data_3U21 # _entry.id 3U21 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3U21 pdb_00003u21 10.2210/pdb3u21/pdb RCSB RCSB068206 ? ? WWPDB D_1000068206 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2011-11-02 ? 2 'Structure model' 1 1 2012-10-10 ? 3 'Structure model' 1 2 2017-11-08 ? 4 'Structure model' 1 3 2023-02-01 ? 5 'Structure model' 1 4 2025-10-22 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' audit_author 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' pdbx_entry_details 11 5 'Structure model' pdbx_modification_feature 12 5 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_ref_seq_dif.details' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 40 5 'Structure model' '_pdbx_entry_details.has_protein_modification' 41 5 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 42 5 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 43 5 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 44 5 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 45 5 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 46 5 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 47 5 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 48 5 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3U21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 421522 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Joint Center for Structural Genomics (JCSG)' 1 ? 'Partnership for Stem Cell Biology (STEMCELL)' 2 ? # _citation.id primary _citation.title 'Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e43761 _citation.page_last e43761 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22984442 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0043761 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, A.' 1 ? primary 'Mocklinghoff, S.' 2 ? primary 'Yumoto, F.' 3 ? primary 'Jaroszewski, L.' 4 ? primary 'Farr, C.L.' 5 ? primary 'Grzechnik, A.' 6 ? primary 'Nguyen, P.' 7 ? primary 'Weichenberger, C.X.' 8 ? primary 'Chiu, H.J.' 9 ? primary 'Klock, H.E.' 10 ? primary 'Elsliger, M.A.' 11 ? primary 'Deacon, A.M.' 12 ? primary 'Godzik, A.' 13 ? primary 'Lesley, S.A.' 14 ? primary 'Conklin, B.R.' 15 ? primary 'Fletterick, R.J.' 16 ? primary 'Wilson, I.A.' 17 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nuclear factor related to kappa-B-binding protein' 14504.097 2 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNA-binding protein R kappa-B, INO80 complex subunit G' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GLGINEISSSFFSLLLEILLLESQASLP(MSE)LEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSS FSPFVEF(MLY)E(MLY)TQQW(MLY)LLGQSQDNE(MLY)ELAALFQLWLET(MLY)DQAFC(MLY)QENEDSS ; _entity_poly.pdbx_seq_one_letter_code_can ;GLGINEISSSFFSLLLEILLLESQASLPMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSSFSPF VEFKEKTQQWKLLGQSQDNEKELAALFQLWLETKDQAFCKQENEDSS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 421522 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 GLY n 1 4 ILE n 1 5 ASN n 1 6 GLU n 1 7 ILE n 1 8 SER n 1 9 SER n 1 10 SER n 1 11 PHE n 1 12 PHE n 1 13 SER n 1 14 LEU n 1 15 LEU n 1 16 LEU n 1 17 GLU n 1 18 ILE n 1 19 LEU n 1 20 LEU n 1 21 LEU n 1 22 GLU n 1 23 SER n 1 24 GLN n 1 25 ALA n 1 26 SER n 1 27 LEU n 1 28 PRO n 1 29 MSE n 1 30 LEU n 1 31 GLU n 1 32 GLU n 1 33 ARG n 1 34 VAL n 1 35 LEU n 1 36 ASP n 1 37 TRP n 1 38 GLN n 1 39 SER n 1 40 SER n 1 41 PRO n 1 42 ALA n 1 43 SER n 1 44 SER n 1 45 LEU n 1 46 ASN n 1 47 SER n 1 48 TRP n 1 49 PHE n 1 50 SER n 1 51 ALA n 1 52 ALA n 1 53 PRO n 1 54 ASN n 1 55 TRP n 1 56 ALA n 1 57 GLU n 1 58 LEU n 1 59 VAL n 1 60 LEU n 1 61 PRO n 1 62 ALA n 1 63 LEU n 1 64 GLN n 1 65 TYR n 1 66 LEU n 1 67 ALA n 1 68 GLY n 1 69 GLU n 1 70 SER n 1 71 ARG n 1 72 ALA n 1 73 VAL n 1 74 PRO n 1 75 SER n 1 76 SER n 1 77 PHE n 1 78 SER n 1 79 PRO n 1 80 PHE n 1 81 VAL n 1 82 GLU n 1 83 PHE n 1 84 MLY n 1 85 GLU n 1 86 MLY n 1 87 THR n 1 88 GLN n 1 89 GLN n 1 90 TRP n 1 91 MLY n 1 92 LEU n 1 93 LEU n 1 94 GLY n 1 95 GLN n 1 96 SER n 1 97 GLN n 1 98 ASP n 1 99 ASN n 1 100 GLU n 1 101 MLY n 1 102 GLU n 1 103 LEU n 1 104 ALA n 1 105 ALA n 1 106 LEU n 1 107 PHE n 1 108 GLN n 1 109 LEU n 1 110 TRP n 1 111 LEU n 1 112 GLU n 1 113 THR n 1 114 MLY n 1 115 ASP n 1 116 GLN n 1 117 ALA n 1 118 PHE n 1 119 CYS n 1 120 MLY n 1 121 GLN n 1 122 GLU n 1 123 ASN n 1 124 GLU n 1 125 ASP n 1 126 SER n 1 127 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC063280, INO80G, NFRKB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 LEU 2 370 ? ? ? A . n A 1 3 GLY 3 371 ? ? ? A . n A 1 4 ILE 4 372 372 ILE ILE A . n A 1 5 ASN 5 373 373 ASN ASN A . n A 1 6 GLU 6 374 374 GLU GLU A . n A 1 7 ILE 7 375 375 ILE ILE A . n A 1 8 SER 8 376 376 SER SER A . n A 1 9 SER 9 377 377 SER SER A . n A 1 10 SER 10 378 378 SER SER A . n A 1 11 PHE 11 379 379 PHE PHE A . n A 1 12 PHE 12 380 380 PHE PHE A . n A 1 13 SER 13 381 381 SER SER A . n A 1 14 LEU 14 382 382 LEU LEU A . n A 1 15 LEU 15 383 383 LEU LEU A . n A 1 16 LEU 16 384 384 LEU LEU A . n A 1 17 GLU 17 385 385 