HEADER HYDROLASE 30-SEP-11 3U1O TITLE THREE DIMENSIONAL STRUCTURE OF DE NOVO DESIGNED CYSTEINE ESTERASE TITLE 2 ECH19, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR49 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGN CYSTEINE ESTERASE ECH19; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, ECH19, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,M.SU,S.LEW,F.FOROUHAR,J.SEETHARAMAN,P.DAYA,R.XIAO, AUTHOR 2 C.CICCOSANTI,F.RICHTER,J.K.EVERETT,T.B.ACTON,D.BAKER,G.T.MONTELIONE, AUTHOR 3 J.F.HUNT,L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 27-NOV-24 3U1O 1 REMARK REVDAT 4 06-DEC-23 3U1O 1 REMARK REVDAT 3 13-SEP-23 3U1O 1 REMARK LINK REVDAT 2 11-DEC-13 3U1O 1 JRNL REVDAT 1 26-OCT-11 3U1O 0 JRNL AUTH F.RICHTER,R.BLOMBERG,S.D.KHARE,G.KISS,A.P.KUZIN,A.J.SMITH, JRNL AUTH 2 J.GALLAHER,Z.PIANOWSKI,R.C.HELGESON,A.GRJASNOW,R.XIAO, JRNL AUTH 3 J.SEETHARAMAN,M.SU,S.VOROBIEV,S.LEW,F.FOROUHAR, JRNL AUTH 4 G.J.KORNHABER,J.F.HUNT,G.T.MONTELIONE,L.TONG,K.N.HOUK, JRNL AUTH 5 D.HILVERT,D.BAKER JRNL TITL COMPUTATIONAL DESIGN OF CATALYTIC DYADS AND OXYANION HOLES JRNL TITL 2 FOR ESTER HYDROLYSIS. JRNL REF J.AM.CHEM.SOC. V. 134 16197 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 22871159 JRNL DOI 10.1021/JA3037367 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0304 - 5.8568 0.99 2794 171 0.2124 0.2763 REMARK 3 2 5.8568 - 4.6522 1.00 2698 152 0.1819 0.2278 REMARK 3 3 4.6522 - 4.0651 1.00 2680 116 0.1478 0.2173 REMARK 3 4 4.0651 - 3.6939 1.00 2632 161 0.1708 0.2400 REMARK 3 5 3.6939 - 3.4294 1.00 2636 141 0.2000 0.2102 REMARK 3 6 3.4294 - 3.2273 1.00 2638 127 0.2156 0.2377 REMARK 3 7 3.2273 - 3.0658 1.00 2638 130 0.2111 0.2766 REMARK 3 8 3.0658 - 2.9324 1.00 2630 130 0.2167 0.2726 REMARK 3 9 2.9324 - 2.8196 1.00 2628 131 0.2078 0.3176 REMARK 3 10 2.8196 - 2.7223 1.00 2614 133 0.2307 0.2915 REMARK 3 11 2.7223 - 2.6372 1.00 2627 130 0.2285 0.3219 REMARK 3 12 2.6372 - 2.5619 1.00 2576 148 0.2301 0.3080 REMARK 3 13 2.5619 - 2.4944 0.97 2524 132 0.2705 0.3890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 18.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.850 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56230 REMARK 3 B22 (A**2) : 0.62850 REMARK 3 B33 (A**2) : -1.19080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6798 REMARK 3 ANGLE : 1.179 9240 REMARK 3 CHIRALITY : 0.081 978 REMARK 3 PLANARITY : 0.005 1169 REMARK 3 DIHEDRAL : 16.183 2468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 50.9315 56.6045 23.5327 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.1004 REMARK 3 T33: 0.0972 T12: 0.0074 REMARK 3 T13: 0.0120 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0490 