data_3U2B # _entry.id 3U2B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3U2B pdb_00003u2b 10.2210/pdb3u2b/pdb NDB NA1330 ? ? RCSB RCSB068216 ? ? WWPDB D_1000068216 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-28 2 'Structure model' 1 1 2014-03-12 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3U2B _pdbx_database_status.recvd_initial_deposition_date 2011-10-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3f27 . unspecified PDB 1gt0 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jauch, R.' 1 'Ng, C.K.L.' 2 'Kolatkar, P.R.' 3 # _citation.id primary _citation.title 'The crystal structure of the Sox4 HMG domain-DNA complex suggests a mechanism for positional interdependence in DNA recognition' _citation.journal_abbrev Biochem.J. _citation.journal_volume 443 _citation.page_first 39 _citation.page_last 47 _citation.year 2012 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22181698 _citation.pdbx_database_id_DOI 10.1042/BJ20111768 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jauch, R.' 1 ? primary 'Ng, C.K.L.' 2 ? primary 'Narasimhan, K.' 3 ? primary 'Kolatkar, P.R.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*GP*G)-3') ; 4871.149 1 ? ? ? 'sequence derived from the Lama1 gene' 2 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3') ; 4925.233 1 ? ? ? 'sequence derived from the Lama1 gene' 3 polymer man 'Transcription factor SOX-4' 9718.521 1 ? ? 'UNP residues 57-135' ? 4 water nat water 18.015 8 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DT)(DC)(DT)(DA)(DT)(DT)(DG)(DT)(DC)(DC)(DT)(DG)(DG)' GTCTCTATTGTCCTGG A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DG)(DG)(DA)(DC)(DA)(DA)(DT)(DA)(DG)(DA)(DG)(DA)(DC)' CCAGGACAATAGAGAC B ? 3 'polypeptide(L)' no no GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKVK GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKVK C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DC n 1 6 DT n 1 7 DA n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DC n 1 13 DC n 1 14 DT n 1 15 DG n 1 16 DG n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DC n 2 8 DA n 2 9 DA n 2 10 DT n 2 11 DA n 2 12 DG n 2 13 DA n 2 14 DG n 2 15 DA n 2 16 DC n 3 1 GLY n 3 2 HIS n 3 3 ILE n 3 4 LYS n 3 5 ARG n 3 6 PRO n 3 7 MET n 3 8 ASN n 3 9 ALA n 3 10 PHE n 3 11 MET n 3 12 VAL n 3 13 TRP n 3 14 SER n 3 15 GLN n 3 16 ILE n 3 17 GLU n 3 18 ARG n 3 19 ARG n 3 20 LYS n 3 21 ILE n 3 22 MET n 3 23 GLU n 3 24 GLN n 3 25 SER n 3 26 PRO n 3 27 ASP n 3 28 MET n 3 29 HIS n 3 30 ASN n 3 31 ALA n 3 32 GLU n 3 33 ILE n 3 34 SER n 3 35 LYS n 3 36 ARG n 3 37 LEU n 3 38 GLY n 3 39 LYS n 3 40 ARG n 3 41 TRP n 3 42 LYS n 3 43 LEU n 3 44 LEU n 3 45 LYS n 3 46 ASP n 3 47 SER n 3 48 ASP n 3 49 LYS n 3 50 ILE n 3 51 PRO n 3 52 PHE n 3 53 ILE n 3 54 GLN n 3 55 GLU n 3 56 ALA n 3 57 GLU n 3 58 ARG n 3 59 LEU n 3 60 ARG n 3 61 LEU n 3 62 LYS n 3 63 HIS n 3 64 MET n 3 65 ALA n 3 66 ASP n 3 67 TYR n 3 68 PRO n 3 69 ASP n 3 70 TYR n 3 71 LYS n 3 72 TYR n 3 73 ARG n 3 74 PRO n 3 75 ARG n 3 76 LYS n 3 77 LYS n 3 78 VAL n 3 79 LYS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Sox4, Sox-4' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Synthetic DNA' 2 1 sample ? ? ? ? ? 'Synthetic DNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DA 11 11 11 DA DA B . n B 2 12 DG 12 12 12 DG DG B . n B 2 13 DA 13 13 13 DA DA B . n B 2 14 DG 14 14 14 DG DG B . n B 2 15 DA 15 15 15 DA DA B . n B 2 16 DC 16 16 16 DC DC B . n C 3 1 GLY 1 1 1 GLY GLY C . n C 3 2 HIS 2 2 2 HIS HIS C . n C 3 3 ILE 3 3 3 ILE ILE C . n C 3 4 LYS 4 4 4 LYS LYS C . n C 3 5 ARG 5 5 5 ARG ARG C . n C 3 6 PRO 6 6 6 PRO PRO C . n C 3 7 MET 7 7 7 MET MET C . n C 3 8 ASN 8 8 8 ASN ASN C . n C 3 9 ALA 9 9 9 ALA ALA C . n C 3 10 PHE 10 10 10 PHE PHE C . n C 3 11 MET 11 11 11 MET MET C . n C 3 12 VAL 12 12 12 VAL VAL C . n C 3 13 TRP 13 13 13 TRP TRP C . n C 3 14 SER 14 14 14 SER SER C . n C 3 15 GLN 15 15 15 GLN GLN C . n C 3 16 ILE 16 16 16 ILE ILE C . n C 3 17 GLU 17 17 17 GLU GLU C . n C 3 18 ARG 18 18 18 ARG ARG C . n C 3 19 ARG 19 19 19 ARG ARG C . n C 3 20 LYS 20 20 20 LYS LYS C . n C 3 21 ILE 21 21 21 ILE ILE C . n C 3 22 