GLU GLU A . n A 1 18 ILE 18 386 386 ILE ILE A . n A 1 19 LEU 19 387 387 LEU LEU A . n A 1 20 LEU 20 388 388 LEU LEU A . n A 1 21 LEU 21 389 389 LEU LEU A . n A 1 22 GLU 22 390 390 GLU GLU A . n A 1 23 SER 23 391 391 SER SER A . n A 1 24 GLN 24 392 392 GLN GLN A . n A 1 25 ALA 25 393 393 ALA ALA A . n A 1 26 SER 26 394 394 SER SER A . n A 1 27 LEU 27 395 395 LEU LEU A . n A 1 28 PRO 28 396 396 PRO PRO A . n A 1 29 MSE 29 397 397 MSE MSE A . n A 1 30 LEU 30 398 398 LEU LEU A . n A 1 31 GLU 31 399 399 GLU GLU A . n A 1 32 GLU 32 400 400 GLU GLU A . n A 1 33 ARG 33 401 401 ARG ARG A . n A 1 34 VAL 34 402 402 VAL VAL A . n A 1 35 LEU 35 403 403 LEU LEU A . n A 1 36 ASP 36 404 404 ASP ASP A . n A 1 37 TRP 37 405 405 TRP TRP A . n A 1 38 GLN 38 406 406 GLN GLN A . n A 1 39 SER 39 407 407 SER SER A . n A 1 40 SER 40 408 408 SER SER A . n A 1 41 PRO 41 409 409 PRO PRO A . n A 1 42 ALA 42 410 410 ALA ALA A . n A 1 43 SER 43 411 411 SER SER A . n A 1 44 SER 44 412 412 SER SER A . n A 1 45 LEU 45 413 413 LEU LEU A . n A 1 46 ASN 46 414 414 ASN ASN A . n A 1 47 SER 47 415 415 SER SER A . n A 1 48 TRP 48 416 416 TRP TRP A . n A 1 49 PHE 49 417 417 PHE PHE A . n A 1 50 SER 50 418 418 SER SER A . n A 1 51 ALA 51 419 419 ALA ALA A . n A 1 52 ALA 52 420 420 ALA ALA A . n A 1 53 PRO 53 421 421 PRO PRO A . n A 1 54 ASN 54 422 422 ASN ASN A . n A 1 55 TRP 55 423 423 TRP TRP A . n A 1 56 ALA 56 424 424 ALA ALA A . n A 1 57 GLU 57 425 425 GLU GLU A . n A 1 58 LEU 58 426 426 LEU LEU A . n A 1 59 VAL 59 427 427 VAL VAL A . n A 1 60 LEU 60 428 428 LEU LEU A . n A 1 61 PRO 61 429 429 PRO PRO A . n A 1 62 ALA 62 430 430 ALA ALA A . n A 1 63 LEU 63 431 431 LEU LEU A . n A 1 64 GLN 64 432 432 GLN GLN A . n A 1 65 TYR 65 433 433 TYR TYR A . n A 1 66 LEU 66 434 434 LEU LEU A . n A 1 67 ALA 67 435 435 ALA ALA A . n A 1 68 GLY 68 436 436 GLY GLY A . n A 1 69 GLU 69 437 437 GLU GLU A . n A 1 70 SER 70 438 438 SER SER A . n A 1 71 ARG 71 439 439 ARG ARG A . n A 1 72 ALA 72 440 440 ALA ALA A . n A 1 73 VAL 73 441 441 VAL VAL A . n A 1 74 PRO 74 442 442 PRO PRO A . n A 1 75 SER 75 443 443 SER SER A . n A 1 76 SER 76 444 444 SER SER A . n A 1 77 PHE 77 445 445 PHE PHE A . n A 1 78 SER 78 446 446 SER SER A . n A 1 79 PRO 79 447 447 PRO PRO A . n A 1 80 PHE 80 448 448 PHE PHE A . n A 1 81 VAL 81 449 449 VAL VAL A . n A 1 82 GLU 82 450 450 GLU GLU A . n A 1 83 PHE 83 451 451 PHE PHE A . n A 1 84 MLY 84 452 452 MLY MLY A . n A 1 85 GLU 85 453 453 GLU GLU A . n A 1 86 MLY 86 454 454 MLY MLY A . n A 1 87 THR 87 455 455 THR THR A . n A 1 88 GLN 88 456 456 GLN GLN A . n A 1 89 GLN 89 457 457 GLN GLN A . n A 1 90 TRP 90 458 458 TRP TRP A . n A 1 91 MLY 91 459 459 MLY MLY A . n A 1 92 LEU 92 460 460 LEU LEU A . n A 1 93 LEU 93 461 461 LEU LEU A . n A 1 94 GLY 94 462 462 GLY GLY A . n A 1 95 GLN 95 463 ? ? ? A . n A 1 96 SER 96 464 ? ? ? A . n A 1 97 GLN 97 465 ? ? ? A . n A 1 98 ASP 98 466 466 ASP ASP A . n A 1 99 ASN 99 467 467 ASN ASN A . n A 1 100 GLU 100 468 468 GLU GLU A . n A 1 101 MLY 101 469 469 MLY MLY A . n A 1 102 GLU 102 470 470 GLU GLU A . n A 1 103 LEU 103 471 471 LEU LEU A . n A 1 104 ALA 104 472 472 ALA ALA A . n A 1 105 ALA 105 473 473 ALA ALA A . n A 1 106 LEU 106 474 474 LEU LEU A . n A 1 107 PHE 107 475 475 PHE PHE A . n A 1 108 GLN 108 476 476 GLN GLN A . n A 1 109 LEU 109 477 477 LEU LEU A . n A 1 110 TRP 110 478 478 TRP TRP A . n A 1 111 LEU 111 479 479 LEU LEU A . n A 1 112 GLU 112 480 480 GLU GLU A . n A 1 113 THR 113 481 481 THR THR A . n A 1 114 MLY 114 482 482 MLY MLY A . n A 1 115 ASP 115 483 483 ASP ASP A . n A 1 116 GLN 116 484 ? ? ? A . n A 1 117 ALA 117 485 ? ? ? A . n A 1 118 PHE 118 486 ? ? ? A . n A 1 119 CYS 119 487 ? ? ? A . n A 1 120 MLY 120 488 ? ? ? A . n A 1 121 GLN 121 489 ? ? ? A . n A 1 122 GLU 122 490 ? ? ? A . n A 1 123 ASN 123 491 ? ? ? A . n A 1 124 GLU 124 492 ? ? ? A . n A 1 125 ASP 125 493 ? ? ? A . n A 1 126 SER 126 494 ? ? ? A . n A 1 127 SER 127 495 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 LEU 2 370 370 LEU LEU B . n B 1 3 GLY 3 371 371 GLY GLY B . n B 1 4 ILE 4 372 372 ILE ILE B . n B 1 5 ASN 5 373 373 ASN ASN B . n B 1 6 GLU 6 374 374 GLU GLU B . n B 1 7 ILE 7 375 375 ILE ILE B . n B 1 8 SER 8 376 376 SER SER B . n B 1 9 SER 9 377 377 SER SER B . n B 1 10 SER 10 378 378 SER SER B . n B 1 11 PHE 11 379 379 PHE PHE B . n B 1 12 PHE 12 380 380 PHE PHE B . n B 1 13 SER 13 381 381 SER SER B . n B 1 14 LEU 14 382 382 LEU LEU B . n B 1 15 LEU 15 383 383 LEU LEU B . n B 1 16 LEU 16 384 384 LEU LEU B . n B 1 17 GLU 17 385 385 GLU GLU B . n B 1 18 ILE 18 386 386 ILE ILE B . n B 1 19 LEU 19 387 387 LEU LEU B . n B 1 20 LEU 20 388 388 LEU LEU B . n B 1 21 LEU 21 389 389 LEU LEU B . n B 1 22 GLU 22 390 390 GLU GLU B . n B 1 23 SER 23 391 391 SER SER B . n B 1 24 GLN 24 392 392 GLN GLN B . n B 1 25 ALA 25 393 393 ALA ALA B . n B 1 26 SER 26 394 394 SER SER B . n B 1 27 LEU 27 395 395 LEU LEU B . n B 1 28 PRO 28 396 396 PRO PRO B . n B 1 29 MSE 29 397 397 MSE MSE B . n B 1 30 LEU 30 398 398 LEU