HEADER HYDROLASE 30-SEP-11 3U1R TITLE STRUCTURE ANALYSIS OF A NEW PSYCHROPHILIC MARINE PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE METALLOPROTEASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM SP.; SOURCE 3 ORGANISM_TAXID: 686394; SOURCE 4 STRAIN: YS-80-122 KEYWDS BETA JELLY ROLL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.-C.ZHANG,M.SUN,L.TANG,Q.-H.WANG,J.-H.HAO,Y.HAN,X.-J.HU,M.ZHOU,S.- AUTHOR 2 X.LIN REVDAT 2 28-FEB-24 3U1R 1 REMARK LINK REVDAT 1 31-OCT-12 3U1R 0 JRNL AUTH S.C.ZHANG,M.SUN,T.LI,Q.H.WANG,J.H.HAO,Y.HAN,X.J.HU,M.ZHOU, JRNL AUTH 2 S.X.LIN JRNL TITL STRUCTURE ANALYSIS OF A NEW PSYCHROPHILIC MARINE PROTEASE. JRNL REF PLOS ONE V. 6 26939 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22132082 JRNL DOI 10.1371/JOURNAL.PONE.0026939 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 24215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1304 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3393 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3467 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4709 ; 1.968 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 7.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;36.317 ;25.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;14.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.178 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2736 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3U1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4K, 0.1 M TRIS PH 8.0, 0.2 M REMARK 280 SODIUM ACETATE, 0.1 M LI2SO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.95350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.70800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.59750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.70800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.95350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.59750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 SER A 11 REMARK 465 VAL A 12 REMARK 465 ASN A 13 REMARK 465 PRO A 14 REMARK 465 THR A 15 REMARK 465 PHE A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ASN A 19 REMARK 465 ASN A 201 REMARK 465 ALA A 202 REMARK 465 GLY A 203 REMARK 465 ASN A 204 REMARK 465 GLY A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 196 ZN ZN A 600 1.65 REMARK 500 O HOH A 944 O HOH A 947 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 357 -158.73 -128.45 REMARK 500 ALA A 402 77.48 -156.44 REMARK 500 ASP A 408 33.56 -141.68 REMARK 500 LEU A 413 -60.25 -131.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 700 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD1 REMARK 620 2 ASP A 70 OD1 87.7 REMARK 620 3 VAL A 72 O 85.0 78.8 REMARK 620 4 ASN A 74 OD1 166.5 100.5 107.0 REMARK 620 5 ASP A 131 OD2 97.3 156.3 78.6 79.6 REMARK 620 6 ASP A 131 OD1 89.6 158.6 122.1 78.9 45.