HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-SEP-11 3U1D TITLE THE STRUCTURE OF A PROTEIN WITH A GNTR SUPERFAMILY WINGED-HELIX-TURN- TITLE 2 HELIX DOMAIN FROM HALOMICROBIUM MUKOHATAEI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOMICROBIUM MUKOHATAEI; SOURCE 3 ORGANISM_TAXID: 485914; SOURCE 4 STRAIN: DSM 12286; SOURCE 5 GENE: HMUK_3159; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG48 KEYWDS GNTR-SUPERFAMILY, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, MCSG, WINGED-HELIX-TURN-HELIX, WHTH, KEYWDS 3 PUTATIVE DNA-BINDING, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,L.BIGELOW,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3U1D 1 REMARK REVDAT 1 07-DEC-11 3U1D 0 JRNL AUTH M.E.CUFF,L.BIGELOW,J.BEARDEN,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PROTEIN WITH A GNTR SUPERFAMILY JRNL TITL 2 WINGED-HELIX-TURN-HELIX DOMAIN FROM HALOMICROBIUM JRNL TITL 3 MUKOHATAEI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1745 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.931 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2470 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1730 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3349 ; 1.573 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4164 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 5.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;30.263 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;13.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.649 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2784 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 517 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1432 21.1760 50.2135 REMARK 3 T TENSOR REMARK 3 T11: 0.0541 T22: 0.0756 REMARK 3 T33: 0.0701 T12: 0.0005 REMARK 3 T13: 0.0097 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 1.4293 L22: 1.8958 REMARK 3 L33: 1.4368 L12: 1.1965 REMARK 3 L13: -0.8663 L23: -1.2457 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.1303 S13: -0.1118 REMARK 3 S21: 0.1534 S22: -0.1216 S23: -0.1142 REMARK 3 S31: -0.0005 S32: 0.0647 S33: 0.0891 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5132 50.0111 31.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.0289 T22: 0.0840 REMARK 3 T33: 0.1029 T12: -0.0158 REMARK 3 T13: -0.0075 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 0.7661 L22: 1.4790 REMARK 3 L33: 1.7144 L12: 0.1676 REMARK 3 L13: -0.4074 L23: -0.6557 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: 0.0018 S13: 0.1595 REMARK 3 S21: 0.1577 S22: -0.0372 S23: 0.0093 REMARK 3 S31: -0.1675 S32: 0.0440 S33: -0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34958 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.86900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.1, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS:HCL PH 8.5, 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.17700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.60700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.60700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 