LEU B . n B 1 31 GLU 31 399 399 GLU GLU B . n B 1 32 GLU 32 400 400 GLU GLU B . n B 1 33 ARG 33 401 401 ARG ARG B . n B 1 34 VAL 34 402 402 VAL VAL B . n B 1 35 LEU 35 403 403 LEU LEU B . n B 1 36 ASP 36 404 404 ASP ASP B . n B 1 37 TRP 37 405 405 TRP TRP B . n B 1 38 GLN 38 406 406 GLN GLN B . n B 1 39 SER 39 407 407 SER SER B . n B 1 40 SER 40 408 408 SER SER B . n B 1 41 PRO 41 409 409 PRO PRO B . n B 1 42 ALA 42 410 410 ALA ALA B . n B 1 43 SER 43 411 411 SER SER B . n B 1 44 SER 44 412 412 SER SER B . n B 1 45 LEU 45 413 413 LEU LEU B . n B 1 46 ASN 46 414 414 ASN ASN B . n B 1 47 SER 47 415 415 SER SER B . n B 1 48 TRP 48 416 416 TRP TRP B . n B 1 49 PHE 49 417 417 PHE PHE B . n B 1 50 SER 50 418 418 SER SER B . n B 1 51 ALA 51 419 419 ALA ALA B . n B 1 52 ALA 52 420 420 ALA ALA B . n B 1 53 PRO 53 421 421 PRO PRO B . n B 1 54 ASN 54 422 422 ASN ASN B . n B 1 55 TRP 55 423 423 TRP TRP B . n B 1 56 ALA 56 424 424 ALA ALA B . n B 1 57 GLU 57 425 425 GLU GLU B . n B 1 58 LEU 58 426 426 LEU LEU B . n B 1 59 VAL 59 427 427 VAL VAL B . n B 1 60 LEU 60 428 428 LEU LEU B . n B 1 61 PRO 61 429 429 PRO PRO B . n B 1 62 ALA 62 430 430 ALA ALA B . n B 1 63 LEU 63 431 431 LEU LEU B . n B 1 64 GLN 64 432 432 GLN GLN B . n B 1 65 TYR 65 433 433 TYR TYR B . n B 1 66 LEU 66 434 434 LEU LEU B . n B 1 67 ALA 67 435 435 ALA ALA B . n B 1 68 GLY 68 436 436 GLY GLY B . n B 1 69 GLU 69 437 437 GLU GLU B . n B 1 70 SER 70 438 438 SER SER B . n B 1 71 ARG 71 439 439 ARG ARG B . n B 1 72 ALA 72 440 ? ? ? B . n B 1 73 VAL 73 441 ? ? ? B . n B 1 74 PRO 74 442 ? ? ? B . n B 1 75 SER 75 443 ? ? ? B . n B 1 76 SER 76 444 444 SER SER B . n B 1 77 PHE 77 445 445 PHE PHE B . n B 1 78 SER 78 446 446 SER SER B . n B 1 79 PRO 79 447 447 PRO PRO B . n B 1 80 PHE 80 448 448 PHE PHE B . n B 1 81 VAL 81 449 449 VAL VAL B . n B 1 82 GLU 82 450 450 GLU GLU B . n B 1 83 PHE 83 451 451 PHE PHE B . n B 1 84 MLY 84 452 452 MLY MLY B . n B 1 85 GLU 85 453 453 GLU GLU B . n B 1 86 MLY 86 454 454 MLY MLY B . n B 1 87 THR 87 455 455 THR THR B . n B 1 88 GLN 88 456 456 GLN GLN B . n B 1 89 GLN 89 457 457 GLN GLN B . n B 1 90 TRP 90 458 458 TRP TRP B . n B 1 91 MLY 91 459 459 MLY MLY B . n B 1 92 LEU 92 460 460 LEU LEU B . n B 1 93 LEU 93 461 461 LEU LEU B . n B 1 94 GLY 94 462 ? ? ? B . n B 1 95 GLN 95 463 ? ? ? B . n B 1 96 SER 96 464 464 SER SER B . n B 1 97 GLN 97 465 465 GLN GLN B . n B 1 98 ASP 98 466 466 ASP ASP B . n B 1 99 ASN 99 467 467 ASN ASN B . n B 1 100 GLU 100 468 468 GLU GLU B . n B 1 101 MLY 101 469 469 MLY MLY B . n B 1 102 GLU 102 470 470 GLU GLU B . n B 1 103 LEU 103 471 471 LEU LEU B . n B 1 104 ALA 104 472 472 ALA ALA B . n B 1 105 ALA 105 473 473 ALA ALA B . n B 1 106 LEU 106 474 474 LEU LEU B . n B 1 107 PHE 107 475 475 PHE PHE B . n B 1 108 GLN 108 476 476 GLN GLN B . n B 1 109 LEU 109 477 477 LEU LEU B . n B 1 110 TRP 110 478 478 TRP TRP B . n B 1 111 LEU 111 479 479 LEU LEU B . n B 1 112 GLU 112 480 480 GLU GLU B . n B 1 113 THR 113 481 481 THR THR B . n B 1 114 MLY 114 482 482 MLY MLY B . n B 1 115 ASP 115 483 483 ASP ASP B . n B 1 116 GLN 116 484 ? ? ? B . n B 1 117 ALA 117 485 ? ? ? B . n B 1 118 PHE 118 486 ? ? ? B . n B 1 119 CYS 119 487 ? ? ? B . n B 1 120 MLY 120 488 ? ? ? B . n B 1 121 GLN 121 489 ? ? ? B . n B 1 122 GLU 122 490 ? ? ? B . n B 1 123 ASN 123 491 ? ? ? B . n B 1 124 GLU 124 492 ? ? ? B . n B 1 125 ASP 125 493 ? ? ? B . n B 1 126 SER 126 494 ? ? ? B . n B 1 127 SER 127 495 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 500 500 NA NA A . D 3 HOH 1 501 501 HOH HOH A . D 3 HOH 2 502 502 HOH HOH A . D 3 HOH 3 503 503 HOH HOH A . D 3 HOH 4 504 504 HOH HOH A . D 3 HOH 5 505 505 HOH HOH A . D 3 HOH 6 506 506 HOH HOH A . D 3 HOH 7 507 507 HOH HOH A . D 3 HOH 8 508 508 HOH HOH A . D 3 HOH 9 509 509 HOH HOH A . D 3 HOH 10 511 511 HOH HOH A . D 3 HOH 11 523 523 HOH HOH A . D 3 HOH 12 524 524 HOH HOH A . D 3 HOH 13 525 525 HOH HOH A . E 3 HOH 1 510 510 HOH HOH B . E 3 HOH 2 512 512 HOH HOH B . E 3 HOH 3 513 513 HOH HOH B . E 3 HOH 4 514 514 HOH HOH B . E 3 HOH 5 515 515 HOH HOH B . E 3 HOH 6 516 516 HOH HOH B . E 3 HOH 7 517 517 HOH HOH B . E 3 HOH 8 518 518 HOH HOH B . E 3 HOH 9 519 519 HOH HOH B . E 3 HOH 10 520 520 HOH HOH B . E 3 HOH 11 521 521 HOH HOH B . E 3 HOH 12 522 522 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 439 ? CG ? A ARG 71 CG 2 1 Y 1 A ARG 439 ? CD ? A ARG 71 CD 3 1 Y 1 A ARG 439 ? NE ? A ARG 71 NE 4 1 Y 1 A ARG 439 ? CZ ? A ARG 71 CZ 5 1 Y 1 A ARG 439 ? NH1 ? A ARG 71 NH1 6 1 Y 1 A ARG 439 ? NH2 ? A ARG 71 NH2 7 1 Y 1 A MLY 454 ? CG ? A MLY 86 CG 8 1 Y 1 A MLY 454 ? CD ? A MLY 86 CD 9 1 Y 1 A MLY 454 ? CE ? A MLY 86 CE 10 1 Y 1 A MLY 454 ? NZ ? A MLY 86 NZ 11 1 Y 1 A MLY 454 ? CH1 ? A MLY 86 CH1 12 1 Y 1 A MLY 454 ? CH2 ? A MLY 86 CH2 13 1 Y 1 B ILE 372 ? CG1 ? B ILE 4 CG1 14 1 Y 1 B ILE 372 ? CG2 ? B ILE 4 CG2 15 1 Y 1 B ILE 372 ? CD1 ? B ILE 4 CD1 16 1 Y 1 B ARG 439 ? CG ? B ARG 71 CG 17 1 Y 1 B ARG 439 ? CD ? B ARG 71 CD 18 1 Y 1 B ARG 439 ? NE ? B ARG 71 NE 19 1 Y 1 B ARG 