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 NE2 REMARK 620 2 HIS A 190 NE2 98.2 REMARK 620 3 TYR A 226 OH 86.1 169.8 REMARK 620 4 HOH A 801 O 113.8 102.9 67.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 267 O REMARK 620 2 GLY A 269 O 89.9 REMARK 620 3 THR A 271 OG1 85.6 77.9 REMARK 620 4 ASP A 299 OD2 90.7 159.1 81.3 REMARK 620 5 ASP A 299 OD1 82.5 148.0 131.9 52.6 REMARK 620 6 GLY A 301 O 91.1 77.2 154.9 123.7 71.9 REMARK 620 7 ASP A 304 OD1 171.1 90.3 85.8 85.9 101.8 97.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 302 O REMARK 620 2 ASP A 304 OD2 74.6 REMARK 620 3 THR A 341 O 163.5 105.6 REMARK 620 4 GLU A 343 OE2 82.9 129.9 84.7 REMARK 620 5 GLU A 343 OE1 83.8 82.4 80.0 50.6 REMARK 620 6 HOH A 802 O 115.5 77.3 80.1 152.0 146.4 REMARK 620 7 HOH A 815 O 91.5 140.6 97.7 82.9 133.5 76.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 348 O REMARK 620 2 GLY A 350 O 95.4 REMARK 620 3 ASP A 352 OD2 83.1 81.1 REMARK 620 4 GLY A 365 O 88.7 175.4 97.6 REMARK 620 5 ALA A 367 O 82.5 82.2 156.7 100.3 REMARK 620 6 ASP A 370 OD1 167.5 82.2 84.4 93.3 109.2 REMARK 620 7 ASP A 370 OD2 142.6 112.1 124.6 65.1 77.0 47.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 357 O REMARK 620 2 ALA A 359 O 91.9 REMARK 620 3 ASN A 361 OD1 93.0 76.9 REMARK 620 4 GLY A 374 O 86.0 167.7 91.1 REMARK 620 5 GLY A 376 O 83.9 87.3 163.8 104.4 REMARK 620 6 ASP A 379 OD1 170.6 84.1 77.7 96.1 104.4 REMARK 620 7 ASP A 379 OD2 141.8 121.5 111.0 65.1 80.2 46.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 366 O REMARK 620 2 GLY A 368 O 104.3 REMARK 620 3 ASP A 370 OD2 79.9 83.9 REMARK 620 4 GLY A 383 O 77.3 175.0 91.8 REMARK 620 5 SER A 385 O 91.0 78.6 157.6 106.2 REMARK 620 6 ASP A 388 OD1 164.8 85.6 89.9 91.9 102.4 REMARK 620 7 ASP A 388 OD2 134.1 113.3 128.1 67.6 72.3 46.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 706 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 375 O REMARK 620 2 GLY A 377 O 108.9 REMARK 620 3 ASP A 379 OD2 94.3 85.7 REMARK 620 4 ASP A 397 O 85.3 87.6 172.7 REMARK 620 5 ASP A 404 OD1 161.0 90.1 88.2 94.7 REMARK 620 6 HOH A 929 O 84.5 166.1 89.9 97.3 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 707 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 384 O REMARK 620 2 GLY A 386 O 102.4 REMARK 620 3 ASP A 388 OD2 74.4 80.3 REMARK 620 4 GLN A 410 OE1 93.8 92.9 164.4 REMARK 620 5 ASP A 414 OD1 165.0 82.6 92.9 100.1 REMARK 620 6 HOH A 803 O 84.9 166.2 90.7 98.4 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 707 DBREF 3U1R A 1 480 UNP D0VMS8 