 239 HOH HOH A . G 6 HOH 28 240 240 HOH HOH A . G 6 HOH 29 241 241 HOH HOH A . G 6 HOH 30 242 242 HOH HOH A . G 6 HOH 31 243 243 HOH HOH A . G 6 HOH 32 244 244 HOH HOH A . G 6 HOH 33 245 245 HOH HOH A . G 6 HOH 34 246 246 HOH HOH A . G 6 HOH 35 247 247 HOH HOH A . G 6 HOH 36 248 248 HOH HOH A . G 6 HOH 37 249 249 HOH HOH A . G 6 HOH 38 250 250 HOH HOH A . G 6 HOH 39 251 251 HOH HOH A . G 6 HOH 40 252 252 HOH HOH A . G 6 HOH 41 253 1 HOH HOH A . G 6 HOH 42 254 2 HOH HOH A . G 6 HOH 43 255 3 HOH HOH A . G 6 HOH 44 256 4 HOH HOH A . G 6 HOH 45 257 5 HOH HOH A . G 6 HOH 46 258 6 HOH HOH A . G 6 HOH 47 259 7 HOH HOH A . G 6 HOH 48 260 8 HOH HOH A . G 6 HOH 49 261 9 HOH HOH A . G 6 HOH 50 262 10 HOH HOH A . G 6 HOH 51 263 11 HOH HOH A . G 6 HOH 52 264 12 HOH HOH A . G 6 HOH 53 265 13 HOH HOH A . G 6 HOH 54 266 14 HOH HOH A . G 6 HOH 55 267 15 HOH HOH A . G 6 HOH 56 268 16 HOH HOH A . G 6 HOH 57 269 17 HOH HOH A . G 6 HOH 58 270 18 HOH HOH A . G 6 HOH 59 271 19 HOH HOH A . G 6 HOH 60 272 20 HOH HOH A . G 6 HOH 61 273 21 HOH HOH A . G 6 HOH 62 274 22 HOH HOH A . G 6 HOH 63 275 23 HOH HOH A . G 6 HOH 64 276 24 HOH HOH A . G 6 HOH 65 277 25 HOH HOH A . G 6 HOH 66 278 26 HOH HOH A . G 6 HOH 67 279 27 HOH HOH A . G 6 HOH 68 280 28 HOH HOH A . G 6 HOH 69 281 29 HOH HOH A . G 6 HOH 70 282 30 HOH HOH A . G 6 HOH 71 283 31 HOH HOH A . G 6 HOH 72 284 32 HOH HOH A . G 6 HOH 73 285 33 HOH HOH A . G 6 HOH 74 286 34 HOH HOH A . G 6 HOH 75 287 35 HOH HOH A . G 6 HOH 76 288 36 HOH HOH A . G 6 HOH 77 289 37 HOH HOH A . G 6 HOH 78 290 38 HOH HOH A . G 6 HOH 79 291 39 HOH HOH A . G 6 HOH 80 292 40 HOH HOH A . G 6 HOH 81 293 41 HOH HOH A . G 6 HOH 82 294 42 HOH HOH A . G 6 HOH 83 295 43 HOH HOH A . G 6 HOH 84 296 44 HOH HOH A . G 6 HOH 85 297 45 HOH HOH A . G 6 HOH 86 298 46 HOH HOH A . G 6 HOH 87 299 47 HOH HOH A . G 6 HOH 88 300 48 HOH HOH A . G 6 HOH 89 301 49 HOH HOH A . G 6 HOH 90 302 50 HOH HOH A . G 6 HOH 91 303 51 HOH HOH A . G 6 HOH 92 304 52 HOH HOH A . G 6 HOH 93 305 53 HOH HOH A . G 6 HOH 94 306 54 HOH HOH A . G 6 HOH 95 307 55 HOH HOH A . G 6 HOH 96 308 56 HOH HOH A . G 6 HOH 97 309 57 HOH HOH A . G 6 HOH 98 310 58 HOH HOH A . G 6 HOH 99 311 59 HOH HOH A . G 6 HOH 100 312 60 HOH HOH A . G 6 HOH 101 313 61 HOH HOH A . G 6 HOH 102 314 62 HOH HOH A . G 6 HOH 103 315 64 HOH HOH A . G 6 HOH 104 316 65 HOH HOH A . G 6 HOH 105 317 66 HOH HOH A . G 6 HOH 106 318 67 HOH HOH A . G 6 HOH 107 319 68 HOH HOH A . G 6 HOH 108 320 69 HOH HOH A . G 6 HOH 109 321 70 HOH HOH A . G 6 HOH 110 322 71 HOH HOH A . G 6 HOH 111 323 72 HOH HOH A . G 6 HOH 112 324 73 HOH HOH A . G 6 HOH 113 325 74 HOH HOH A . G 6 HOH 114 326 75 HOH HOH A . G 6 HOH 115 327 76 HOH HOH A . G 6 HOH 116 328 77 HOH HOH A . G 6 HOH 117 329 78 HOH HOH A . G 6 HOH 118 330 79 HOH HOH A . G 6 HOH 119 331 80 HOH HOH A . G 6 HOH 120 332 81 HOH HOH A . G 6 HOH 121 333 82 HOH HOH A . G 6 HOH 122 334 83 HOH HOH A . G 6 HOH 123 335 84 HOH HOH A . G 6 HOH 124 336 85 HOH HOH A . G 6 HOH 125 337 86 HOH HOH A . G 6 HOH 126 338 87 HOH HOH A . G 6 HOH 127 339 88 HOH HOH A . G 6 HOH 128 340 89 HOH HOH A . G 6 HOH 129 341 90 HOH HOH A . G 6 HOH 130 342 91 HOH HOH A . G 6 HOH 131 343 92 HOH HOH A . G 6 HOH 132 344 93 HOH HOH A . G 6 HOH 133 345 94 HOH HOH A . G 6 HOH 134 346 95 HOH HOH A . G 6 HOH 135 347 96 HOH HOH A . G 6 HOH 136 348 97 HOH HOH A . G 6 HOH 137 349 98 HOH HOH A . G 6 HOH 138 350 99 HOH HOH A . G 6 HOH 139 351 100 HOH HOH A . G 6 HOH 140 352 101 HOH HOH A . G 6 HOH 141 