L22: 0.0642 REMARK 3 L33: 0.0365 L12: 0.0148 REMARK 3 L13: 0.0212 L23: 0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.0051 S13: 0.0129 REMARK 3 S21: -0.0016 S22: 0.0060 S23: 0.0128 REMARK 3 S31: 0.0010 S32: 0.0018 S33: 0.0119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.494 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2UVJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5) . RESERVOIR SOLUTION: LITHIUM REMARK 280 SULFATE MONOHYDRATE (LI2SO4*H2O) - 0.1M, BIS-TRIS PROPANE - 0.1M, REMARK 280 PEG 20000 24% (W/V), MACRO BATCH UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.56750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.56750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 45.86 KD, PROBABILITY=93.8% REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 410 REMARK 465 SER B 411 REMARK 465 LEU B 412 REMARK 465 GLU B 413 REMARK 465 HIS B 414 REMARK 465 HIS B 415 REMARK 465 HIS B 416 REMARK 465 HIS B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -143.01 -108.97 REMARK 500 SER A 77 49.86 -148.30 REMARK 500 SER A 229 34.20 -71.92 REMARK 500 ASN A 230 3.40 -157.59 REMARK 500 ARG A 409 119.23 133.76 REMARK 500 SER B 229 60.88 27.66 REMARK 500 ASN B 230 10.00 155.96 REMARK 500 LYS B 359 -67.22 -163.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 425 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 180 O REMARK 620 2 ASN A 183 OD1 118.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 426 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 315 O REMARK 620 2 GLY A 319 O 112.5 REMARK 620 3 HOH A 449 O 117.9 112.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 421 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 119 O REMARK 620 2 HOH B 508 O 123.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 427 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UVJ RELATED DB: PDB REMARK 900 97% HOMOLOGY REMARK 900 RELATED ID: OR49 RELATED DB: TARGETDB DBREF 3U1O A 1 419 PDB 3U1O 3U1O 1 419 DBREF 3U1O B 1 419 PDB 3U1O 3U1O 1 419 SEQRES 1 A 419 MSE GLY SER HIS MSE GLU VAL ASN LEU ARG MSE SER TRP SEQRES 2 A 419 TRP GLY GLY ASN GLY ARG HIS GLN VAL THR LEU LYS ALA SEQRES 3 A 419 LEU GLU GLU PHE HIS LYS GLN HIS PRO ASN ILE ASN VAL SEQRES 4 A 419 LYS ALA GLU TYR THR GLY TRP ASP GLY HIS LEU SER ARG SEQRES 5 A 419 LEU THR THR GLN ILE ALA GLY GLY THR GLU PRO ASP VAL SEQRES 6 A 419 MSE GLN THR ASN TRP ASN TRP LEU PRO ILE PHE SER LYS SEQRES 7 A 419 ASP GLY THR GLY PHE TYR ASN LEU PHE SER VAL LYS GLU SEQRES 8 A 419 GLN LEU ASP LEU ALA GLN PHE ASP PRO LYS GLU LEU GLN SEQRES 9 A 419 GLN THR THR VAL ASN GLY LYS LEU ASN GLY ILE PRO ILE SEQRES 10 A 