D0VMS8_9FLAO 1 480 SEQRES 1 A 480 MET SER LYS LEU LYS GLU LYS ALA ALA LEU SER VAL ASN SEQRES 2 A 480 PRO THR PHE ALA ALA ASN GLY THR SER SER ALA PHE THR SEQRES 3 A 480 GLN VAL ASP ASN PHE SER HIS PHE TYR ASP ARG GLY ASN SEQRES 4 A 480 HIS LEU VAL ASN GLY LYS PRO SER PHE THR VAL ASP GLN SEQRES 5 A 480 ALA ALA ASP GLN LEU THR ARG SER GLY ALA SER TRP TYR SEQRES 6 A 480 ASP LEU ASN GLY ASP GLY VAL ILE ASN LEU SER TYR THR SEQRES 7 A 480 PHE LEU THR SER PRO PRO PRO GLY TYR ALA SER ARG GLY SEQRES 8 A 480 LEU GLY THR PHE SER SER PHE SER GLY LEU GLN LYS GLU SEQRES 9 A 480 GLN ALA LYS LEU SER LEU GLU SER TRP ALA ASP VAL ALA SEQRES 10 A 480 LYS VAL THR PHE THR GLU GLY PRO ALA ALA ARG GLY ASP SEQRES 11 A 480 ASP GLY HIS MET THR PHE ALA ASN PHE SER ALA SER ASN SEQRES 12 A 480 GLY GLY ALA ALA PHE ALA TYR LEU PRO ASN SER SER ARG SEQRES 13 A 480 LYS GLY GLU SER TRP TYR LEU ILE ASN LYS ASP TYR ASP SEQRES 14 A 480 VAL ASN LYS THR PRO GLY GLU GLY ASN TYR GLY ARG GLN SEQRES 15 A 480 THR LEU THR HIS GLU ILE GLY HIS THR LEU GLY LEU SER SEQRES 16 A 480 HIS PRO GLY ASP TYR ASN ALA GLY ASN GLY ASN PRO SER SEQRES 17 A 480 TYR ARG ASP ALA VAL TYR GLY GLU ASP THR ARG ALA TYR SEQRES 18 A 480 SER VAL MET SER TYR TRP SER GLU LYS ASN THR GLY GLN SEQRES 19 A 480 VAL PHE THR LYS THR GLY GLU GLY ALA TYR ALA SER ALA SEQRES 20 A 480 PRO LEU LEU ASP ASP ILE ALA ALA VAL GLN LYS LEU TYR SEQRES 21 A 480 GLY ALA ASN MET GLU THR ARG ALA GLY ASP THR VAL TYR SEQRES 22 A 480 GLY PHE ASN SER THR ALA ASP ARG ASP TYR TYR SER ALA SEQRES 23 A 480 THR SER ALA THR ASP LYS LEU ILE PHE SER VAL TRP ASP SEQRES 24 A 480 GLY GLY GLY ASN ASP THR LEU ASP PHE SER GLY PHE SER SEQRES 25 A 480 GLN ASN GLN LYS ILE ASN LEU ALA ALA GLY SER PHE SER SEQRES 26 A 480 ASP VAL GLY GLY MET THR GLY ASN VAL SER ILE ALA GLN SEQRES 27 A 480 GLY VAL THR ILE GLU ASN ALA ILE GLY GLY SER GLY ASN SEQRES 28 A 480 ASP LEU LEU LEU GLY ASN ALA ALA SER ASN ILE LEU LYS SEQRES 29 A 480 GLY GLY ALA GLY ASN ASP ILE ILE TYR GLY GLY GLY GLY SEQRES 30 A 480 ALA ASP LYS LEU TRP GLY GLY SER GLY SER ASP THR PHE SEQRES 31 A 480 VAL TYR ARG GLU VAL SER ASP SER THR PRO LYS ALA ALA SEQRES 32 A 480 ASP THR LEU MET ASP PHE GLN THR GLY LEU ASP LYS ILE SEQRES 33 A 480 ASP LEU THR GLY ILE THR HIS LEU SER GLY LEU ASN PHE SEQRES 34 A 480 VAL ASN ALA PHE THR GLY GLN ALA GLY ASP ALA VAL VAL SEQRES 35 A 480 SER TYR ASN GLN ALA SER ASN ALA GLY SER LEU GLN VAL SEQRES 36 A 480 ASP PHE SER GLY HIS GLY VAL ALA ASP PHE LEU ILE THR SEQRES 37 A 480 THR VAL GLY GLN VAL ALA THR TYR ASP ILE VAL ALA HET ZN A 600 1 HET CA A 700 1 HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HET CA A 705 1 HET CA A 706 1 HET CA A 707 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 