353 102 HOH HOH A . G 6 HOH 142 354 103 HOH HOH A . G 6 HOH 143 355 104 HOH HOH A . G 6 HOH 144 356 105 HOH HOH A . G 6 HOH 145 357 106 HOH HOH A . G 6 HOH 146 358 107 HOH HOH A . G 6 HOH 147 359 108 HOH HOH A . G 6 HOH 148 360 109 HOH HOH A . G 6 HOH 149 361 110 HOH HOH A . G 6 HOH 150 362 111 HOH HOH A . G 6 HOH 151 363 112 HOH HOH A . G 6 HOH 152 364 113 HOH HOH A . G 6 HOH 153 365 114 HOH HOH A . G 6 HOH 154 366 116 HOH HOH A . G 6 HOH 155 367 117 HOH HOH A . G 6 HOH 156 368 118 HOH HOH A . G 6 HOH 157 369 119 HOH HOH A . G 6 HOH 158 370 120 HOH HOH A . G 6 HOH 159 371 121 HOH HOH A . G 6 HOH 160 372 122 HOH HOH A . G 6 HOH 161 373 123 HOH HOH A . G 6 HOH 162 374 125 HOH HOH A . G 6 HOH 163 375 126 HOH HOH A . G 6 HOH 164 376 127 HOH HOH A . G 6 HOH 165 377 128 HOH HOH A . G 6 HOH 166 378 129 HOH HOH A . G 6 HOH 167 379 130 HOH HOH A . G 6 HOH 168 380 131 HOH HOH A . G 6 HOH 169 381 132 HOH HOH A . G 6 HOH 170 382 133 HOH HOH A . G 6 HOH 171 383 134 HOH HOH A . G 6 HOH 172 384 135 HOH HOH A . G 6 HOH 173 385 136 HOH HOH A . G 6 HOH 174 386 137 HOH HOH A . G 6 HOH 175 387 138 HOH HOH A . G 6 HOH 176 388 139 HOH HOH A . G 6 HOH 177 389 140 HOH HOH A . G 6 HOH 178 390 141 HOH HOH A . G 6 HOH 179 391 142 HOH HOH A . G 6 HOH 180 392 143 HOH HOH A . G 6 HOH 181 393 144 HOH HOH A . G 6 HOH 182 394 145 HOH HOH A . G 6 HOH 183 395 146 HOH HOH A . G 6 HOH 184 396 147 HOH HOH A . G 6 HOH 185 397 148 HOH HOH A . G 6 HOH 186 398 149 HOH HOH A . G 6 HOH 187 399 150 HOH HOH A . G 6 HOH 188 400 151 HOH HOH A . G 6 HOH 189 401 152 HOH HOH A . G 6 HOH 190 402 153 HOH HOH A . G 6 HOH 191 403 154 HOH HOH A . G 6 HOH 192 404 155 HOH HOH A . G 6 HOH 193 405 156 HOH HOH A . G 6 HOH 194 406 157 HOH HOH A . G 6 HOH 195 407 158 HOH HOH A . G 6 HOH 196 408 159 HOH HOH A . G 6 HOH 197 409 160 HOH HOH A . G 6 HOH 198 410 161 HOH HOH A . G 6 HOH 199 411 162 HOH HOH A . G 6 HOH 200 412 163 HOH HOH A . G 6 HOH 201 413 164 HOH HOH A . G 6 HOH 202 414 165 HOH HOH A . G 6 HOH 203 415 166 HOH HOH A . G 6 HOH 204 416 167 HOH HOH A . G 6 HOH 205 417 168 HOH HOH A . G 6 HOH 206 418 169 HOH HOH A . G 6 HOH 207 419 170 HOH HOH A . G 6 HOH 208 420 171 HOH HOH A . G 6 HOH 209 421 172 HOH HOH A . G 6 HOH 210 422 173 HOH HOH A . G 6 HOH 211 423 174 HOH HOH A . G 6 HOH 212 424 175 HOH HOH A . G 6 HOH 213 425 176 HOH HOH A . G 6 HOH 214 426 177 HOH HOH A . G 6 HOH 215 427 178 HOH HOH A . G 6 HOH 216 428 179 HOH HOH A . G 6 HOH 217 429 180 HOH HOH A . G 6 HOH 218 430 181 HOH HOH A . G 6 HOH 219 431 182 HOH HOH A . G 6 HOH 220 432 183 HOH HOH A . G 6 HOH 221 433 184 HOH HOH A . G 6 HOH 222 434 185 HOH HOH A . G 6 HOH 223 435 186 HOH HOH A . G 6 HOH 224 436 188 HOH HOH A . G 6 HOH 225 437 189 HOH HOH A . G 6 HOH 226 438 190 HOH HOH A . G 6 HOH 227 439 191 HOH HOH A . G 6 HOH 228 440 192 HOH HOH A . G 6 HOH 229 441 193 HOH HOH A . G 6 HOH 230 442 194 HOH HOH A . G 6 HOH 231 443 195 HOH HOH A . G 6 HOH 232 444 196 HOH HOH A . G 6 HOH 233 445 197 HOH HOH A . G 6 HOH 234 446 198 HOH HOH A . G 6 HOH 235 447 199 HOH HOH A . G 6 HOH 236 448 200 HOH HOH A . G 6 HOH 237 449 201 HOH HOH A . G 6 HOH 238 450 202 HOH HOH A . G 6 HOH 239 451 203 HOH HOH A . G 6 HOH 240 452 204 HOH HOH A . G 6 HOH 241 453 205 HOH HOH A . G 6 HOH 242 454 206 HOH HOH A . G 6 HOH 243 455 207 HOH HOH A . G 6 HOH 244 456 208 HOH HOH A . G 6 HOH 245 457 209 HOH HOH A . G 6 HOH 246 458 210 HOH HOH A . G 6 HOH 247 459 211 HOH HOH A . G 6 HOH 248 460 212 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 BALBES . ? ? ? ? phasing ? ? ? # _cell.entry_id 3U13 _cell.length_a 73.436 _cell.length_b 73.436 _cell.length_c 105.083 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U13 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3U13 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.92 _exptl_crystal.density_percent_sol 57.