HEADER HYDROLASE 30-SEP-11 3U1X TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE (BDI_1869) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503; SOURCE 5 GENE: BDI_1869; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS GLYCOSYL HYDROLYSIS, CARBOHYDRATE METABOLISM, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3U1X 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 3U1X 1 JRNL REVDAT 2 08-NOV-17 3U1X 1 REMARK REVDAT 1 26-OCT-11 3U1X 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE JRNL TITL 2 (BDI_1869) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.70 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 44063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2234 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2633 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 431 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : -0.31000 REMARK 3 B23 (A**2) : 0.04000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3762 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2557 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5094 ; 1.346 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6229 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 7.311 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;36.134 ;25.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;12.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 4.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4230 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 786 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 30 A 257 5 REMARK 3 1 B 30 B 257 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1258 ; 0.270 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1675 ; 0.480 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1258 ; 3.370 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1675 ; 3.830 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7329 -0.8907 53.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: 0.0039 REMARK 3 T33: 0.0251 T12: -0.0021 REMARK 3 T13: -0.0077 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4785 L22: 0.2087 REMARK 3 L33: 0.2557 L12: 0.0432 REMARK 3 L13: -0.0148 L23: 0.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.0289 S13: -0.0297 REMARK 3 S21: -0.0028 S22: 0.0066 S23: 0.0030 REMARK 3 S31: 0.0160 S32: 0.0126 S33: -0.0006 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 258 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9598 -6.1419 90.0584 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.0306 REMARK 3 T33: 0.0181 T12: 0.0137 REMARK 3 T13: 0.0005 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.9573 L22: 0.4442 REMARK 3 L33: 1.0668 L12: 0.2674 REMARK 3 L13: 0.0526 L23: -0.2575 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0615 S13: -0.0525 REMARK 3 S21: 0.0419 S22: 0.0007 S23: -0.0097 REMARK 3 S31: 0.0290 S32: 0.0168 S33: 0.0070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. PEG (PGE) MODELED ARE PRESENT IN CRYO REMARK 3 CONDITION. 4. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 3U1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.459 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6, 30% POLYETHYLENE GLYCOL REMARK 280 6000, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 THR A 27 REMARK 465 GLU A 28 REMARK 465 VAL A 29 REMARK 465 GLY A 79 REMARK 465 GLY A 80 REMARK 465 ASP A 81 REMARK 465 VAL A 82 REMARK 465 ILE A 83 REMARK 465 ALA A 84 REMARK 465 ASP A 85 REMARK 465 THR A 86 REMARK 465 THR A 87 REMARK 465 ILE A 88 REMARK 465 LYS A 89 REMARK 465 GLY B 0 