439 ? CZ ? B ARG 71 CZ 20 1 Y 1 B ARG 439 ? NH1 ? B ARG 71 NH1 21 1 Y 1 B ARG 439 ? NH2 ? B ARG 71 NH2 22 1 Y 1 B MLY 454 ? CG ? B MLY 86 CG 23 1 Y 1 B MLY 454 ? CD ? B MLY 86 CD 24 1 Y 1 B MLY 454 ? CE ? B MLY 86 CE 25 1 Y 1 B MLY 454 ? NZ ? B MLY 86 NZ 26 1 Y 1 B MLY 454 ? CH1 ? B MLY 86 CH1 27 1 Y 1 B MLY 454 ? CH2 ? B MLY 86 CH2 28 1 Y 1 B GLN 465 ? CG ? B GLN 97 CG 29 1 Y 1 B GLN 465 ? CD ? B GLN 97 CD 30 1 Y 1 B GLN 465 ? OE1 ? B GLN 97 OE1 31 1 Y 1 B GLN 465 ? NE2 ? B GLN 97 NE2 32 1 Y 1 B ASP 483 ? CG ? B ASP 115 CG 33 1 Y 1 B ASP 483 ? OD1 ? B ASP 115 OD1 34 1 Y 1 B ASP 483 ? OD2 ? B ASP 115 OD2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.6.0116 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _cell.entry_id 3U21 _cell.length_a 60.942 _cell.length_b 60.942 _cell.length_c 130.839 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U21 _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3U21 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.09M HEPES pH 7.5, 10% glycerol, 1.26M tri-sodium citrate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2011-06-22 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97936 1.0 3 0.97915 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97936,0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3U21 _reflns.d_resolution_high 2.18 _reflns.d_resolution_low 35.466 _reflns.number_obs 13560 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 20.780 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 41.259 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.180 2.260 9710 ? 1360 0.796 2.4 ? ? ? ? ? 99.900 1 1 2.260 2.350 9264 ? 1298 0.624 3.1 ? ? ? ? ? 99.800 2 1 2.350 2.450 8939 ? 1247 0.506 3.8 ? ? ? ? ? 100.000 3 1 2.450 2.580 9488 ? 1332 0.365 5.3 ? ? ? ? ? 100.000 4 1 2.580 2.750 10006 ? 1409 0.248 7.9 ? ? ? ? ? 100.000 5 1 2.750 2.960 9368 ? 1322 0.152 12.2 ? ? ? ? ? 100.000 6 1 2.960 3.250 9300 ? 1316 0.101 18.1 ? ? ? ? ? 100.000 7 1 3.250 3.720 9515 ? 1369 0.047 35.2 ? ? ? ? ? 99.900 8 1 3.720 4.680 9606 ? 1407 0.029 53.2 ? ? ? ? ? 99.900 9 1 4.680 ? 9421 ? 1500 0.024 58.9 ? ? ? ? ? 98.300 10 1 # _refine.entry_id 3U21 _refine.ls_d_res_high 2.1800 _refine.ls_d_res_low 35.466 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7500 _refine.ls_number_reflns_obs 13504 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. SODIUM ION (NA) FROM CRYSTALLIZATION CONDITION WAS MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2324 _refine.ls_R_factor_R_work 0.2305 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2695 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 662 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 46.2329 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.2100 _refine.aniso_B[2][2] -0.2100 _refine.aniso_B[3][3] 0.4300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9290 _refine.correlation_coeff_Fo_to_Fc_free 0.9050 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.2220 _refine.overall_SU_ML 0.1560 _refine.overall_SU_B 12.5180 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 97.070 _refine.B_iso_min 25.430 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1732 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1758 _refine_hist.d_res_high 2.1800 _refine_hist.d_res_low 35.466 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1780 0.012 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1163 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2425 1.252 1.978 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2861 0.866 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 214 5.482 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 77 37.308 26.104 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 301 15.037 15.133 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 2 7.053 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 279 0.070 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1922 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 338 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_it 1780 2.782 3.895 ? ? 'X-RAY DIFFRACTION' r_bond_other 1163 0.478 3.917 ? ? 'X-RAY DIFFRACTION' r_angle_it 2424 4.176 8.643 ? ? 'X-RAY DIFFRACTION' r_angle_others 2861 2.448 8.825 ? ? 'X-RAY DIFFRACTION' r_torsion_it 594 6.824 17.777 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 1360 0.230 0.500 1 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 1360 2.310 2.000 2 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 2.1800 _refine_ls_shell.d_res_low 2.2360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8800 _refine_ls_shell.number_reflns_R_work 809 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2520 _refine_ls_shell.R_factor_R_free 0.2890 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 849 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A ILE 4 . A GLU 69 . A ILE 372 A GLU 437 4 ? 1 2 1 B ILE 4 . B GLU 69 . B ILE 372 B GLU 437 4 ? 1 1 2 A PHE 77 . A ASP 115 . A PHE 445 A ASP 483 4 ? 