HEADER HYDROLASE/HYDROLASE INHIBITOR 30-SEP-11 3U1J TITLE APROTININ BOUND TO DENGUE VIRUS PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1393-1438; COMPND 5 SYNONYM: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT, NON-STRUCTURAL COMPND 6 PROTEIN 2B; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SERINE PROTEASE NS3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 1474-1655; COMPND 12 SYNONYM: FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT, NON-STRUCTURAL COMPND 13 PROTEIN 3; COMPND 14 EC: 3.4.21.91, 3.6.1.15, 3.6.4.13; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: PANCREATIC TRYPSIN INHIBITOR; COMPND 18 CHAIN: E; COMPND 19 FRAGMENT: UNP RESIDUES 36-93; COMPND 20 SYNONYM: APROTININ, BASIC PROTEASE INHIBITOR, BPI, BPTI SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 3 ORGANISM_COMMON: DENV-3; SOURCE 4 ORGANISM_TAXID: 408693; SOURCE 5 STRAIN: SINGAPORE/8120/1995; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 13 ORGANISM_COMMON: DENV-3; SOURCE 14 ORGANISM_TAXID: 408693; SOURCE 15 STRAIN: SINGAPORE/8120/1995; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX6P1; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 23 ORGANISM_COMMON: BOVINE; SOURCE 24 ORGANISM_TAXID: 9913 KEYWDS SERINE PROTEASE, BOVINE PANCREATIC TRYPSIN INHIBITOR, ER MEMBRANE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.G.NOBLE REVDAT 3 01-NOV-23 3U1J 1 SEQADV REVDAT 2 05-JUN-13 3U1J 1 JRNL REVDAT 1 09-NOV-11 3U1J 0 JRNL AUTH C.G.NOBLE,C.C.SEH,A.T.CHAO,P.Y.SHI JRNL TITL LIGAND-BOUND STRUCTURES OF THE DENGUE VIRUS PROTEASE REVEAL JRNL TITL 2 THE ACTIVE CONFORMATION JRNL REF J.VIROL. V. 86 438 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22031935 JRNL DOI 10.1128/JVI.06225-11 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1856 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.38000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1937 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2629 ; 1.263 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 6.076 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;29.086 ;24.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;16.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1487 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1207 ; 0.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1943 ; 1.370 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 730 ; 1.948 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 680 ; 3.388 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1894 -35.9263 -18.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.0847 REMARK 3 T33: 0.0900 T12: 0.0398 REMARK 3 T13: -0.0108 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.4224 L22: 3.2029 REMARK 3 L33: 5.5891 L12: 1.6665 REMARK 3 L13: -2.8256 L23: -2.7968 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: 0.2081 S13: -0.5347 REMARK 3 S21: -0.0785 S22: -0.2758 S23: -0.3397 REMARK 3 S31: 0.1609 S32: 0.3120 S33: 0.2174 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4181 -29.4386 -12.1281 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0491 REMARK 3 T33: 0.0222 T12: 0.0254 REMARK 3 T13: -0.0074 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.7698 L22: 0.2506 REMARK 3 L33: 1.0470 L12: -0.2567 REMARK 3 L13: -0.3534 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0146 S13: -0.0340 REMARK 3 S21: -0.0051 S22: -0.0199 S23: -0.0361 REMARK 3 S31: -0.0391 S32: 0.0576 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 56 REMARK 3 ORIGIN FOR THE GROUP (A): -30.7126 -35.4404 -21.3030 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.1549 REMARK 3 T33: 0.0949 T12: 0.0579 REMARK 3 T13: -0.0703 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 6.1616 L22: 2.7836 REMARK 3 L33: 2.0048 L12: 2.9814 REMARK 3 L13: 2.4210 L23: 0.4123 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: -0.0965 S13: 0.1089 REMARK 3 S21: -0.1799 S22: -0.0313 S23: 0.3580 REMARK 3 S31: -0.0093 S32: -0.3280 S33: -0.0177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2IJO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 30% PEG 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 217 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 261 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 PRO A 46 REMARK 465 LEU A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 VAL A 70 REMARK 465 SER A 71 REMARK 465 HIS A 72 REMARK 465 ASN A 73 REMARK 465 LEU A 74 REMARK 465 MET A 75 REMARK 465 ILE A 76 REMARK 465 THR A 77 REMARK 465 VAL A 78 REMARK 465 ASP A 79 REMARK 465 ASP A 80 REMARK 465 ASP A 81 REMARK 465 GLY A 82 REMARK 465 THR A 83 REMARK 465 MET A 84 REMARK 465 ARG A 85 REMARK 465 ILE A 86 REMARK 465 LYS A 87 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 GLU A 90 REMARK 465 THR A 91 REMARK 465 GLU A 92 REMARK 465 ASN A 93 REMARK 465 ILE A 94 REMARK 465 LEU A 95 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 PRO B 172 REMARK 465 ASP B 173 REMARK 465 GLY B 174 REMARK 465 PRO B 175 REMARK 465 THR B 176 REMARK 465 PRO B 177 REMARK 465 GLU B 178 REMARK 465 LEU B 179 REMARK 465 GLU B 180 REMARK 465 GLU B 181 REMARK 465 GLU B 182 REMARK 465 GLY E 57 REMARK 465 ALA E 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 6 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 31 -7.31 79.14 REMARK 500 THR B 120 -73.83 -65.29 REMARK 500 ASN E 44 107.50 -166.