419 SER VAL THR ALA MSE ILE PHE TYR PHE ASN ASP ALA THR SEQRES 11 A 419 TRP ALA LYS ALA GLY LEU GLU TYR PRO LYS THR TRP ASP SEQRES 12 A 419 GLU LEU LEU ALA ALA GLY LYS VAL PHE LYS GLU LYS LEU SEQRES 13 A 419 GLY ASP GLN TYR TYR PRO VAL VAL LEU CYS ALA GLY GLN SEQRES 14 A 419 THR LEU VAL LEU ILE ARG SER TYR MSE THR GLN LYS TYR SEQRES 15 A 419 ASN ILE PRO THR ILE ASP GLU ALA ASN LYS LYS PHE ALA SEQRES 16 A 419 TYR SER PRO GLU GLN TRP VAL GLU PHE PHE THR MSE TYR SEQRES 17 A 419 LYS THR MSE VAL ASP ASN HIS VAL MSE PRO SER THR LYS SEQRES 18 A 419 TYR TYR ALA SER PHE GLY LYS SER ASN HIS TYR GLU MSE SEQRES 19 A 419 LYS PRO TRP ILE ASN GLY GLU TRP ALA GLY THR TYR MSE SEQRES 20 A 419 TRP ASN SER THR ILE THR LYS TYR SER ASP ASN LEU THR SEQRES 21 A 419 LYS PRO ALA LYS LEU VAL LEU GLY PRO TYR PRO MSE LEU SEQRES 22 A 419 PRO GLY ALA LYS ASP ALA GLY LEU PHE PHE LEU PRO ALA SEQRES 23 A 419 GLN MSE LEU SER ILE GLY LYS SER THR LYS HIS PRO GLN SEQRES 24 A 419 GLU SER ALA MSE LEU ILE ASN PHE LEU LEU ASN SER LYS SEQRES 25 A 419 GLU GLY VAL GLU ALA LEU GLY LEU GLU ARG GLY VAL PRO SEQRES 26 A 419 LEU SER ALA THR ALA VAL THR GLN LEU ARG ALA SER GLY SEQRES 27 A 419 VAL ILE LYS ASP GLU ASP PRO SER VAL ALA GLY LEU ASN SEQRES 28 A 419 MSE ALA LEU GLU LEU PRO HIS LYS MSE THR THR SER PRO SEQRES 29 A 419 TYR PHE LEU ASP TRP GLN ILE TRP SER LEU PHE LEU ASP SEQRES 30 A 419 ALA ILE GLN TYR ILE ASP TYR GLY GLN LYS THR VAL GLN SEQRES 31 A 419 GLU THR ALA GLU TYR PHE ASN LYS GLN GLY ASP ARG ILE SEQRES 32 A 419 LEU LYS ARG ALA MSE ARG GLY SER LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS SEQRES 1 B 419 MSE GLY SER HIS MSE GLU VAL ASN LEU ARG MSE SER TRP SEQRES 2 B 419 TRP GLY GLY ASN GLY ARG HIS GLN VAL THR LEU LYS ALA SEQRES 3 B 419 LEU GLU GLU PHE HIS LYS GLN HIS PRO ASN ILE ASN VAL SEQRES 4 B 419 LYS ALA GLU TYR THR GLY TRP ASP GLY HIS LEU SER ARG SEQRES 5 B 419 LEU THR THR GLN ILE ALA GLY GLY THR GLU PRO ASP VAL SEQRES 6 B 419 MSE GLN THR ASN TRP ASN TRP LEU PRO ILE PHE SER LYS SEQRES 7 B 419 ASP GLY THR GLY PHE TYR ASN LEU PHE SER VAL LYS GLU SEQRES 8 B 419 GLN LEU ASP LEU ALA GLN PHE ASP PRO LYS GLU LEU GLN SEQRES 9 B 419 GLN THR THR VAL ASN GLY LYS LEU ASN GLY ILE PRO ILE SEQRES 10 B 419 SER VAL THR ALA MSE ILE PHE TYR PHE ASN ASP ALA THR SEQRES 11 B 419 TRP ALA LYS ALA GLY LEU GLU TYR PRO LYS THR TRP ASP SEQRES 12 B 419 GLU LEU LEU ALA ALA GLY LYS VAL PHE LYS GLU LYS LEU SEQRES 13 B 419 GLY ASP GLN TYR TYR PRO VAL VAL LEU CYS ALA GLY GLN SEQRES 14 B 419 THR LEU VAL LEU ILE ARG SER TYR MSE THR GLN LYS TYR SEQRES 15 B 419 ASN ILE PRO THR ILE ASP GLU ALA ASN LYS LYS PHE ALA SEQRES 16 B 419 TYR SER PRO GLU GLN TRP VAL GLU PHE PHE