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5) . Reservoir solution:0.1M NaHPO4, 0.1M MES, PEG 20K 12%, VAPOR DIFFUSION, SITTING DROP, temperature 277KK ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2011-05-12 _diffrn_detector.details 'Rh coated flat mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3U13 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 72527 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 48.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.539 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 8.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U13 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 38618 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.039 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs 99.92 _refine.ls_R_factor_obs 0.1808 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1802 _refine.ls_R_factor_R_free 0.1928 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 1932 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.25 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.7080 _refine.aniso_B[2][2] -0.7080 _refine.aniso_B[3][3] 1.4161 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.382 _refine.solvent_model_param_bsol 50.229 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'pdb entry 1Q92' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.35 _refine.pdbx_overall_phase_error 16.57 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1585 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 248 _refine_hist.number_atoms_total 1852 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 29.039 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1688 'X-RAY DIFFRACTION' ? f_angle_d 1.214 ? ? 2295 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.839 ? ? 645 'X-RAY DIFFRACTION' ? f_chiral_restr 0.082 ? ? 240 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 300 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.5995 1.6395 2557 0.2442 100.00 0.2402 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.6395 1.6838 2570 0.2191 100.00 0.2441 . . 135 . . . . 'X-RAY DIFFRACTION' . 1.6838 1.7333 2572 0.1963 100.00 0.2095 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.7333 1.7893 2590 0.1843 100.00 0.2495 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.7893 1.8532 2585 0.1777 100.00 0.2102 . . 118 . . . . 'X-RAY DIFFRACTION' . 1.8532 1.9274 2575 0.1646 100.00 0.1882 . . 157 . . . . 'X-RAY DIFFRACTION' . 1.9274 2.0151 2568 0.1693 100.00 0.1937 . . 155 . . . . 'X-RAY DIFFRACTION' . 2.0151 2.1213 2601 0.1654 100.00 0.1684 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.1213 2.2542 2630 0.1695 100.00 0.1797 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.2542 2.4281 2618 0.1727 100.00 0.2186 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.4281 2.6723 2648 0.1857 100.00 0.1914 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.6723 3.0587 2665 0.1817 100.00 0.2118 . . 133 . . . . 'X-RAY DIFFRACTION' . 3.0587 3.8522 2678 0.1656 100.00 0.1704 . . 149 . . . . 'X-RAY DIFFRACTION' . 3.8522 29.0434 2829 0.1918 99.00 0.1841 . . 