163.76550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.60700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.60700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.58850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.60700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.60700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 163.76550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.60700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.60700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.58850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.17700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: LIKELY THE AB DIMER IN THE AU. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 115 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 56.78 39.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 155 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC101222 RELATED DB: TARGETDB DBREF 3U1D A 1 148 UNP C7P2E9 C7P2E9_HALMD 1 148 DBREF 3U1D B 1 148 UNP C7P2E9 C7P2E9_HALMD 1 148 SEQADV 3U1D SER A -2 UNP C7P2E9 EXPRESSION TAG SEQADV 3U1D ASN A -1 UNP C7P2E9 EXPRESSION TAG SEQADV 3U1D ALA A 0 UNP C7P2E9 EXPRESSION TAG SEQADV 3U1D SER B -2 UNP C7P2E9 EXPRESSION TAG SEQADV 3U1D ASN B -1 UNP C7P2E9 EXPRESSION TAG SEQADV 3U1D ALA B 0 UNP C7P2E9 EXPRESSION TAG SEQRES 1 A 151 SER ASN ALA MSE ALA THR GLN ASP ARG GLY GLU ARG PRO SEQRES 2 A 151 ASN GLY PHE GLY ASP GLU LEU GLU ARG ARG ARG PHE VAL SEQRES 3 A 151 LEU HIS GLU THR ARG LEU ASP VAL LEU HIS GLN ILE LEU SEQRES 4 A 151 ALA GLN PRO ASP GLY VAL LEU SER VAL GLU GLU LEU LEU SEQRES 5 A 151 TYR ARG ASN PRO ASP GLU THR GLU ALA ASN LEU ARG TYR SEQRES 6 A 151 HIS VAL ASP GLU LEU VAL ASP ARG GLY ILE VAL GLU LYS SEQRES 7 A 151 ILE PRO VAL PRO ARG ALA LYS SER VAL ASP ASP PRO PRO SEQRES 8 A 151 THR THR PHE TYR ALA VAL THR GLY GLU GLY ILE ALA LEU SEQRES 9 A 151 LEU ARG ALA VAL SER MSE TYR GLU GLU ALA ALA VAL TRP SEQRES 10 A 151 ARG SER VAL TYR GLU GLN MSE GLU ARG THR ASP ARG ILE SEQRES 11 A 151 GLU ALA ILE GLU ASN LEU GLU THR ARG PRO ASP VAL ASP SEQRES 12 A 151 TYR GLU SER ARG GLY ALA THR ALA SEQRES 1 B 151 SER ASN ALA MSE ALA THR GLN ASP ARG GLY GLU ARG PRO SEQRES 2 B 151 ASN GLY PHE GLY ASP GLU LEU GLU ARG ARG ARG PHE VAL SEQRES 3 B 151 LEU HIS GLU THR ARG LEU ASP VAL LEU HIS GLN ILE LEU SEQRES 4 B 151 ALA GLN PRO ASP GLY VAL LEU SER VAL GLU GLU LEU LEU SEQRES 5 B 151 TYR ARG ASN PRO ASP GLU THR GLU ALA ASN LEU ARG TYR SEQRES 6 B 151 HIS VAL ASP GLU LEU VAL ASP ARG GLY ILE VAL GLU LYS SEQRES 7 B 151 ILE PRO VAL PRO ARG ALA LYS SER VAL ASP ASP PRO PRO SEQRES 8 B 151 THR THR PHE TYR ALA VAL THR GLY GLU GLY ILE ALA LEU SEQRES 9 B 151 LEU ARG ALA VAL SER MSE TYR GLU GLU ALA ALA VAL TRP SEQRES 10 B 151 ARG SER VAL TYR GLU GLN MSE GLU ARG THR ASP ARG ILE SEQRES 11 B 151 GLU ALA ILE GLU ASN LEU GLU THR ARG PRO ASP VAL ASP SEQRES 12 B 151 TYR GLU SER ARG GLY ALA THR ALA MODRES 3U1D MSE A 1 MET SELENOMETHIONINE MODRES 3U1D MSE A 107 MET SELENOMETHIONINE MODRES 3U1D MSE A 121 MET SELENOMETHIONINE MODRES 3U1D MSE B 107 MET SELENOMETHIONINE MODRES 3U1D MSE B 121 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 107 8 HET MSE A 121 8 HET MSE B 107 8 HET MSE B 121 8 