THR MSE TYR SEQRES 17 B 419 LYS THR MSE VAL ASP ASN HIS VAL MSE PRO SER THR LYS SEQRES 18 B 419 TYR TYR ALA SER PHE GLY LYS SER ASN HIS TYR GLU MSE SEQRES 19 B 419 LYS PRO TRP ILE ASN GLY GLU TRP ALA GLY THR TYR MSE SEQRES 20 B 419 TRP ASN SER THR ILE THR LYS TYR SER ASP ASN LEU THR SEQRES 21 B 419 LYS PRO ALA LYS LEU VAL LEU GLY PRO TYR PRO MSE LEU SEQRES 22 B 419 PRO GLY ALA LYS ASP ALA GLY LEU PHE PHE LEU PRO ALA SEQRES 23 B 419 GLN MSE LEU SER ILE GLY LYS SER THR LYS HIS PRO GLN SEQRES 24 B 419 GLU SER ALA MSE LEU ILE ASN PHE LEU LEU ASN SER LYS SEQRES 25 B 419 GLU GLY VAL GLU ALA LEU GLY LEU GLU ARG GLY VAL PRO SEQRES 26 B 419 LEU SER ALA THR ALA VAL THR GLN LEU ARG ALA SER GLY SEQRES 27 B 419 VAL ILE LYS ASP GLU ASP PRO SER VAL ALA GLY LEU ASN SEQRES 28 B 419 MSE ALA LEU GLU LEU PRO HIS LYS MSE THR THR SER PRO SEQRES 29 B 419 TYR PHE LEU ASP TRP GLN ILE TRP SER LEU PHE LEU ASP SEQRES 30 B 419 ALA ILE GLN TYR ILE ASP TYR GLY GLN LYS THR VAL GLN SEQRES 31 B 419 GLU THR ALA GLU TYR PHE ASN LYS GLN GLY ASP ARG ILE SEQRES 32 B 419 LEU LYS ARG ALA MSE ARG GLY SER LEU GLU HIS HIS HIS SEQRES 33 B 419 HIS HIS HIS MODRES 3U1O MSE A 5 MET SELENOMETHIONINE MODRES 3U1O MSE A 11 MET SELENOMETHIONINE MODRES 3U1O MSE A 66 MET SELENOMETHIONINE MODRES 3U1O MSE A 122 MET SELENOMETHIONINE MODRES 3U1O MSE A 178 MET SELENOMETHIONINE MODRES 3U1O MSE A 207 MET SELENOMETHIONINE MODRES 3U1O MSE A 211 MET SELENOMETHIONINE MODRES 3U1O MSE A 217 MET SELENOMETHIONINE MODRES 3U1O MSE A 234 MET SELENOMETHIONINE MODRES 3U1O MSE A 247 MET SELENOMETHIONINE MODRES 3U1O MSE A 272 MET SELENOMETHIONINE MODRES 3U1O MSE A 288 MET SELENOMETHIONINE MODRES 3U1O MSE A 303 MET SELENOMETHIONINE MODRES 3U1O MSE A 352 MET SELENOMETHIONINE MODRES 3U1O MSE A 360 MET SELENOMETHIONINE MODRES 3U1O MSE A 408 MET SELENOMETHIONINE MODRES 3U1O MSE B 5 MET SELENOMETHIONINE MODRES 3U1O MSE B 11 MET SELENOMETHIONINE MODRES 3U1O MSE B 66 MET SELENOMETHIONINE MODRES 3U1O MSE B 122 MET SELENOMETHIONINE MODRES 3U1O MSE B 178 MET SELENOMETHIONINE MODRES 3U1O MSE B 207 MET SELENOMETHIONINE MODRES 3U1O MSE B 211 MET SELENOMETHIONINE MODRES 3U1O MSE B 217 MET SELENOMETHIONINE MODRES 3U1O MSE B 234 MET SELENOMETHIONINE MODRES 3U1O MSE B 247 MET SELENOMETHIONINE MODRES 3U1O MSE B 272 MET SELENOMETHIONINE MODRES 3U1O MSE B 288 MET SELENOMETHIONINE MODRES 3U1O MSE B 303 MET SELENOMETHIONINE MODRES 3U1O MSE B 352 MET SELENOMETHIONINE MODRES 3U1O MSE B 360 MET SELENOMETHIONINE MODRES 3U1O MSE B 408 MET SELENOMETHIONINE HET MSE A 5 8 HET MSE A 11 8 HET MSE A 66 8 HET MSE A 122 8 HET MSE A 178 8 HET MSE A 207 8 HET MSE A 211 8 HET MSE A 217 8 HET MSE A 234 8 HET MSE A 247 8 HET