138 . . . . # _struct.entry_id 3U13 _struct.title ;Crystal Structure of de Novo design of cystein esterase ECH13 at the resolution 1.6A, Northeast Structural Genomics Consortium Target OR51 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U13 _struct_keywords.text 'Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, ECH13, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3U13 _struct_ref.pdbx_db_accession 3U13 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3U13 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 208 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3U13 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 208 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3330 ? 1 MORE -62 ? 1 'SSA (A^2)' 18190 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 52.5415000000 # _struct_biol.id 1 _struct_biol.details 'authors indicate the biological unit as a trimer of 61.03 kD at 96.3%' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? PHE A 31 ? ASP A 18 PHE A 31 1 ? 14 HELX_P HELX_P2 2 ALA A 38 ? ARG A 42 ? ALA A 38 ARG A 42 5 ? 5 HELX_P HELX_P3 3 LYS A 46 ? ARG A 55 ? LYS A 46 ARG A 55 1 ? 10 HELX_P HELX_P4 4 GLY A 57 ? GLU A 67 ? GLY A 57 GLU A 67 1 ? 11 HELX_P HELX_P5 5 GLY A 80 ? LEU A 91 ? GLY A 80 LEU A 91 1 ? 12 HELX_P HELX_P6 6 TYR A 108 ? GLY A 122 ? TYR A 108 GLY A 122 1 ? 15 HELX_P HELX_P7 7 PRO A 123 ? GLU A 127 ? PRO A 123 GLU A 127 5 ? 5 HELX_P HELX_P8 8 ASP A 187 ? SER A 194 ? ASP A 187 SER A 194 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 11 C ? ? ? 1_555 A MSE 12 N ? ? A ASP 11 A MSE 12 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale2 covale both ? A MSE 12 C ? ? ? 1_555 A ASP 13 N ? ? A MSE 12 A ASP 13 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? A GLU 87 C ? ? ? 1_555 A MSE 88 N ? ? A GLU 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 88 C ? ? ? 1_555 A ALA 89 N ? ? A MSE 88 A ALA 89 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A LYS 104 C ? ? ? 1_555 A MSE 105 N ? ? A LYS 104 A MSE 105 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A MSE 105 C ? ? ? 1_555 A PHE 106 N ? ? A MSE 105 A PHE 106 1_555 ? ? ? ? ? ? ? 1.334 ? ? metalc1 metalc ? ? A ASP 11 OD2 ? ? ? 1_555 C MG . MG ? ? A ASP 11 A MG 1003 1_555 ? ? ? ? ? ? ? 2.447 ? ? metalc2 metalc ? ? A ASP 13 O ? ? ? 1_555 C MG . MG ? ? A ASP 13 A MG 1003 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc3 metalc ? ? A ASP 146 OD1 ? ? ? 1_555 C MG . MG ? ? A ASP 146 A MG 1003 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc4 metalc ? ? B PO4 . O2 ? ? ? 1_555 C MG . MG ? ? A PO4 209 A MG 1003 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc5 metalc ? ? F NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 212 A HOH 259 1_555 ? ? ? ? ? ? ? 3.149 ? ? metalc6 metalc ? ? G HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 271 A MG 1003 1_555 ? ? ? ? ? ? ? 2.522 ? ? metalc7 metalc ? ? G HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 377 A MG 1003 1_555 ? ? ? ? ? ? ? 2.921 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 11 ? A ASP 11 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? A ASP 13 ? A ASP 13 ? 1_555 88.7 ? 2 OD2 ? A ASP 11 ? A ASP 11 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 OD1 ? A ASP 146 ? A ASP 146 ? 1_555 76.1 ? 3 O ? A ASP 13 ? A ASP 13 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 OD1 ? A ASP 146 ? A ASP 146 ? 1_555 89.3 ? 4 OD2 ? A ASP 11 ? A ASP 11 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O2 ? B PO4 . ? A PO4 209 ? 