HET CL A 149 1 HET CL A 150 1 HET CL A 151 1 HET PEG A 152 7 HET EDO B 149 4 HET CL B 150 1 HET CL B 151 1 HET TRS B 152 8 HET TRS B 153 8 HET EDO B 154 4 HET EDO B 155 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 CL 5(CL 1-) FORMUL 6 PEG C4 H10 O3 FORMUL 7 EDO 3(C2 H6 O2) FORMUL 10 TRS 2(C4 H12 N O3 1+) FORMUL 14 HOH *289(H2 O) HELIX 1 1 GLY A 12 LEU A 24 1 13 HELIX 2 2 HIS A 25 GLN A 38 1 14 HELIX 3 3 SER A 44 ASN A 52 1 9 HELIX 4 4 THR A 56 ARG A 70 1 15 HELIX 5 5 THR A 95 VAL A 105 1 11 HELIX 6 6 GLU A 109 TRP A 114 1 6 HELIX 7 7 TRP A 114 MSE A 121 1 8 HELIX 8 8 THR A 124 ASN A 132 1 9 HELIX 9 9 TYR A 141 GLY A 145 5 5 HELIX 10 10 ASN B 11 LEU B 24 1 14 HELIX 11 11 HIS B 25 GLN B 38 1 14 HELIX 12 12 SER B 44 ASN B 52 1 9 HELIX 13 13 THR B 56 ARG B 70 1 15 HELIX 14 14 THR B 95 VAL B 105 1 11 HELIX 15 15 GLU B 110 GLU B 119 1 10 HELIX 16 16 THR B 124 ASN B 132 1 9 HELIX 17 17 ASP B 140 THR B 147 1 8 SHEET 1 A 2 VAL A 73 PRO A 77 0 SHEET 2 A 2 THR A 90 VAL A 94 -1 O PHE A 91 N ILE A 76 SHEET 1 B 2 VAL B 73 PRO B 77 0 SHEET 2 B 2 THR B 90 VAL B 94 -1 O PHE B 91 N ILE B 76 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C SER A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N TYR A 108 1555 1555 1.33 LINK C GLN A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N GLU A 122 1555 1555 1.33 LINK C SER B 106 N MSE B 107 1555 1555 1.34 LINK C MSE B 107 N TYR B 108 1555 1555 1.32 LINK C GLN B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N GLU B 122 1555 1555 1.33 SITE 1 AC1 4 THR A 3 GLN A 4 HOH B 197 HOH B 200 SITE 1 AC2 3 GLU A 46 HOH A 158 HOH A 275 SITE 1 AC3 4 SER A 106 MSE A 107 TYR A 108 GLU A 109 SITE 1 AC4 7 GLY A 7 GLU A 8 ARG A 9 ASP B 30 SITE 2 AC4 7 GLN B 34 TRP B 114 TYR B 118 SITE 1 AC5 2 GLU B 46 HOH B 284 SITE 1 AC6 4 SER B 106 TYR B 108 GLU B 109 HOH B 192 SITE 1 AC7 7 LEU A 36 ALA A 37 GLN A 38 PRO A 39 SITE 2 AC7 7 ARG A 115 TYR A 141 HOH A 180 SITE 1 AC8 3 GLU B 66 ASP B 69 HOH B 245 SITE 1 AC9 6 ASP B 40 GLU B 134 ARG B 136 PRO B 137 SITE 2 AC9 6 ASP B 138 HOH B 279 SITE 1 BC1 6 ARG B 21 GLN B 120 MSE B 121 GLU B 122 SITE 2 BC1 6 HOH B 202 HOH B 249 SITE 1 BC2 7 ASN A 59 TYR A 62 HOH A 215 ARG B 126 SITE 2 BC2 7 ALA B 129 HOH B 235 HOH B 258 CRYST1 57.214 57.214 218.354 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004580 0.00000 HETATM 1 N MSE A 1 18.506 27.312 32.051 1.00 46.13 N ANISOU 1 N MSE A 1 5450 5826 6249 76 824 770 N HETATM 2 CA MSE A 1 17.993 28.120 30.877 1.00 43.74 C ANISOU 2 CA MSE A 1 5224 5573 5822 -11 803 718 C HETATM 3 C MSE A 1 18.937 29.303 30.606 1.00 41.07 C ANISOU 3 C MSE A 1 4809 5273 5520 -6 767 785 C HETATM 4 O MSE A 1 19.323 29.996 31.531 1.00 44.63 O ANISOU 4 O MSE A 1 5171 5752 6033 26 662 852 O HETATM 5 CB MSE A 1 16.558 28.605 31.163 1.00 44.06 C ANISOU 5 CB MSE A 1 5306 5672 5762 -63 661 684 C HETATM 6 CG MSE A 1 15.876 29.370 30.007 1.00 46.58 C ANISOU 6 CG MSE A 1 5688 6050 5958 -158 623 660 C HETATM 7 SE MSE A 1 13.952 29.791 30.356 0.75 45.49 SE ANISOU 7 SE MSE A 1 5576 5979 5727 -213 466 653 SE HETATM 8 CE MSE A 1 14.134 30.921 31.956 1.00 45.94 C ANISOU 8 CE MSE A 1 5525 6038 5891 -121 341 715 C