MSE A 272 8 HET MSE A 288 8 HET MSE A 303 8 HET MSE A 352 8 HET MSE A 360 8 HET MSE A 408 8 HET MSE B 5 8 HET MSE B 11 8 HET MSE B 66 8 HET MSE B 122 8 HET MSE B 178 8 HET MSE B 207 8 HET MSE B 211 8 HET MSE B 217 8 HET MSE B 234 8 HET MSE B 247 8 HET MSE B 272 8 HET MSE B 288 8 HET MSE B 303 8 HET MSE B 352 8 HET MSE B 360 8 HET MSE B 408 8 HET SO4 A 420 5 HET SO4 A 421 5 HET SO4 A 422 5 HET SO4 A 423 5 HET SO4 A 424 5 HET NA A 425 1 HET NA A 426 1 HET NA A 427 1 HET SO4 B 420 5 HET NA B 421 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 1 MSE 32(C5 H11 N O2 SE) FORMUL 3 SO4 6(O4 S 2-) FORMUL 8 NA 4(NA 1+) FORMUL 13 HOH *439(H2 O) HELIX 1 1 GLY A 16 HIS A 34 1 19 HELIX 2 2 GLY A 48 GLY A 59 1 12 HELIX 3 3 ASN A 69 ASN A 71 5 3 HELIX 4 4 TRP A 72 SER A 77 1 6 HELIX 5 5 ASN A 85 LYS A 90 5 6 HELIX 6 6 ASP A 94 PHE A 98 5 5 HELIX 7 7 ASP A 99 GLN A 105 1 7 HELIX 8 8 ASP A 128 ALA A 134 1 7 HELIX 9 9 THR A 141 LEU A 156 1 16 HELIX 10 10 CYS A 166 ASN A 183 1 18 HELIX 11 11 SER A 197 ASN A 214 1 18 HELIX 12 12 SER A 219 LYS A 221 5 3 HELIX 13 13 TYR A 222 GLY A 227 1 6 HELIX 14 14 ASN A 230 GLU A 233 5 4 HELIX 15 15 MSE A 234 ASN A 239 1 6 HELIX 16 16 ILE A 252 ASN A 258 1 7 HELIX 17 17 HIS A 297 SER A 311 1 15 HELIX 18 18 SER A 311 GLY A 319 1 9 HELIX 19 19 SER A 327 SER A 337 1 11 HELIX 20 20 ASP A 344 LEU A 356 1 13 HELIX 21 21 SER A 363 LEU A 367 5 5 HELIX 22 22 ASP A 368 TYR A 384 1 17 HELIX 23 23 THR A 388 MSE A 408 1 21 HELIX 24 24 GLY B 16 HIS B 34 1 19 HELIX 25 25 GLY B 48 GLY B 59 1 12 HELIX 26 26 ASN B 69 ASN B 71 5 3 HELIX 27 27 TRP B 72 SER B 77 1 6 HELIX 28 28 ASN B 85 LYS B 90 5 6 HELIX 29 29 ASP B 94 PHE B 98 5 5 HELIX 30 30 ASP B 99 GLN B 104 1 6 HELIX 31 31 ASP B 128 ALA B 134 1 7 HELIX 32 32 THR B 141 LEU B 156 1 16 HELIX 33 33 CYS B 166 ASN B 183 1 18 HELIX 34 34 GLU B 189 LYS B 192 5 4 HELIX 35 35 SER B 197 ASN B 214 1 18 HELIX 36 36 SER B 219 LYS B 221 5 3 HELIX 37 37 TYR B 222 GLY B 227 1 6 HELIX 38 38 ASN B 230 GLU B 233 5 4 HELIX 39 39 MSE B 234 ASN B 239 1 6 HELIX 40 40 ILE B 252 ASP B 257 1 6 HELIX 41 41 HIS B 297 SER B 311 1 15 HELIX 42 42 SER B 311 GLY B 319 1 9 HELIX 43 43 SER B 327 SER B 337 1 11 HELIX 44 44 ASP B 344 LEU B 356 1 13 HELIX 45 45 SER B 363 LEU B 367 5 5 HELIX 46 46 ASP B 368 TYR B 384 1 17 HELIX 47 47 THR B 388 ARG B 409 1 22 SHEET 1 A 6 ILE A 37 THR A 44 0 SHEET 2 A 6 VAL A 7 TRP A 14 1 N VAL A 7 O ASN A 38 SHEET 3 A 6 VAL A 65 THR A 68 1 O GLN A 67 N SER A 12 SHEET 4 A 6 PHE A 283 ILE A 291 -1 O MSE A 288 N THR A 68 SHEET 5 A 6 ILE A 115 ASN A 127 -1 N ILE A 117 O GLN A 287 SHEET 6 A 6 GLY A 244 TRP A 248 -1 O MSE A 247 N ILE A 123 SHEET 1 B 6 ILE A 37 THR