CA 8(CA 2+) FORMUL 11 HOH *162(H2 O) HELIX 1 1 SER A 22 TYR A 35 1 14 HELIX 2 2 THR A 49 THR A 58 1 10 HELIX 3 3 GLY A 86 GLY A 91 5 6 HELIX 4 4 SER A 99 ALA A 117 1 19 HELIX 5 5 ALA A 141 GLY A 145 5 5 HELIX 6 6 ASP A 169 THR A 173 5 5 HELIX 7 7 ASN A 178 LEU A 192 1 15 HELIX 8 8 SER A 208 ALA A 212 5 5 HELIX 9 9 SER A 228 GLY A 233 5 6 HELIX 10 10 LEU A 249 GLY A 261 1 13 HELIX 11 11 ARG A 281 SER A 285 5 5 HELIX 12 12 GLU A 394 SER A 398 5 5 HELIX 13 13 LEU A 418 HIS A 423 1 6 HELIX 14 14 GLN A 446 SER A 448 5 3 HELIX 15 15 ALA A 474 TYR A 476 5 3 SHEET 1 A 2 LEU A 41 VAL A 42 0 SHEET 2 A 2 LYS A 45 PRO A 46 -1 O LYS A 45 N VAL A 42 SHEET 1 B 5 VAL A 119 GLU A 123 0 SHEET 2 B 5 ILE A 73 PHE A 79 1 N ILE A 73 O THR A 120 SHEET 3 B 5 GLY A 132 PHE A 139 1 O MET A 134 N SER A 76 SHEET 4 B 5 GLU A 159 LEU A 163 1 O SER A 160 N THR A 135 SHEET 5 B 5 ALA A 147 ALA A 149 -1 N PHE A 148 O TRP A 161 SHEET 1 C 7 VAL A 272 GLY A 274 0 SHEET 2 C 7 THR A 305 ASP A 307 1 O ASP A 307 N TYR A 273 SHEET 3 C 7 ASN A 344 ILE A 346 1 O ILE A 346 N LEU A 306 SHEET 4 C 7 ILE A 362 LYS A 364 1 O LYS A 364 N ALA A 345 SHEET 5 C 7 LYS A 380 TRP A 382 1 O TRP A 382 N LEU A 363 SHEET 6 C 7 ASP A 404 LEU A 406 1 O THR A 405 N LEU A 381 SHEET 7 C 7 PHE A 465 VAL A 470 1 O VAL A 470 N LEU A 406 SHEET 1 D 3 PHE A 295 VAL A 297 0 SHEET 2 D 3 VAL A 334 ILE A 336 1 O SER A 335 N VAL A 297 SHEET 3 D 3 PHE A 324 SER A 325 -1 N SER A 325 O VAL A 334 SHEET 1 E 6 LYS A 316 ASN A 318 0 SHEET 2 E 6 LEU A 353 LEU A 355 1 O LEU A 355 N ILE A 317 SHEET 3 E 6 ILE A 371 TYR A 373 1 O TYR A 373 N LEU A 354 SHEET 4 E 6 THR A 389 VAL A 391 1 O VAL A 391 N ILE A 372 SHEET 5 E 6 LYS A 415 ASP A 417 1 O ASP A 417 N PHE A 390 SHEET 6 E 6 ILE A 478 VAL A 479 1 O VAL A 479 N ILE A 416 SHEET 1 F 3 ASN A 428 PHE A 429 0 SHEET 2 F 3 ASP A 439 ASN A 445 1 O ALA A 440 N ASN A 428 SHEET 3 F 3 ALA A 450 ASP A 456 -1 O ALA A 450 N ASN A 445 LINK OD1 ASP A 66 CA CA A 700 1555 1555 2.37 LINK OD1 ASP A 70 CA CA A 700 1555 1555 2.36 LINK O VAL A 72 CA CA A 700 1555 1555 2.34 LINK OD1 ASN A 74 CA CA A 700 1555 1555 2.29 LINK OD2 ASP A 131 CA CA A 700 1555 1555 2.36 LINK OD1 ASP A 131 CA CA A 700 1555 1555 3.16 LINK NE2 HIS A 186 ZN ZN A 600 1555 1555 2.09 LINK NE2 HIS A 190 ZN ZN A 600 1555 1555 2.10 LINK OH TYR A 226 ZN ZN A 600 1555 1555 2.58 LINK O ARG A 267 CA CA A 701 1555 1555 2.15 LINK O GLY A 269 CA CA A 701 1555 1555 2.34 LINK OG1 THR A 271 CA CA A 701 1555 1555 2.44 LINK OD2 ASP A 299 CA CA A 701 1555 1555 2.43 LINK OD1 ASP A 299 CA CA A 701 1555 1555 2.46 LINK O GLY A 301 CA CA A 701 1555 1555 2.31 LINK O GLY A 302 CA CA A 702 1555 1555 2.39 LINK OD1 ASP A 304 CA CA A 701 1555 1555 