1 2 2 B PHE 77 . B ASP 115 . B PHE 445 B ASP 483 4 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3U21 _struct.title ;Crystal structure of a Fragment of Nuclear factor related to kappa-B-binding protein (residues 370-495) (NFRKB) from Homo sapiens at 2.18 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;DNA/RNA-binding 3-helical bundle, winged-HTH domain, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, Transcription regulation, DNA BINDING PROTEIN, DNA BINDING, Partnership for Stem Cell Biology, STEMCELL ; _struct_keywords.pdbx_keywords 'Transcription regulation, DNA BINDING' _struct_keywords.entry_id 3U21 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NFRKB_HUMAN _struct_ref.pdbx_db_accession Q6P4R8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LGINEISSSFFSLLLEILLLESQASLPMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSSFSPFV EFKEKTQQWKLLGQSQDNEKELAALFQLWLETKDQAFCKQENEDSS ; _struct_ref.pdbx_align_begin 370 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U21 A 2 ? 127 ? Q6P4R8 370 ? 495 ? 370 495 2 1 3U21 B 2 ? 127 ? Q6P4R8 370 ? 495 ? 370 495 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3U21 GLY A 1 ? UNP Q6P4R8 ? ? 'expression tag' 0 1 2 3U21 GLY B 1 ? UNP Q6P4R8 ? ? 'expression tag' 0 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -23 ? 1 'SSA (A^2)' 11610 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? LEU A 21 ? SER A 378 LEU A 389 1 ? 12 HELX_P HELX_P2 2 LEU A 27 ? SER A 39 ? LEU A 395 SER A 407 1 ? 13 HELX_P HELX_P3 3 SER A 40 ? ASN A 46 ? SER A 408 ASN A 414 5 ? 7 HELX_P HELX_P4 4 TRP A 48 ? ALA A 52 ? TRP A 416 ALA A 420 5 ? 5 HELX_P HELX_P5 5 TRP A 55 ? GLU A 57 ? TRP A 423 GLU A 425 5 ? 3 HELX_P HELX_P6 6 LEU A 58 ? ALA A 67 ? LEU A 426 ALA A 435 1 ? 10 HELX_P HELX_P7 7 ASN A 99 ? MLY A 114 ? ASN A 467 MLY A 482 1 ? 16 HELX_P HELX_P8 8 SER B 10 ? SER B 23 ? SER B 378 SER B 391 1 ? 14 HELX_P HELX_P9 9 SER B 26 ? SER B 40 ? SER B 394 SER B 408 1 ? 15 HELX_P HELX_P10 10 PRO B 41 ? ASN B 46 ? PRO B 409 ASN B 414 5 ? 6 HELX_P HELX_P11 11 TRP B 48 ? ALA B 52 ? TRP B 416 ALA B 420 5 ? 5 HELX_P HELX_P12 12 ASN B 54 ? GLU B 57 ? ASN B 422 GLU B 425 5 ? 4 HELX_P HELX_P13 13 LEU B 58 ? ALA B 67 ? LEU B 426 ALA B 435 1 ? 10 HELX_P HELX_P14 14 ASN B 99 ? MLY B 114 ? ASN B 467 MLY B 482 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 28 C ? ? ? 1_555 A MSE 29 N ? ? A PRO 396 A MSE 397 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A MSE 29 C ? ? ? 1_555 A LEU 30 N ? ? A MSE 397 A LEU 398 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A PHE 83 C ? ? ? 1_555 A MLY 84 N ? ? A PHE 451 A MLY 452 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MLY 84 C ? ? ? 1_555 A GLU 85 N ? ? A MLY 452 A GLU 453 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A GLU 85 C ? ? ? 1_555 A MLY 86 N ? ? A GLU 453 A MLY 454 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A MLY 86 C ? ? ? 1_555 A THR 87 N ? ? A MLY 454 A THR 455 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale7 covale both ? A TRP 90 C ? ? ? 1_555 A MLY 91 N ? ? A TRP 458 A MLY 459 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale8 covale both ? A MLY 91 C ? ? ? 1_555 A LEU 92 N ? ? A MLY 459 A LEU 460 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A GLU 100 C ? ? ? 1_555 A MLY 101 N ? ? A GLU 468 A MLY 469 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? A MLY 101 C ? ? ? 1_555 A GLU 102 N ? ? A MLY 469 A GLU 470 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? A THR 113 C ? ? ? 1_555 A MLY 114 N ? ? A THR 481 A MLY 482 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? A MLY 114 C ? ? ? 1_555 A ASP 115 N ? ? A MLY 482 A ASP 483 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale13 covale both ? B PRO 28 C ? ? ? 1_555 B MSE 29 N ? ? B PRO 396 B MSE 397 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? B MSE 29 C ? ? ? 1_555 B LEU 30 N ? ? B MSE 397 B LEU 398 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale15 covale both ? B PHE 83 C ? ? ? 1_555 B MLY 84 N ? ? B PHE 451 B MLY 452 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? B MLY 84 C ? ? ? 1_555 B GLU 85 N ? ? B MLY 452 B GLU 453 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale17 covale both ? B GLU 85 C ? ? ? 1_555 B MLY 86 N ? ? B GLU 453 B MLY 454 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale18 covale both ? B MLY 86 C ? ? ? 1_555 B THR 87 N ? ? B MLY 454 B THR 455 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale19 covale both ? B TRP 90 C ? ? ? 1_555 B MLY 91 N ? ? B TRP 458 B MLY 459 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale20 covale both ? B MLY 91 C ? ? ? 1_555 B LEU 92 N ? ? B MLY 459 B LEU 460 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale21 covale both ? B GLU 100 C ? ? ? 1_555 B MLY 101 N ? ? B GLU 468 B MLY 469 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale22 covale both ? B MLY 101 C ? ? ? 1_555 B GLU 102 N ? ? B MLY 469 B GLU 470 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale23 covale both ? B THR 113 C ? ? ? 