A 44 0 SHEET 2 B 6 VAL A 7 TRP A 14 1 N VAL A 7 O ASN A 38 SHEET 3 B 6 VAL A 65 THR A 68 1 O GLN A 67 N SER A 12 SHEET 4 B 6 PHE A 283 ILE A 291 -1 O MSE A 288 N THR A 68 SHEET 5 B 6 ILE A 115 ASN A 127 -1 N ILE A 117 O GLN A 287 SHEET 6 B 6 LEU A 265 LEU A 267 -1 O VAL A 266 N PHE A 126 SHEET 1 C 2 THR A 107 VAL A 108 0 SHEET 2 C 2 LYS A 111 LEU A 112 -1 O LYS A 111 N VAL A 108 SHEET 1 D 2 ILE A 187 ASP A 188 0 SHEET 2 D 2 LYS A 193 PHE A 194 -1 O LYS A 193 N ASP A 188 SHEET 1 E 6 ILE B 37 THR B 44 0 SHEET 2 E 6 VAL B 7 TRP B 14 1 N VAL B 7 O ASN B 38 SHEET 3 E 6 VAL B 65 THR B 68 1 O VAL B 65 N ARG B 10 SHEET 4 E 6 PHE B 283 ILE B 291 -1 O MSE B 288 N THR B 68 SHEET 5 E 6 ILE B 115 ASN B 127 -1 N ILE B 115 O LEU B 289 SHEET 6 E 6 GLY B 244 TRP B 248 -1 O MSE B 247 N ILE B 123 SHEET 1 F 6 ILE B 37 THR B 44 0 SHEET 2 F 6 VAL B 7 TRP B 14 1 N VAL B 7 O ASN B 38 SHEET 3 F 6 VAL B 65 THR B 68 1 O VAL B 65 N ARG B 10 SHEET 4 F 6 PHE B 283 ILE B 291 -1 O MSE B 288 N THR B 68 SHEET 5 F 6 ILE B 115 ASN B 127 -1 N ILE B 115 O LEU B 289 SHEET 6 F 6 LEU B 265 LEU B 267 -1 O VAL B 266 N PHE B 126 SHEET 1 G 2 THR B 107 VAL B 108 0 SHEET 2 G 2 LYS B 111 LEU B 112 -1 O LYS B 111 N VAL B 108 SHEET 1 H 2 ILE B 187 ASP B 188 0 SHEET 2 H 2 LYS B 193 PHE B 194 -1 O LYS B 193 N ASP B 188 LINK C HIS A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N GLU A 6 1555 1555 1.32 LINK C ARG A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N SER A 12 1555 1555 1.33 LINK C VAL A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N GLN A 67 1555 1555 1.33 LINK C ALA A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N ILE A 123 1555 1555 1.32 LINK C TYR A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N THR A 179 1555 1555 1.33 LINK C THR A 206 N MSE A 207 1555 1555 1.33 LINK C MSE A 207 N TYR A 208 1555 1555 1.33 LINK C THR A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N VAL A 212 1555 1555 1.33 LINK C VAL A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N PRO A 218 1555 1555 1.34 LINK C GLU A 233 N MSE A 234 1555 1555 1.34 LINK C MSE A 234 N LYS A 235 1555 1555 1.33 LINK C TYR A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N TRP A 248 1555 1555 1.33 LINK C PRO A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N LEU A 273 1555 1555 1.33 LINK C GLN A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N LEU A 289 1555 1555 1.32 LINK C ALA A 302 N MSE A 303 1555 1555 1.33 LINK C MSE A 303 N LEU A 304 1555 1555 1.33 LINK C ASN A 351 N MSE A 352 1555 1555 1.32 LINK C MSE A 352 N ALA A 353 1555 1555 1.33 LINK C LYS A 359 N MSE A 360 1555 1555 1.33 LINK C MSE A 360 N THR A 361 1555 1555 1.33 LINK C ALA