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 THR B 27 REMARK 465 GLU B 28 REMARK 465 VAL B 29 REMARK 465 ASN B 78 REMARK 465 GLY B 79 REMARK 465 GLY B 80 REMARK 465 ASP B 81 REMARK 465 VAL B 82 REMARK 465 ILE B 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 78 CA C O CB CG OD1 ND2 REMARK 470 VAL A 90 CG1 CG2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 101 -91.57 -101.25 REMARK 500 PRO A 148 35.51 -77.82 REMARK 500 MSE A 170 -53.34 -129.50 REMARK 500 SER A 245 177.98 70.85 REMARK 500 ASP B 85 56.23 -104.06 REMARK 500 HIS B 101 -89.50 -105.94 REMARK 500 MSE B 170 -58.45 -128.24 REMARK 500 SER B 245 -172.01 65.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 259 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394756 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 24-258 OF THE TARGET REMARK 999 SEQUENCE. DBREF 3U1X A 24 258 UNP A6LD40 A6LD40_PARD8 24 258 DBREF 3U1X B 24 258 UNP A6LD40 A6LD40_PARD8 24 258 SEQADV 3U1X GLY A 0 UNP A6LD40 EXPRESSION TAG SEQADV 3U1X GLY B 0 UNP A6LD40 EXPRESSION TAG SEQRES 1 A 236 GLY SER SER SER THR GLU VAL LYS ASP ASN VAL LEU THR SEQRES 2 A 236 GLU GLU GLU LYS ALA GLU GLY TYR THR LEU LEU PHE ASN SEQRES 3 A 236 GLY LYS ASP PHE THR GLY TRP LYS MSE PHE ASN GLY GLY SEQRES 4 A 236 ASP VAL LYS GLY TRP GLN VAL GLU ASP GLY VAL ILE VAL SEQRES 5 A 236 GLY TYR GLY ASN GLY GLY ASP VAL ILE ALA ASP THR THR SEQRES 6 A 236 ILE LYS VAL SER THR ASP ILE VAL THR VAL LYS ASN TYR SEQRES 7 A 236 HIS ASN PHE GLN ILE LYS TRP ASP TRP LYS ILE GLY ALA SEQRES 8 A 236 GLN GLY ASN SER GLY PHE LEU TYR HIS VAL GLN GLU GLY SEQRES 9 A 236 PRO LYS TYR LYS ALA PRO PHE GLU THR GLY PRO GLU TYR SEQRES 10 A 236 GLN LEU ILE ASP ASP ASP ASN TYR PRO TRP VAL SER GLU SEQRES 11 A 236 THR GLY LYS GLU GLY LEU GLU ASP TRP GLN LYS THR GLY SEQRES 12 A 236 CYS ASN TYR ALA MSE TYR VAL PRO GLU THR LYS GLN VAL SEQRES 13 A 236 ASN PRO PRO GLY GLU TRP ASN SER SER MSE VAL LEU TYR SEQRES 14 A 236 LYS ASP GLY TYR VAL GLU HIS TRP LEU ASN GLY GLU LYS SEQRES 15 A 236 LEU PHE SER PHE GLN GLU GLY SER GLU ASP TRP LYS MSE SEQRES 16 A 236 ARG ARG TYR SER GLY LYS TRP GLU ALA PHE PRO ASP TYR SEQRES 17 A 236 GLY ILE SER THR THR GLY LYS LEU CYS PHE GLN ASP HIS SEQRES 18 A 236 GLY SER LYS VAL TYR PHE LYS ASN VAL LYS ILE LYS ASP SEQRES 19 A 236 LEU ASP SEQRES 1 B 236 GLY SER SER SER THR GLU VAL LYS ASP ASN VAL LEU THR SEQRES 2 B 236 GLU GLU GLU LYS ALA GLU GLY TYR THR LEU LEU PHE ASN SEQRES 3 B 236 GLY LYS ASP PHE THR GLY TRP LYS MSE PHE ASN GLY GLY SEQRES 4 B 236 ASP VAL LYS GLY TRP GLN VAL GLU ASP GLY VAL ILE VAL SEQRES 5 B 236 GLY TYR GLY ASN GLY GLY ASP VAL ILE ALA ASP THR THR SEQRES 6 B 236 ILE LYS VAL SER THR ASP ILE VAL THR VAL LYS ASN TYR SEQRES 7 B 236 HIS ASN PHE GLN ILE LYS TRP ASP TRP LYS ILE GLY ALA SEQRES 8 B 236 GLN GLY ASN SER GLY PHE LEU TYR HIS VAL GLN GLU GLY SEQRES 9 B 236 PRO LYS TYR LYS ALA PRO PHE GLU THR GLY PRO GLU TYR SEQRES 10 B 236 GLN LEU ILE ASP ASP ASP ASN TYR PRO TRP VAL SER GLU SEQRES 11 B 236 THR GLY LYS GLU GLY LEU GLU ASP TRP GLN LYS THR GLY SEQRES 12 B 236 CYS ASN TYR ALA MSE TYR VAL PRO GLU THR LYS GLN VAL SEQRES 13 B 236 ASN PRO PRO GLY GLU TRP ASN SER SER MSE VAL LEU TYR SEQRES 14 B 236 LYS ASP GLY TYR VAL GLU HIS TRP LEU ASN GLY GLU LYS SEQRES 15 B 236 LEU PHE SER PHE GLN GLU GLY SER GLU ASP TRP LYS MSE SEQRES 16 B 236 ARG ARG TYR SER GLY LYS TRP GLU ALA PHE PRO ASP TYR SEQRES 17 B 236 GLY ILE SER THR THR GLY LYS LEU CYS PHE GLN ASP HIS SEQRES 18 B 236 GLY SER LYS VAL TYR PHE LYS ASN VAL LYS ILE LYS ASP SEQRES 19 B 236 LEU ASP MODRES 3U1X MSE A 57 MET SELENOMETHIONINE MODRES 3U1X MSE A 170 MET