1_555 B MLY 114 N ? ? B THR 481 B MLY 482 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale24 covale both ? B MLY 114 C ? ? ? 1_555 B ASP 115 N ? ? B MLY 482 B ASP 483 1_555 ? ? ? ? ? ? ? 1.331 ? ? metalc1 metalc ? ? A ASN 5 OD1 ? ? ? 1_555 C NA . NA ? ? A ASN 373 A NA 500 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc2 metalc ? ? A ILE 7 O ? ? ? 1_555 C NA . NA ? ? A ILE 375 A NA 500 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc3 metalc ? ? C NA . NA ? ? ? 1_555 B ASN 5 OD1 ? ? A NA 500 B ASN 373 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 B ILE 7 O ? ? A NA 500 B ILE 375 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 500 B HOH 521 1_555 ? ? ? ? ? ? ? 2.273 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? A ILE 7 ? A ILE 375 ? 1_555 91.6 ? 2 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 171.4 ? 3 O ? A ILE 7 ? A ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 88.2 ? 4 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? B ILE 7 ? B ILE 375 ? 1_555 94.2 ? 5 O ? A ILE 7 ? A ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? B ILE 7 ? B ILE 375 ? 1_555 102.9 ? 6 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? B ILE 7 ? B ILE 375 ? 1_555 94.3 ? 7 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 94.7 ? 8 O ? A ILE 7 ? A ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 164.8 ? 9 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 83.5 ? 10 O ? B ILE 7 ? B ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 90.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 29 ? . . . . MSE A 397 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MLY A 84 ? . . . . MLY A 452 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 3 MLY A 86 ? . . . . MLY A 454 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 4 MLY A 91 ? . . . . MLY A 459 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 5 MLY A 101 ? . . . . MLY A 469 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 6 MLY A 114 ? . . . . MLY A 482 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 7 MSE B 29 ? . . . . MSE B 397 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MLY B 84 ? . . . . MLY B 452 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 9 MLY B 86 ? . . . . MLY B 454 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 10 MLY B 91 ? . . . . MLY B 459 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 11 MLY B 101 ? . . . . MLY B 469 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 12 MLY B 114 ? . . . . MLY B 482 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 24 ? SER A 26 ? GLN A 392 SER A 394 A 2 GLN A 89 ? LEU A 92 ? GLN A 457 LEU A 460 A 3 VAL A 81 ? MLY A 84 ? VAL A 449 MLY A 452 B 1 GLN B 24 ? ALA B 25 ? GLN B 392 ALA B 393 B 2 GLN B 89 ? LEU B 92 ? GLN B 457 LEU B 460 B 3 VAL B 81 ? MLY B 84 ? VAL B 449 MLY B 452 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 25 ? N ALA A 393 O TRP A 90 ? O TRP A 458 A 2 3 O MLY A 91 ? O MLY A 459 N GLU A 82 ? N GLU A 450 B 1 2 N ALA B 25 ? N ALA B 393 O TRP B 90 ? O TRP B 458 B 2 3 O MLY B 91 ? O MLY B 459 N GLU B 82 ? N GLU B 450 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 500 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE NA A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 5 ? ASN A 373 . ? 1_555 ? 2 AC1 5 ILE A 7 ? ILE A 375 . ? 1_555 ? 3 AC1 5 ASN B 5 ? ASN B 373 . ? 1_555 ? 4 AC1 5 ILE B 7 ? ILE B 375 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH B 521 . ? 1_555 ? # _pdbx_entry_details.entry_id 3U21 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THIS CONSTRUCT (RESIDUES 370-495) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. RESIDUE NUMBERING IS BASED ON ISOFORM 1 OF UNIPROTKB ID Q6P4R8. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 390 ? ? 75.84 -47.01 2 1 SER A 391 ? ? 70.91 -47.25 3 1 SER A 444 ? ? -98.95 45.58 4 1 SER B 391 ? ? 74.11 -58.79 5 1 ASP B 466 ? ? 64.73 -1.97 # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for Stem Cell Biology' 2 STEMCELL # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 29 A MSE 397 ? MET SELENOMETHIONINE 2 A MLY 84 A MLY 452 ? LYS N-DIMETHYL-LYSINE 3 A MLY 86 A MLY 454 ? LYS N-DIMETHYL-LYSINE 4 A MLY 91 A MLY 459 ? LYS N-DIMETHYL-LYSINE 5 A MLY 101 A MLY 469 ? LYS N-DIMETHYL-LYSINE 6 A MLY 114 A MLY 482 ? LYS N-DIMETHYL-LYSINE 7 B MSE 29 B MSE 397 ? MET SELENOMETHIONINE 8 B MLY 84 B MLY 452 ? LYS N-DIMETHYL-LYSINE 9 B MLY 86 B MLY 454 ? LYS N-DIMETHYL-LYSINE 10 B MLY 91 B MLY 459 ? LYS N-DIMETHYL-LYSINE 11 B MLY 101 B MLY 469 ? LYS N-DIMETHYL-LYSINE 12 B MLY 114 B MLY 482 ? LYS N-DIMETHYL-LYSINE # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 61.0380 45.3410 53.3450 0.1040 0.0908 0.0800 -0.0072 -0.0181 -0.0191 1.0635 5.4284 4.0382 0.6754 -0.2069 0.1736 -0.0925 0.1532 -0.0607 0.0321 0.1089 -0.2375 -0.0577 -0.3529 0.0032 'X-RAY DIFFRACTION' 2 ? refined 48.6910 30.9920 75.4320 0.0991 0.1636 0.0509 0.0091 -0.0305 0.0487 3.0864 2.0962 4.4276 0.5889 -0.5343 -0.3884 0.0515 0.1051 -0.1566 -0.2075 -0.0591 0.1458 0.0171 0.0318 -0.5040 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 372 A 462 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 466 A 483 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 B 370 B 461 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B 464 B 483 ? . . . . ? # _phasing.method MAD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A LEU 370 ? A LEU 2 3 1 Y 1 A GLY 371 ? A GLY 3 4 1 Y 1 A GLN 463 ? A GLN 95 5 1 Y 1 A SER 464 ? A SER 96 6 1 Y 1 A GLN 465 ? A GLN 97 7 1 Y 1 A GLN 484 ? A GLN 116 8 1 Y 1 A ALA 485 ? A ALA 117 9 1 Y 1 A PHE 486 ? A PHE 118 10 1 Y 1 A CYS 487 ? A CYS 119 11 1 Y 1 A MLY 488 ? A MLY 120 12 1 Y 1 A GLN 489 ? A GLN 121 13 1 Y 1 A GLU 490 ? A GLU 122 14 1 Y 1 A ASN 491 ? A ASN 123 15 1 Y 1 A GLU 492 ? A GLU 124 16 1 Y 1 A ASP 493 ? A ASP 125 17 1 Y 1 A SER 494 ? A SER 126 18 1 Y 1 A SER 495 ? A SER 127 19 1 Y 1 B GLY 0 ? B GLY 1 20 1 Y 1 B ALA 440 ? B ALA 72 21 1 Y 1 B VAL 441 ? B VAL 73 22 1 Y 1 B PRO 442 ? B PRO 74 23 1 Y 1 B SER 443 ? B SER 75 24 1 Y 1 B GLY 462 ? B GLY 94 25 1 Y 1 B GLN 463 ? B GLN 95 26 1 Y 1 B GLN 484 ? B GLN 116 27 1 Y 1 B ALA 485 ? B ALA 117 28 1 Y 1 B PHE 486 ? B PHE 118 29 1 Y 1 B CYS 487 ? B CYS 119 30 1 Y 1 B MLY 488 ? B MLY 120 31 1 Y 1 B GLN 489 ? B GLN 121 32 1 Y 1 B GLU 490 ? B GLU 122 33 1 Y 1 B ASN 491 ? B ASN 123 34 1 Y 1 B GLU 492 ? B GLU 124 35 1 Y 1 B ASP 493 ? B ASP 125 36 1 Y 1 B SER 494 ? B SER 126 37 1 Y 1 B SER 495 ? B SER 127 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 LEU N N N N 162 LEU CA C N S 163 LEU C C N N 164 LEU O O N N 165 LEU CB C N N 166 LEU CG C N N 167 LEU CD1 C N N 168 LEU CD2 C N N 169 LEU OXT O N N 170 LEU H H N N 171 LEU H2 H N N 172 LEU HA H N N 173 LEU HB2 H N N 174 LEU HB3 H N N 175 LEU HG H N N 176 LEU HD11 H N N 177 LEU HD12 H N N 178 LEU HD13 H N N 179 LEU HD21 H N N 180 LEU HD22 H N N 181 LEU HD23 H N N 182 LEU HXT H N N 183 MLY N N N N 184 MLY CA C N S 185 MLY CB C N N 186 MLY CG C N N 187 MLY CD C N N 188 MLY CE C N N 189 MLY NZ N N N 190 MLY CH1 C N N 191 MLY CH2 C N N 192 MLY C C N N 193 MLY O O N N 194 MLY OXT O N N 195 MLY H H N N 196 MLY H2 H N N 197 MLY HA H N N 198 MLY HB2 H N N 199 MLY HB3 H N N 200 MLY HG2 H N N 201 MLY HG3 H N N 202 MLY HD2 H N N 203 MLY HD3 H N N 204 MLY HE2 H N N 205 MLY HE3 H N N 206 MLY HH11 H N N 207 MLY HH12 H N N 208 MLY HH13 H N N 209 MLY HH21 H N N 210 MLY HH22 H N N 211 MLY HH23 H N N 212 MLY HXT H N N 213 MSE N N N N 214 MSE CA C N S 215 MSE C C N N 216 MSE O O N N 217 MSE OXT O N N 218 MSE CB C N N 219 MSE CG C N N 220 MSE SE SE N N 221 MSE CE C N N 222 MSE H H N N 223 MSE H2 H N N 224 MSE HA H N N 225 MSE HXT H N N 226 MSE HB2 H N N 227 MSE HB3 H N N 228 MSE HG2 H N N 229 MSE HG3 H N N 230 MSE HE1 H N N 231 MSE HE2 H N N 232 MSE HE3 H N N 233 NA NA NA N N 234 PHE N N N N 235 PHE CA C N S 236 PHE C C N N 237 PHE O O N N 238 PHE CB C N N 239 PHE CG C Y N 240 PHE CD1 C Y N 241 PHE CD2 C Y N 242 PHE CE1 C Y N 243 PHE CE2 C Y N 244 PHE CZ C Y N 245 PHE OXT O N N 246 PHE H H N N 247 PHE H2 H N N 248 PHE HA H N N 249 PHE HB2 H N N 250 PHE HB3 H N N 251 PHE HD1 H N N 252 PHE HD2 H N N 253 PHE HE1 H N N 254 PHE HE2 H N N 255 PHE HZ H N N 256 PHE HXT H N N 257 PRO N N N N 258 PRO CA C N S 259 PRO C C N N 260 PRO O O N N 261 PRO CB C N N 262 PRO CG C N N 263 PRO CD C N N 264 PRO OXT O N N 265 PRO H H N N 266 PRO HA H N N 267 PRO HB2 H N N 268 PRO HB3 H N N 269 PRO HG2 H N N 270 PRO HG3 H N N 271 PRO HD2 H N N 272 PRO HD3 H N N 273 PRO HXT H N N 274 SER N N N N 275 SER CA C N S 276 SER C C N N 277 SER O O N N 278 SER CB C N N 279 SER OG O N N 280 SER OXT O N N 281 SER H H N N 282 SER H2 H N N 283 SER HA H N N 284 SER HB2 H N N 285 SER HB3 H N N 286 SER HG H N N 287 SER HXT H N N 288 THR N N N N 289 THR CA C N S 290 THR C C N N 291 THR O O N N 292 THR CB C N R 293 THR OG1 O N N 294 THR CG2 C N N 295 THR OXT O N N 296 THR H H N N 297 THR H2 H N N 298 THR HA H N N 299 THR HB H N N 300 THR HG1 H N N 301 THR HG21 H N N 302 THR HG22 H N N 303 THR HG23 H N N 304 THR HXT H N N 305 TRP N N N N 306 TRP CA C N S 307 TRP C C N N 308 TRP O O N N 309 TRP CB C N N 310 TRP CG C Y N 311 TRP CD1 C Y N 312 TRP CD2 C Y N 313 TRP NE1 N Y N 314 TRP CE2 C Y N 315 TRP CE3 C Y N 316 TRP CZ2 C Y N 317 TRP CZ3 C Y N 318 TRP CH2 C Y N 319 TRP OXT O N N 320 TRP H H N N 321 TRP H2 H N N 322 TRP HA H N N 323 TRP HB2 H N N 324 TRP HB3 H N N 325 TRP HD1 H N N 326 TRP HE1 H N N 327 TRP HE3 H N N 328 TRP HZ2 H N N 329 TRP HZ3 H N N 330 TRP HH2 H N N 331 TRP HXT H N N 332 TYR N N N N 333 TYR CA C N S 334 TYR C C N N 335 TYR O O N N 336 TYR CB C N N 337 TYR CG C Y N 338 TYR CD1 C Y N 339 TYR CD2 C Y N 340 TYR CE1 C Y N 341 TYR CE2 C Y N 342 TYR CZ C Y N 343 TYR OH O N N 344 TYR OXT O N N 345 TYR H H N N 346 TYR H2 H N N 347 TYR HA H N N 348 TYR HB2 H N N 349 TYR HB3 H N N 350 TYR HD1 H N N 351 TYR HD2 H N N 352 TYR HE1 H N N 353 TYR HE2 H N N 354 TYR HH H N N 355 TYR HXT H N N 356 VAL N N N N 357 VAL CA C N S 358 VAL C C N N 359 VAL O O N N 360 