A 407 N MSE A 408 1555 1555 1.33 LINK C MSE A 408 N ARG A 409 1555 1555 1.34 LINK C HIS B 4 N MSE B 5 1555 1555 1.33 LINK C MSE B 5 N GLU B 6 1555 1555 1.33 LINK C ARG B 10 N MSE B 11 1555 1555 1.32 LINK C MSE B 11 N SER B 12 1555 1555 1.33 LINK C VAL B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N GLN B 67 1555 1555 1.32 LINK C ALA B 121 N MSE B 122 1555 1555 1.33 LINK C MSE B 122 N ILE B 123 1555 1555 1.33 LINK C TYR B 177 N MSE B 178 1555 1555 1.33 LINK C MSE B 178 N THR B 179 1555 1555 1.33 LINK C THR B 206 N MSE B 207 1555 1555 1.33 LINK C MSE B 207 N TYR B 208 1555 1555 1.33 LINK C THR B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N VAL B 212 1555 1555 1.33 LINK C VAL B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N PRO B 218 1555 1555 1.34 LINK C GLU B 233 N MSE B 234 1555 1555 1.34 LINK C MSE B 234 N LYS B 235 1555 1555 1.33 LINK C TYR B 246 N MSE B 247 1555 1555 1.33 LINK C MSE B 247 N TRP B 248 1555 1555 1.33 LINK C PRO B 271 N MSE B 272 1555 1555 1.33 LINK C MSE B 272 N LEU B 273 1555 1555 1.33 LINK C GLN B 287 N MSE B 288 1555 1555 1.33 LINK C MSE B 288 N LEU B 289 1555 1555 1.32 LINK C ALA B 302 N MSE B 303 1555 1555 1.32 LINK C MSE B 303 N LEU B 304 1555 1555 1.32 LINK C ASN B 351 N MSE B 352 1555 1555 1.32 LINK C MSE B 352 N ALA B 353 1555 1555 1.33 LINK C LYS B 359 N MSE B 360 1555 1555 1.33 LINK C MSE B 360 N THR B 361 1555 1555 1.32 LINK C ALA B 407 N MSE B 408 1555 1555 1.32 LINK C MSE B 408 N ARG B 409 1555 1555 1.33 LINK O SER A 3 NA NA A 427 1555 1555 2.97 LINK O GLN A 180 NA NA A 425 1555 1555 2.88 LINK OD1 ASN A 183 NA NA A 425 1555 1555 3.17 LINK O VAL A 315 NA NA A 426 1555 1555 2.75 LINK O GLY A 319 NA NA A 426 1555 1555 2.90 LINK NA NA A 426 O HOH A 449 1555 1555 3.02 LINK O VAL B 119 NA NA B 421 1555 1555 2.83 LINK NA NA B 421 O HOH B 508 1555 1555 2.98 CISPEP 1 LYS A 261 PRO A 262 0 10.27 CISPEP 2 SER A 411 LEU A 412 0 -3.02 CISPEP 3 LYS B 261 PRO B 262 0 5.24 SITE 1 AC1 5 TRP B 14 ARG B 19 GLN B 287 HOH B 584 SITE 2 AC1 5 HOH B 662 SITE 1 AC2 4 VAL B 119 ASN B 249 LEU B 350 HOH B 508 SITE 1 AC3 3 TRP A 14 ARG A 19 GLN A 287 SITE 1 AC4 5 LYS A 261 PRO A 262 HOH A 646 GLY B 157 SITE 2 AC4 5 ASP B 158 SITE 1 AC5 6 ARG A 175 THR A 186 ILE A 187 THR A 361 SITE 2 AC5 6 THR A 362 SER A 363 SITE 1 AC6 6 GLU A 62 ASP A 64 SER A 294 THR A 295 SITE 2 AC6 6 HOH A 467 HOH A 607 SITE 1 AC7 3 VAL A 212 HIS A 215 HOH A 637 SITE 1 AC8 4 GLN A 180 ASN A 183 LYS A 277 ASP A 278 SITE 1 AC9 4 VAL A 315 GLY A 319 LEU A 334 HOH A 449 SITE 1 BC1 4 GLY A 2 SER A 3 ASP A 143 ALA A 147 CRYST1 109.135 129.200 72.178 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013855 0.00000