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U1I RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATED THE SEQUENCE CONFLICT OF I115T (UNP RESIDUE NUMBER REMARK 999 1588) WAS A NATURALLY OCCURRING DIFFERENCE. DBREF 3U1J A 50 95 UNP Q5UB51 POLG_DEN3I 1393 1438 DBREF 3U1J B 1 182 UNP Q5UB51 POLG_DEN3I 1474 1655 DBREF 3U1J E 1 58 UNP P00974 BPT1_BOVIN 36 93 SEQADV 3U1J GLY A 45 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J PRO A 46 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J LEU A 47 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY A 48 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J SER A 49 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B -8 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B -7 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B -6 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B -5 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J SER B -4 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B -3 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B -2 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B -1 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J GLY B 0 UNP Q5UB51 EXPRESSION TAG SEQADV 3U1J THR B 115 UNP Q5UB51 ILE 1588 SEE REMARK 999 SEQRES 1 A 51 GLY PRO LEU GLY SER ASP LEU THR VAL GLU LYS ALA ALA SEQRES 2 A 51 ASP VAL THR TRP GLU GLU GLU ALA GLU GLN THR GLY VAL SEQRES 3 A 51 SER HIS ASN LEU MET ILE THR VAL ASP ASP ASP GLY THR SEQRES 4 A 51 MET ARG ILE LYS ASP ASP GLU THR GLU ASN ILE LEU SEQRES 1 B 191 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY VAL LEU SEQRES 2 B 191 TRP ASP VAL PRO SER PRO PRO GLU THR GLN LYS ALA GLU SEQRES 3 B 191 LEU GLU GLU GLY VAL TYR ARG ILE LYS GLN GLN GLY ILE SEQRES 4 B 191 PHE GLY LYS THR GLN VAL GLY VAL GLY VAL GLN LYS GLU SEQRES 5 B 191 GLY VAL PHE HIS THR MET TRP HIS VAL THR ARG GLY ALA SEQRES 6 B 191 VAL LEU THR HIS ASN GLY LYS ARG LEU GLU PRO ASN TRP SEQRES 7 B 191 ALA SER VAL LYS LYS ASP LEU ILE SER TYR GLY GLY GLY SEQRES 8 B 191 TRP ARG LEU SER ALA GLN TRP GLN LYS GLY GLU GLU VAL SEQRES 9 B 191 GLN VAL ILE ALA VAL GLU PRO GLY LYS ASN PRO LYS ASN SEQRES 10 B 191 PHE GLN THR MET PRO GLY THR PHE GLN THR THR THR GLY SEQRES 11 B 191 GLU ILE GLY ALA ILE ALA LEU ASP PHE LYS PRO GLY THR SEQRES 12 B 191 SER GLY SER PRO ILE ILE ASN ARG GLU GLY LYS VAL VAL SEQRES 13 B 191 GLY LEU TYR GLY ASN GLY VAL VAL THR LYS ASN GLY GLY SEQRES 14 B 191 TYR VAL SER GLY ILE ALA GLN THR ASN ALA GLU PRO ASP SEQRES 15 B 191 GLY PRO THR PRO GLU LEU GLU GLU GLU SEQRES 1 E 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 E 58 CYS LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 E 58 ALA GLY LEU CYS GLN THR PHE VAL TYR GLY GLY CYS ARG SEQRES 4 E 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP CYS MET SEQRES 5 E 58 ARG THR CYS GLY GLY ALA FORMUL 4 HOH *193(H2 O) HELIX 1 1 TRP B 50 ARG B 54 1 5 HELIX 2 2 PRO E 2 GLU E 7 5 6 HELIX 3 3 SER E 47 GLY E 56 1 10 SHEET 1 A 6 LEU A 51 ALA A 57 0 SHEET 2 A 6 GLY B 21 GLY B 29 -1 O VAL B 22 N ALA A 57 SHEET 3 A 6 GLY B 32 LYS B 42 -1 O GLN B 41 N GLY B 21 SHEET 4 A 6 VAL B 45 MET B 49 -1 O HIS B 47 N VAL B 40 SHEET 5 A 6 LEU B 76 TYR B 79 -1 O TYR B 79 N PHE B 46 SHEET 6 A 6 PRO B 67 SER B 71 -1 N TRP B 69 O SER B 78 SHEET 1 B 5 GLU A 66 GLY A 69 0 SHEET 2 B 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 B 5 VAL B 95 ALA B 99 -1 N VAL B 97 O PHE B 109 SHEET 4 B 5 PRO B 138 ILE B 140 -1 O ILE B 140 N GLN B 96 SHEET 5 B 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 C 2 LEU B 58 HIS B 60 0 SHEET 2 C 2 LYS B 63 LEU B 65 -1 O LEU B 65 N LEU B 58 SHEET 1 D 4 GLY B 114 GLN B 117 0 SHEET 2 D 4 GLU B 122 ILE B 126 -1 O ILE B 123 N PHE B 116 SHEET 3 D 4 TYR B 161 GLY B 164 -1 O SER B 163 N ILE B 126 SHEET 4 D 4 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SHEET 1 E 2 ILE E 18 ASN E 24 0 SHEET 2 E 2 LEU E 29 TYR E 35 -1 O TYR E 35 N ILE E 18 SSBOND 1 CYS E 5 CYS E 55 1555 1555 2.04 SSBOND 2 CYS E 14 CYS E 38 1555 1555 2.04 SSBOND 3 CYS E 30 CYS E 51 1555 1555 2.04 CISPEP 1 GLN A 67 THR A 68 0 3.99 CISPEP 2 ARG E 1 PRO E 2 0 18.48 CRYST1 84.789 84.789 66.031 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011794 0.006809 0.000000 0.00000 SCALE2 0.000000 0.013618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015144 0.00000