1_555 108.3 ? 5 O ? A ASP 13 ? A ASP 13 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O2 ? B PO4 . ? A PO4 209 ? 1_555 99.7 ? 6 OD1 ? A ASP 146 ? A ASP 146 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O2 ? B PO4 . ? A PO4 209 ? 1_555 170.0 ? 7 OD2 ? A ASP 11 ? A ASP 11 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 271 ? 1_555 84.0 ? 8 O ? A ASP 13 ? A ASP 13 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 271 ? 1_555 172.7 ? 9 OD1 ? A ASP 146 ? A ASP 146 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 271 ? 1_555 89.0 ? 10 O2 ? B PO4 . ? A PO4 209 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 271 ? 1_555 82.7 ? 11 OD2 ? A ASP 11 ? A ASP 11 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 377 ? 1_555 146.1 ? 12 O ? A ASP 13 ? A ASP 13 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 377 ? 1_555 74.1 ? 13 OD1 ? A ASP 146 ? A ASP 146 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 377 ? 1_555 74.7 ? 14 O2 ? B PO4 . ? A PO4 209 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 377 ? 1_555 103.4 ? 15 O ? G HOH . ? A HOH 271 ? 1_555 MG ? C MG . ? A MG 1003 ? 1_555 O ? G HOH . ? A HOH 377 ? 1_555 112.2 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 12 ? . . . . MSE A 12 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 88 ? . . . . MSE A 88 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 105 ? . . . . MSE A 105 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 3 A . ? GLY 3 A ARG 4 A ? ARG 4 A 1 -2.30 2 PRO 176 A . ? PRO 176 A PRO 177 A ? PRO 177 A 1 5.05 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 129 ? LEU A 131 ? ILE A 129 LEU A 131 A 2 THR A 94 ? THR A 100 ? THR A 94 THR A 100 A 3 LEU A 6 ? VAL A 10 ? LEU A 6 VAL A 10 A 4 LEU A 142 ? ASP A 145 ? LEU A 142 ASP A 145 A 5 GLU A 160 ? PHE A 164 ? GLU A 160 PHE A 164 A 6 ARG A 179 ? LEU A 181 ? ARG A 179 LEU A 181 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 130 ? O VAL A 130 N ILE A 98 ? N ILE A 98 A 2 3 O ASP A 95 ? O ASP A 95 N LEU A 6 ? N LEU A 6 A 3 4 N LEU A 9 ? N LEU A 9 O LEU A 142 ? O LEU A 142 A 4 5 N LEU A 143 ? N LEU A 143 O VAL A 162 ? O VAL A 162 A 5 6 N LEU A 163 ? N LEU A 163 O ARG A 179 ? O ARG A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1003 ? 7 'BINDING SITE FOR RESIDUE MG A 1003' AC2 Software A PO4 209 ? 11 'BINDING SITE FOR RESIDUE PO4 A 209' AC3 Software A PO4 210 ? 8 'BINDING SITE FOR RESIDUE PO4 A 210' AC4 Software A PEG 211 ? 9 'BINDING SITE FOR RESIDUE PEG A 211' AC5 Software A NA 212 ? 5 'BINDING SITE FOR RESIDUE NA A 212' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASP A 11 ? ASP A 11 . ? 1_555 ? 2 AC1 7 ASP A 13 ? ASP A 13 . ? 1_555 ? 3 AC1 7 TYR A 45 ? TYR A 45 . ? 1_555 ? 4 AC1 7 ASP A 146 ? ASP A 146 . ? 1_555 ? 5 AC1 7 PO4 B . ? PO4 A 209 . ? 1_555 ? 6 AC1 7 HOH G . ? HOH A 271 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH A 377 . ? 1_555 ? 8 AC2 11 ASP A 11 ? ASP A 11 . ? 1_555 ? 9 AC2 11 MSE A 12 ? MSE A 12 . ? 1_555 ? 10 AC2 11 ASP A 13 ? ASP A 13 . ? 1_555 ? 11 AC2 11 TYR A 45 ? TYR A 45 . ? 1_555 ? 12 AC2 11 THR A 100 ? THR A 100 . ? 1_555 ? 13 AC2 11 SER A 101 ? SER A 101 . ? 1_555 ? 14 AC2 11 HIS A 103 ? HIS A 103 . ? 1_555 ? 15 AC2 11 LYS A 113 ? LYS A 113 . ? 1_555 ? 16 AC2 11 LYS A 135 ? LYS A 135 . ? 1_555 ? 17 AC2 11 HOH G . ? HOH A 388 . ? 1_555 ? 18 AC2 11 MG C . ? MG A 1003 . ? 1_555 ? 19 AC3 8 GLU A 67 ? GLU A 67 . ? 1_555 ? 