2.28 LINK OD2 ASP A 304 CA CA A 702 1555 1555 2.36 LINK O THR A 341 CA CA A 702 1555 1555 2.26 LINK OE2 GLU A 343 CA CA A 702 1555 1555 2.48 LINK OE1 GLU A 343 CA CA A 702 1555 1555 2.62 LINK O GLY A 348 CA CA A 703 1555 1555 2.35 LINK O GLY A 350 CA CA A 703 1555 1555 2.36 LINK OD2 ASP A 352 CA CA A 703 1555 1555 2.38 LINK O ASN A 357 CA CA A 705 1555 1555 2.51 LINK O ALA A 359 CA CA A 705 1555 1555 2.30 LINK OD1 ASN A 361 CA CA A 705 1555 1555 2.30 LINK O GLY A 365 CA CA A 703 1555 1555 2.38 LINK O GLY A 366 CA CA A 704 1555 1555 2.41 LINK O ALA A 367 CA CA A 703 1555 1555 2.34 LINK O GLY A 368 CA CA A 704 1555 1555 2.29 LINK OD1 ASP A 370 CA CA A 703 1555 1555 2.40 LINK OD2 ASP A 370 CA CA A 703 1555 1555 2.91 LINK OD2 ASP A 370 CA CA A 704 1555 1555 2.39 LINK O GLY A 374 CA CA A 705 1555 1555 2.32 LINK O GLY A 375 CA CA A 706 1555 1555 2.33 LINK O GLY A 376 CA CA A 705 1555 1555 2.28 LINK O GLY A 377 CA CA A 706 1555 1555 2.19 LINK OD1 ASP A 379 CA CA A 705 1555 1555 2.36 LINK OD2 ASP A 379 CA CA A 705 1555 1555 3.00 LINK OD2 ASP A 379 CA CA A 706 1555 1555 2.29 LINK O GLY A 383 CA CA A 704 1555 1555 2.33 LINK O GLY A 384 CA CA A 707 1555 1555 2.63 LINK O SER A 385 CA CA A 704 1555 1555 2.34 LINK O GLY A 386 CA CA A 707 1555 1555 2.75 LINK OD1 ASP A 388 CA CA A 704 1555 1555 2.39 LINK OD2 ASP A 388 CA CA A 704 1555 1555 2.94 LINK OD2 ASP A 388 CA CA A 707 1555 1555 2.45 LINK O ASP A 397 CA CA A 706 1555 1555 2.39 LINK OD1 ASP A 404 CA CA A 706 1555 1555 2.48 LINK OE1 GLN A 410 CA CA A 707 1555 1555 2.18 LINK OD1 ASP A 414 CA CA A 707 1555 1555 2.72 LINK ZN ZN A 600 O HOH A 801 1555 1555 2.29 LINK CA CA A 702 O HOH A 802 1555 1555 2.42 LINK CA CA A 702 O HOH A 815 1555 1555 2.41 LINK CA CA A 706 O HOH A 929 1555 1555 2.26 LINK CA CA A 707 O HOH A 803 1555 1555 2.42 CISPEP 1 GLU A 241 GLY A 242 0 -23.49 SITE 1 AC1 5 HIS A 186 HIS A 190 HIS A 196 TYR A 226 SITE 2 AC1 5 HOH A 801 SITE 1 AC2 6 ASP A 66 ASN A 68 ASP A 70 VAL A 72 SITE 2 AC2 6 ASN A 74 ASP A 131 SITE 1 AC3 6 ARG A 267 GLY A 269 THR A 271 ASP A 299 SITE 2 AC3 6 GLY A 301 ASP A 304 SITE 1 AC4 6 GLY A 302 ASP A 304 THR A 341 GLU A 343 SITE 2 AC4 6 HOH A 802 HOH A 815 SITE 1 AC5 6 GLY A 348 GLY A 350 ASP A 352 GLY A 365 SITE 2 AC5 6 ALA A 367 ASP A 370 SITE 1 AC6 6 GLY A 366 GLY A 368 ASP A 370 GLY A 383 SITE 2 AC6 6 SER A 385 ASP A 388 SITE 1 AC7 6 ASN A 357 ALA A 359 ASN A 361 GLY A 374 SITE 2 AC7 6 GLY A 376 ASP A 379 SITE 1 AC8 6 GLY A 375 GLY A 377 ASP A 379 ASP A 397 SITE 2 AC8 6 ASP A 404 HOH A 929 SITE 1 AC9 6 GLY A 384 GLY A 386 ASP A 388 GLN A 410 SITE 2 AC9 6 ASP A 414 HOH A 803 CRYST1 45.907 75.195 115.416 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008664 0.00000