VAL CB C N N 361 VAL CG1 C N N 362 VAL CG2 C N N 363 VAL OXT O N N 364 VAL H H N N 365 VAL H2 H N N 366 VAL HA H N N 367 VAL HB H N N 368 VAL HG11 H N N 369 VAL HG12 H N N 370 VAL HG13 H N N 371 VAL HG21 H N N 372 VAL HG22 H N N 373 VAL HG23 H N N 374 VAL HXT H N N 375 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 MLY N CA sing N N 173 MLY N H sing N N 174 MLY N H2 sing N N 175 MLY CA CB sing N N 176 MLY CA C sing N N 177 MLY CA HA sing N N 178 MLY CB CG sing N N 179 MLY CB HB2 sing N N 180 MLY CB HB3 sing N N 181 MLY CG CD sing N N 182 MLY CG HG2 sing N N 183 MLY CG HG3 sing N N 184 MLY CD CE sing N N 185 MLY CD HD2 sing N N 186 MLY CD HD3 sing N N 187 MLY CE NZ sing N N 188 MLY CE HE2 sing N N 189 MLY CE HE3 sing N N 190 MLY NZ CH1 sing N N 191 MLY NZ CH2 sing N N 192 MLY CH1 HH11 sing N N 193 MLY CH1 HH12 sing N N 194 MLY CH1 HH13 sing N N 195 MLY CH2 HH21 sing N N 196 MLY CH2 HH22 sing N N 197 MLY CH2 HH23 sing N N 198 MLY C O doub N N 199 MLY C OXT sing N N 200 MLY OXT HXT sing N N 201 MSE N CA sing N N 202 MSE N H sing N N 203 MSE N H2 sing N N 204 MSE CA C sing N N 205 MSE CA CB sing N N 206 MSE CA HA sing N N 207 MSE C O doub N N 208 MSE C OXT sing N N 209 MSE OXT HXT sing N N 210 MSE CB CG sing N N 211 MSE CB HB2 sing N N 212 MSE CB HB3 sing N N 213 MSE CG SE sing N N 214 MSE CG HG2 sing N N 215 MSE CG HG3 sing N N 216 MSE SE CE sing N N 217 MSE CE HE1 sing N N 218 MSE CE HE2 sing N N 219 MSE CE HE3 sing N N 220 PHE N CA sing N N 221 PHE N H sing N N 222 PHE N H2 sing N N 223 PHE CA C sing N N 224 PHE CA CB sing N N 225 PHE CA HA sing N N 226 PHE C O doub N N 227 PHE C OXT sing N N 228 PHE CB CG sing N N 229 PHE CB HB2 sing N N 230 PHE CB HB3 sing N N 231 PHE CG CD1 doub Y N 232 PHE CG CD2 sing Y N 233 PHE CD1 CE1 sing Y N 234 PHE CD1 HD1 sing N N 235 PHE CD2 CE2 doub Y N 236 PHE CD2 HD2 sing N N 237 PHE CE1 CZ doub Y N 238 PHE CE1 HE1 sing N N 239 PHE CE2 CZ sing Y N 240 PHE CE2 HE2 sing N N 241 PHE CZ HZ sing N N 242 PHE OXT HXT sing N N 243 PRO N CA sing N N 244 PRO N CD sing N N 245 PRO N H sing N N 246 PRO CA C sing N N 247 PRO CA CB sing N N 248 PRO CA HA sing N N 249 PRO C O doub N N 250 PRO C OXT sing N N 251 PRO CB CG sing N N 252 PRO CB HB2 sing N N 253 PRO CB HB3 sing N N 254 PRO CG CD sing N N 255 PRO CG HG2 sing N N 256 PRO CG HG3 sing N N 257 PRO CD HD2 sing N N 258 PRO CD HD3 sing N N 259 PRO OXT HXT sing N N 260 SER N CA sing N N 261 SER N H sing N N 262 SER N H2 sing N N 263 SER CA C sing N N 264 SER CA CB sing N N 265 SER CA HA sing N N 266 SER C O doub N N 267 SER C OXT sing N N 268 SER CB OG sing N N 269 SER CB HB2 sing N N 270 SER CB HB3 sing N N 271 SER OG HG sing N N 272 SER OXT HXT sing N N 273 THR N CA sing N N 274 THR N H sing N N 275 THR N H2 sing N N 276 THR CA C sing N N 277 THR CA CB sing N N 278 THR CA HA sing N N 279 THR C O doub N N 280 THR C OXT sing N N 281 THR CB OG1 sing N N 282 THR CB CG2 sing N N 283 THR CB HB sing N N 284 THR OG1 HG1 sing N N 285 THR CG2 HG21 sing N N 286 THR CG2 HG22 sing N N 287 THR CG2 HG23 sing N N 288 THR OXT HXT sing N N 289 TRP N CA sing N N 290 TRP N H sing N N 291 TRP N H2 sing N N 292 TRP CA C sing N N 293 TRP CA CB sing N N 294 TRP CA HA sing N N 295 TRP C O doub N N 296 TRP C OXT sing N N 297 TRP CB CG sing N N 298 TRP CB HB2 sing N N 299 TRP CB HB3 sing N N 300 TRP CG CD1 doub Y N 301 TRP CG CD2 sing Y N 302 TRP CD1 NE1 sing Y N 303 TRP CD1 HD1 sing N N 304 TRP CD2 CE2 doub Y N 305 TRP CD2 CE3 sing Y N 306 TRP NE1 CE2 sing Y N 307 TRP NE1 HE1 sing N N 308 TRP CE2 CZ2 sing Y N 309 TRP CE3 CZ3 doub Y N 310 TRP CE3 HE3 sing N N 311 TRP CZ2 CH2 doub Y N 312 TRP CZ2 HZ2 sing N N 313 TRP CZ3 CH2 sing Y N 314 TRP CZ3 HZ3 sing N N 315 TRP CH2 HH2 sing N N 316 TRP OXT HXT sing N N 317 TYR N CA sing N N 318 TYR N H sing N N 319 TYR N H2 sing N N 320 TYR CA C sing N N 321 TYR CA CB sing N N 322 TYR CA HA sing N N 323 TYR C O doub N N 324 TYR C OXT sing N N 325 TYR CB CG sing N N 326 TYR CB HB2 sing N N 327 TYR CB HB3 sing N N 328 TYR CG CD1 doub Y N 329 TYR CG CD2 sing Y N 330 TYR CD1 CE1 sing Y N 331 TYR CD1 HD1 sing N N 332 TYR CD2 CE2 doub Y N 333 TYR CD2 HD2 sing N N 334 TYR CE1 CZ doub Y N 335 TYR CE1 HE1 sing N N 336 TYR CE2 CZ sing Y N 337 TYR CE2 HE2 sing N N 338 TYR CZ OH sing N N 339 TYR OH HH sing N N 340 TYR OXT HXT sing N N 341 VAL N CA sing N N 342 VAL N H sing N N 343 VAL N H2 sing N N 344 VAL CA C sing N N 345 VAL CA CB sing N N 346 VAL CA HA sing N N 347 VAL C O doub N N 348 VAL C OXT sing N N 349 VAL CB CG1 sing N N 350 VAL CB CG2 sing N N 351 VAL CB HB sing N N 352 VAL CG1 HG11 sing N N 353 VAL CG1 HG12 sing N N 354 VAL CG1 HG13 sing N N 355 VAL CG2 HG21 sing N N 356 VAL CG2 HG22 sing N N 357 VAL CG2 HG23 sing N N 358 VAL OXT HXT sing N N 359 # _atom_sites.entry_id 3U21 _atom_sites.fract_transf_matrix[1][1] 0.016409 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016409 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007643 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O SE # loop_ # loop_ #