20 AC3 8 MSE A 105 ? MSE A 105 . ? 1_555 ? 21 AC3 8 TYR A 108 ? TYR A 108 . ? 1_555 ? 22 AC3 8 HIS A 182 ? HIS A 182 . ? 4_455 ? 23 AC3 8 SER A 183 ? SER A 183 . ? 4_455 ? 24 AC3 8 ASP A 186 ? ASP A 186 . ? 4_455 ? 25 AC3 8 PEG E . ? PEG A 211 . ? 8_555 ? 26 AC3 8 NA F . ? NA A 212 . ? 1_555 ? 27 AC4 9 LYS A 104 ? LYS A 104 . ? 8_555 ? 28 AC4 9 MSE A 105 ? MSE A 105 . ? 8_555 ? 29 AC4 9 PHE A 106 ? PHE A 106 . ? 8_555 ? 30 AC4 9 GLU A 118 ? GLU A 118 . ? 1_555 ? 31 AC4 9 PRO A 123 ? PRO A 123 . ? 1_555 ? 32 AC4 9 LEU A 126 ? LEU A 126 . ? 1_555 ? 33 AC4 9 HIS A 182 ? HIS A 182 . ? 6_455 ? 34 AC4 9 PO4 D . ? PO4 A 210 . ? 8_555 ? 35 AC4 9 HOH G . ? HOH A 321 . ? 6_455 ? 36 AC5 5 MSE A 105 ? MSE A 105 . ? 1_555 ? 37 AC5 5 LYS A 107 ? LYS A 107 . ? 1_555 ? 38 AC5 5 TYR A 108 ? TYR A 108 . ? 1_555 ? 39 AC5 5 CYS A 109 ? CYS A 109 . ? 1_555 ? 40 AC5 5 PO4 D . ? PO4 A 210 . ? 1_555 ? # _pdbx_entry_details.entry_id 3U13 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 12 ? ? -101.46 -60.79 2 1 HIS A 103 ? ? 64.43 -158.90 3 1 LYS A 104 ? ? -96.96 42.47 4 1 PRO A 177 ? ? -101.27 40.16 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 12 A MSE 12 ? MET SELENOMETHIONINE 2 A MSE 88 A MSE 88 ? MET SELENOMETHIONINE 3 A MSE 105 A MSE 105 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 338 ? G HOH . 2 1 A HOH 441 ? G HOH . # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -2.7591 _pdbx_refine_tls.origin_y 20.2865 _pdbx_refine_tls.origin_z 18.8419 _pdbx_refine_tls.T[1][1] 0.1015 _pdbx_refine_tls.T[2][2] 0.1158 _pdbx_refine_tls.T[3][3] 0.0887 _pdbx_refine_tls.T[1][2] -0.0142 _pdbx_refine_tls.T[1][3] 0.0298 _pdbx_refine_tls.T[2][3] -0.0029 _pdbx_refine_tls.L[1][1] 2.2193 _pdbx_refine_tls.L[2][2] 1.6243 _pdbx_refine_tls.L[3][3] 1.1478 _pdbx_refine_tls.L[1][2] -0.1720 _pdbx_refine_tls.L[1][3] -0.4426 _pdbx_refine_tls.L[2][3] -0.3777 _pdbx_refine_tls.S[1][1] 0.0379 _pdbx_refine_tls.S[1][2] -0.0624 _pdbx_refine_tls.S[1][3] 0.0949 _pdbx_refine_tls.S[2][1] 0.0156 _pdbx_refine_tls.S[2][2] -0.0130 _pdbx_refine_tls.S[2][3] -0.1523 _pdbx_refine_tls.S[3][1] -0.1052 _pdbx_refine_tls.S[3][2] 0.0698 _pdbx_refine_tls.S[3][3] -0.0227 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A CYS 198 ? A CYS 198 4 1 Y 1 A GLY 199 ? A GLY 199 5 1 Y 1 A SER 200 ? A SER 200 6 1 Y 1 A LEU 201 ? A LEU 201 7 1 Y 1 A GLU 202 ? A GLU 202 8 1 Y 1 A HIS 203 ? A HIS 203 9 1 Y 1 A HIS 204 ? A HIS 204 10 1 Y 1 A HIS 205 ? A HIS 205 11 1 Y 1 A HIS 206 ? A HIS 206 12 1 Y 1 A HIS 207 ? A HIS 207 13 1 Y 1 A HIS 208 ? A HIS 208 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MG MG MG N N 230 MSE N N N N 231 MSE CA C N S 232 MSE C C N N 233 MSE O O N N 234 MSE OXT O N N 235 MSE CB C N N 236 MSE CG C N N 237 MSE SE SE N N 238 MSE CE C N N 239 MSE H H N N 240 MSE H2 H N N 241 MSE HA H N N 242 MSE HXT H N N 243 MSE HB2 H N N 244 MSE HB3 H N N 245 MSE HG2 H N N 246 MSE HG3 H N N 247 MSE HE1 H N N 248 MSE HE2 H N N 249 MSE HE3 H N N 250 NA NA NA N N 251 PEG C1 C N N 252 PEG O1 O N N 253 PEG C2 C N N 254 PEG O2 O N N 255 PEG C3 C N N 256 PEG C4 C N N 257 PEG O4 O N N 258 PEG H11 H N N 259 PEG H12 H N N 260 PEG HO1 H N N 261 PEG H21 H N N 262 PEG H22 H N N 263 PEG H31 H N N 264 PEG H32 H N N 265 PEG H41 H N N 266 PEG H42 H N N 267 PEG HO4 H N N 268 PHE N N N N 269 PHE CA C N S 270 PHE C C N N 271 PHE O O N N 272 PHE CB C N N 273 PHE CG C Y N 274 PHE CD1 C Y N 275 PHE CD2 C Y N 276 PHE CE1 C Y N 277 PHE CE2 C Y N 278 PHE CZ C Y N 279 PHE OXT O N N 280 