SELENOMETHIONINE MODRES 3U1X MSE A 188 MET SELENOMETHIONINE MODRES 3U1X MSE A 217 MET SELENOMETHIONINE MODRES 3U1X MSE B 57 MET SELENOMETHIONINE MODRES 3U1X MSE B 170 MET SELENOMETHIONINE MODRES 3U1X MSE B 188 MET SELENOMETHIONINE MODRES 3U1X MSE B 217 MET SELENOMETHIONINE HET MSE A 57 13 HET MSE A 170 8 HET MSE A 188 13 HET MSE A 217 8 HET MSE B 57 13 HET MSE B 170 8 HET MSE B 188 13 HET MSE B 217 8 HET PGE A 260 10 HET PGE B 259 10 HETNAM MSE SELENOMETHIONINE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 PGE 2(C6 H14 O4) FORMUL 5 HOH *431(H2 O) HELIX 1 1 THR A 35 GLU A 41 1 7 HELIX 2 2 ALA A 131 THR A 135 5 5 HELIX 3 3 GLU A 159 LYS A 163 5 5 HELIX 4 4 SER A 212 GLY A 222 1 11 HELIX 5 5 THR B 35 GLY B 42 1 8 HELIX 6 6 ALA B 131 THR B 135 5 5 HELIX 7 7 GLU B 159 LYS B 163 5 5 HELIX 8 8 SER B 212 GLY B 222 1 11 SHEET 1 A 4 TYR A 43 LEU A 45 0 SHEET 2 A 4 VAL A 247 ASP A 256 -1 O ILE A 254 N THR A 44 SHEET 3 A 4 VAL A 72 GLY A 75 -1 N ILE A 73 O PHE A 249 SHEET 4 A 4 TRP A 66 GLU A 69 -1 N GLN A 67 O VAL A 74 SHEET 1 B 6 TYR A 43 LEU A 45 0 SHEET 2 B 6 VAL A 247 ASP A 256 -1 O ILE A 254 N THR A 44 SHEET 3 B 6 PHE A 103 ILE A 111 -1 N GLN A 104 O LYS A 255 SHEET 4 B 6 ASN A 185 LYS A 192 -1 O SER A 187 N TRP A 107 SHEET 5 B 6 TYR A 195 LEU A 200 -1 O TRP A 199 N MSE A 188 SHEET 6 B 6 GLU A 203 GLN A 209 -1 O PHE A 208 N VAL A 196 SHEET 1 C 5 TRP A 55 MSE A 57 0 SHEET 2 C 5 ILE A 94 THR A 96 -1 O VAL A 95 N LYS A 56 SHEET 3 C 5 LYS A 237 ASP A 242 -1 O LEU A 238 N THR A 96 SHEET 4 C 5 ASN A 116 VAL A 123 -1 N VAL A 123 O LYS A 237 SHEET 5 C 5 GLU A 138 ILE A 142 -1 O TYR A 139 N PHE A 119 SHEET 1 D 4 TYR B 43 LEU B 45 0 SHEET 2 D 4 VAL B 247 ASP B 256 -1 O ILE B 254 N THR B 44 SHEET 3 D 4 VAL B 72 GLY B 75 -1 N ILE B 73 O PHE B 249 SHEET 4 D 4 TRP B 66 GLU B 69 -1 N GLN B 67 O VAL B 74 SHEET 1 E 6 TYR B 43 LEU B 45 0 SHEET 2 E 6 VAL B 247 ASP B 256 -1 O ILE B 254 N THR B 44 SHEET 3 E 6 PHE B 103 ILE B 111 -1 N GLN B 104 O LYS B 255 SHEET 4 E 6 ASN B 185 LYS B 192 -1 O SER B 187 N TRP B 107 SHEET 5 E 6 TYR B 195 LEU B 200 -1 O TYR B 195 N LYS B 192 SHEET 6 E 6 GLU B 203 GLN B 209 -1 O PHE B 208 N VAL B 196 SHEET 1 F 5 TRP B 55 MSE B 57 0 SHEET 2 F 5 ILE B 94 THR B 96 -1 O VAL B 95 N LYS B 56 SHEET 3 F 5 LYS B 237 GLY B 244 -1 O LEU B 238 N THR B 96 SHEET 4 F 5 ASN B 116 VAL B 123 -1 N VAL B 123 O LYS B 237 SHEET 5 F 5 GLU B 138 ILE B 142 -1 O LEU B 141 N SER B 117 LINK C LYS A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N PHE A 58 1555 1555 1.33 LINK C ALA A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N TYR A 171 1555 1555 1.34 LINK C SER A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N VAL A 189 1555 1555 1.33 LINK C LYS A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N ARG A 218 1555 1555 1.33 LINK C LYS B 56 N MSE B 57 1555 1555 1.32 LINK C MSE B 57 N PHE B 58 1555 1555 1.33 LINK C ALA B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N TYR B 171 1555 1555 1.34 LINK C SER B 187 N MSE B 188 1555 1555 1.33 LINK C MSE B 188 N VAL B 189 1555 1555 1.33 LINK C LYS B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N ARG B 218 1555 1555 1.33 SITE 1 AC1 9 ASN A 116 GLU A 138 GLN A 140 TRP A 149 SITE 2 AC1 9 GLN A 162 TYR A 168 GLN A 241 HOH A 348 SITE 3 AC1 9 HOH A 469 SITE 1 AC2 8 VAL A 68 GLU A 69 ASP A 70 LYS B 110 SITE 2 AC2 8 GLY B 182 TRP B 184 TYR B 248 HOH B 556 CRYST1 38.690 41.214 77.324 92.98 91.64 117.97 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025846 0.013726 0.001760 0.00000 SCALE2 0.000000 0.027473 0.002040 0.00000 SCALE3 0.000000 0.000000 0.012974 0.00000