PHE H H N N 281 PHE H2 H N N 282 PHE HA H N N 283 PHE HB2 H N N 284 PHE HB3 H N N 285 PHE HD1 H N N 286 PHE HD2 H N N 287 PHE HE1 H N N 288 PHE HE2 H N N 289 PHE HZ H N N 290 PHE HXT H N N 291 PO4 P P N N 292 PO4 O1 O N N 293 PO4 O2 O N N 294 PO4 O3 O N N 295 PO4 O4 O N N 296 PRO N N N N 297 PRO CA C N S 298 PRO C C N N 299 PRO O O N N 300 PRO CB C N N 301 PRO CG C N N 302 PRO CD C N N 303 PRO OXT O N N 304 PRO H H N N 305 PRO HA H N N 306 PRO HB2 H N N 307 PRO HB3 H N N 308 PRO HG2 H N N 309 PRO HG3 H N N 310 PRO HD2 H N N 311 PRO HD3 H N N 312 PRO HXT H N N 313 SER N N N N 314 SER CA C N S 315 SER C C N N 316 SER O O N N 317 SER CB C N N 318 SER OG O N N 319 SER OXT O N N 320 SER H H N N 321 SER H2 H N N 322 SER HA H N N 323 SER HB2 H N N 324 SER HB3 H N N 325 SER HG H N N 326 SER HXT H N N 327 THR N N N N 328 THR CA C N S 329 THR C C N N 330 THR O O N N 331 THR CB C N R 332 THR OG1 O N N 333 THR CG2 C N N 334 THR OXT O N N 335 THR H H N N 336 THR H2 H N N 337 THR HA H N N 338 THR HB H N N 339 THR HG1 H N N 340 THR HG21 H N N 341 THR HG22 H N N 342 THR HG23 H N N 343 THR HXT H N N 344 TRP N N N N 345 TRP CA C N S 346 TRP C C N N 347 TRP O O N N 348 TRP CB C N N 349 TRP CG C Y N 350 TRP CD1 C Y N 351 TRP CD2 C Y N 352 TRP NE1 N Y N 353 TRP CE2 C Y N 354 TRP CE3 C Y N 355 TRP CZ2 C Y N 356 TRP CZ3 C Y N 357 TRP CH2 C Y N 358 TRP OXT O N N 359 TRP H H N N 360 TRP H2 H N N 361 TRP HA H N N 362 TRP HB2 H N N 363 TRP HB3 H N N 364 TRP HD1 H N N 365 TRP HE1 H N N 366 TRP HE3 H N N 367 TRP HZ2 H N N 368 TRP HZ3 H N N 369 TRP HH2 H N N 370 TRP HXT H N N 371 TYR N N N N 372 TYR CA C N S 373 TYR C C N N 374 TYR O O N N 375 TYR CB C N N 376 TYR CG C Y N 377 TYR CD1 C Y N 378 TYR CD2 C Y N 379 TYR CE1 C Y N 380 TYR CE2 C Y N 381 TYR CZ C Y N 382 TYR OH O N N 383 TYR OXT O N N 384 TYR H H N N 385 TYR H2 H N N 386 TYR HA H N N 387 TYR HB2 H N N 388 TYR HB3 H N N 389 TYR HD1 H N N 390 TYR HD2 H N N 391 TYR HE1 H N N 392 TYR HE2 H N N 393 TYR HH H N N 394 TYR HXT H N N 395 VAL N N N N 396 VAL CA C N S 397 VAL C C N N 398 VAL O O N N 399 VAL CB C N N 400 VAL CG1 C N N 401 VAL CG2 C N N 402 VAL OXT O N N 403 VAL H H N N 404 VAL H2 H N N 405 VAL HA H N N 406 VAL HB H N N 407 VAL HG11 H N N 408 VAL HG12 H N N 409 VAL HG13 H N N 410 VAL HG21 H N N 411 VAL HG22 H N N 412 VAL HG23 H N N 413 VAL HXT H N N 414 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MSE N CA sing N N 218 MSE N H sing N N 219 MSE N H2 sing N N 220 MSE CA C sing N N 221 MSE CA CB sing N N 222 MSE CA HA sing N N 223 MSE C O doub N N 224 MSE C OXT sing N N 225 MSE OXT HXT sing N N 226 MSE CB CG sing N N 227 MSE CB HB2 sing N N 228 MSE CB HB3 sing N N 229 MSE CG SE sing N N 230 MSE CG HG2 sing N N 231 MSE CG HG3 sing N N 232 MSE SE CE sing N N 233 MSE CE HE1 sing N N 234 MSE CE HE2 sing N N 235 MSE CE HE3 sing N N 236 PEG C1 O1 sing N N 237 PEG C1 C2 sing N N 238 PEG C1 H11 sing N N 239 PEG C1 H12 sing N N 240 PEG O1 HO1 sing N N 241 PEG C2 O2 sing N N 242 PEG C2 H21 sing N N 243 PEG C2 H22 sing N N 244 PEG O2 C3 sing N N 245 PEG C3 C4 sing N N 246 PEG C3 H31 sing N N 247 PEG C3 H32 sing N N 248 PEG C4 O4 sing N N 249 PEG C4 H41 sing N N 250 PEG C4 H42 sing N N 251 PEG O4 HO4 sing N N 252 PHE N CA sing N N 253 PHE N H sing N N 254 PHE N H2 sing N N 255 PHE CA C sing N N 256 PHE CA CB sing N N 257 PHE CA HA sing N N 258 PHE C O doub N N 259 PHE C OXT sing N N 260 PHE CB CG sing N N 261 PHE CB HB2 sing N N 262 PHE CB HB3 sing N N 263 PHE CG CD1 doub Y N 264 PHE CG CD2 sing Y N 265 PHE CD1 CE1 sing Y N 266 PHE CD1 HD1 sing N N 267 PHE CD2 CE2 doub Y N 268 PHE CD2 HD2 sing N N 269 PHE CE1 CZ doub Y N 270 PHE CE1 HE1 sing N N 271 PHE CE2 CZ sing Y N 272 PHE CE2 HE2 sing N N 273 PHE CZ HZ sing N N 274 PHE OXT HXT sing N N 275 PO4 P O1 doub N N 276 PO4 P O2 sing N N 277 PO4 P O3 sing N N 278 PO4 P O4 sing N N 279 PRO N CA sing N N 280 PRO N CD sing N N 281 PRO N H sing N N 282 PRO CA C sing N N 283 PRO CA CB sing N N 284 PRO CA HA sing N N 285 PRO C O doub N N 286 PRO C OXT sing N N 287 PRO CB CG sing N N 288 PRO CB HB2 sing N N 289 PRO CB HB3 sing N N 290 PRO CG CD sing N N 291 PRO CG HG2 sing N N 292 PRO CG HG3 sing N N 293 PRO CD HD2 sing N N 294 PRO CD HD3 sing N N 295 PRO OXT HXT sing N N 296 SER N CA sing N N 297 SER N H sing N N 298 SER N H2 sing N N 299 SER CA C sing N N 300 SER CA CB sing N N 301 SER CA HA sing N N 302 SER C O doub N N 303 SER C OXT sing N N 304 SER CB OG sing N N 305 SER CB HB2 sing N N 306 SER CB HB3 sing N N 307 SER OG HG sing N N 308 SER OXT HXT sing N N 309 THR N CA sing N N 310 THR N H sing N N 311 THR N H2 sing N N 312 THR CA C sing N N 313 THR CA CB sing N N 314 THR CA HA sing N N 315 THR C O doub N N 316 THR C OXT sing N N 317 THR CB OG1 sing N N 318 THR CB CG2 sing N N 319 THR CB HB sing N N 320 THR OG1 HG1 sing N N 321 THR CG2 HG21 sing N N 322 THR CG2 HG22 sing N N 323 THR CG2 HG23 sing N N 324 THR OXT HXT sing N N 325 TRP N CA sing N N 326 TRP N H sing N N 327 TRP N H2 sing N N 328 TRP CA C sing N N 329 TRP CA CB sing N N 330 TRP CA HA sing N N 331 TRP C O doub N N 332 TRP C OXT sing N N 333 TRP CB CG sing N N 334 TRP CB HB2 sing N N 335 TRP CB HB3 sing N N 336 TRP CG CD1 doub Y N 337 TRP CG CD2 sing Y N 338 TRP CD1 NE1 sing Y N 339 TRP CD1 HD1 sing N N 340 TRP CD2 CE2 doub Y N 341 TRP CD2 CE3 sing Y N 342 TRP NE1 CE2 sing Y N 343 TRP NE1 HE1 sing N N 344 TRP CE2 CZ2 sing Y N 345 TRP CE3 CZ3 doub Y N 346 TRP CE3 HE3 sing N N 347 TRP CZ2 CH2 doub Y N 348 TRP CZ2 HZ2 sing N N 349 TRP CZ3 CH2 sing Y N 350 TRP CZ3 HZ3 sing N N 351 TRP CH2 HH2 sing N N 352 TRP OXT HXT sing N N 353 TYR N CA sing N N 354 TYR N H sing N N 355 TYR N H2 sing N N 356 TYR CA C sing N N 357 TYR CA CB sing N N 358 TYR CA HA sing N N 359 TYR C O doub N N 360 TYR C OXT sing N N 361 TYR CB CG sing N N 362 TYR CB HB2 sing N N 363 TYR CB HB3 sing N N 364 TYR CG CD1 doub Y N 365 TYR CG CD2 sing Y N 366 TYR CD1 CE1 sing Y N 367 TYR CD1 HD1 sing N N 368 TYR CD2 CE2 doub Y N 369 TYR CD2 HD2 sing N N 370 TYR CE1 CZ doub Y N 371 TYR CE1 HE1 sing N N 372 TYR CE2 CZ sing Y N 373 TYR CE2 HE2 sing N N 374 TYR CZ OH sing N N 375 TYR OH HH sing N N 376 TYR OXT HXT sing N N 377 VAL N CA sing N N 378 VAL N H sing N N 379 VAL N H2 sing N N 380 VAL CA C sing N N 381 VAL CA CB sing N N 382 VAL CA HA sing N N 383 VAL C O doub N N 384 VAL C OXT sing N N 385 VAL CB CG1 sing N N 386 VAL CB CG2 sing N N 387 VAL CB HB sing N N 388 VAL CG1 HG11 sing N N 389 VAL CG1 HG12 sing N N 390 VAL CG1 HG13 sing N N 391 VAL CG2 HG21 sing N N 392 VAL CG2 HG22 sing N N 393 VAL CG2 HG23 sing N N 394 VAL OXT HXT sing N N 395 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Q92 _pdbx_initial_refinement_model.details 'pdb entry 1Q92' # _atom_sites.entry_id 3U13 _atom_sites.fract_transf_matrix[1][1] 0.013617 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013617 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009516 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S SE # loop_