MET 22 22 22 MET MET C . n C 3 23 GLU 23 23 23 GLU GLU C . n C 3 24 GLN 24 24 24 GLN GLN C . n C 3 25 SER 25 25 25 SER SER C . n C 3 26 PRO 26 26 26 PRO PRO C . n C 3 27 ASP 27 27 27 ASP ASP C . n C 3 28 MET 28 28 28 MET MET C . n C 3 29 HIS 29 29 29 HIS HIS C . n C 3 30 ASN 30 30 30 ASN ASN C . n C 3 31 ALA 31 31 31 ALA ALA C . n C 3 32 GLU 32 32 32 GLU GLU C . n C 3 33 ILE 33 33 33 ILE ILE C . n C 3 34 SER 34 34 34 SER SER C . n C 3 35 LYS 35 35 35 LYS LYS C . n C 3 36 ARG 36 36 36 ARG ARG C . n C 3 37 LEU 37 37 37 LEU LEU C . n C 3 38 GLY 38 38 38 GLY GLY C . n C 3 39 LYS 39 39 39 LYS LYS C . n C 3 40 ARG 40 40 40 ARG ARG C . n C 3 41 TRP 41 41 41 TRP TRP C . n C 3 42 LYS 42 42 42 LYS LYS C . n C 3 43 LEU 43 43 43 LEU LEU C . n C 3 44 LEU 44 44 44 LEU LEU C . n C 3 45 LYS 45 45 45 LYS LYS C . n C 3 46 ASP 46 46 46 ASP ASP C . n C 3 47 SER 47 47 47 SER SER C . n C 3 48 ASP 48 48 48 ASP ASP C . n C 3 49 LYS 49 49 49 LYS LYS C . n C 3 50 ILE 50 50 50 ILE ILE C . n C 3 51 PRO 51 51 51 PRO PRO C . n C 3 52 PHE 52 52 52 PHE PHE C . n C 3 53 ILE 53 53 53 ILE ILE C . n C 3 54 GLN 54 54 54 GLN GLN C . n C 3 55 GLU 55 55 55 GLU GLU C . n C 3 56 ALA 56 56 56 ALA ALA C . n C 3 57 GLU 57 57 57 GLU GLU C . n C 3 58 ARG 58 58 58 ARG ARG C . n C 3 59 LEU 59 59 59 LEU LEU C . n C 3 60 ARG 60 60 60 ARG ARG C . n C 3 61 LEU 61 61 61 LEU LEU C . n C 3 62 LYS 62 62 62 LYS LYS C . n C 3 63 HIS 63 63 63 HIS HIS C . n C 3 64 MET 64 64 64 MET MET C . n C 3 65 ALA 65 65 65 ALA ALA C . n C 3 66 ASP 66 66 66 ASP ASP C . n C 3 67 TYR 67 67 67 TYR TYR C . n C 3 68 PRO 68 68 68 PRO PRO C . n C 3 69 ASP 69 69 69 ASP ASP C . n C 3 70 TYR 70 70 70 TYR TYR C . n C 3 71 LYS 71 71 71 LYS LYS C . n C 3 72 TYR 72 72 72 TYR TYR C . n C 3 73 ARG 73 73 73 ARG ARG C . n C 3 74 PRO 74 74 74 PRO PRO C . n C 3 75 ARG 75 75 75 ARG ARG C . n C 3 76 LYS 76 76 76 LYS LYS C . n C 3 77 LYS 77 77 ? ? ? C . n C 3 78 VAL 78 78 ? ? ? C . n C 3 79 LYS 79 79 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 17 4 HOH HOH A . D 4 HOH 2 18 5 HOH HOH A . D 4 HOH 3 19 6 HOH HOH A . E 4 HOH 1 17 2 HOH HOH B . E 4 HOH 2 18 3 HOH HOH B . F 4 HOH 1 80 1 HOH HOH C . F 4 HOH 2 81 7 HOH HOH C . F 4 HOH 3 82 8 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 PHENIX refinement '(phenix.refine: 1.5_2)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3U2B _cell.length_a 69.941 _cell.length_b 69.941 _cell.length_c 63.205 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U2B _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3U2B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_details '100mM Hepes pH 7.2, 20% PEG 3350 pH 7.2, 50mM MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-06-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock double crystal sagittal focusing monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.075 # _reflns.entry_id 3U2B _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.4 _reflns.number_obs 7040 _reflns.number_all 7155 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 50.570 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3U2B _refine.ls_number_reflns_obs 6855 _refine.ls_number_reflns_all 7129 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.22 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.732 _refine.ls_d_res_high 2.402 _refine.ls_percent_reflns_obs 94.46 _refine.ls_R_factor_obs 0.2377 _refine.ls_R_factor_all 0.27 _refine.ls_R_factor_R_work 0.2353 _refine.ls_R_factor_R_free 0.2795 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.49 _refine.ls_number_reflns_R_free 376 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 72.8900 _refine.aniso_B[1][1] 2.0061 _refine.aniso_B[2][2] 2.0061 _refine.aniso_B[3][3] -4.0122 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.259 _refine.solvent_model_param_bsol 29.210 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RAMDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.overall_FOM_work_R_set 0.6894 _refine.B_iso_max 179.840 _refine.B_iso_min 23.750 _refine.pdbx_overall_phase_error 35.3600 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 655 _refine_hist.pdbx_number_atoms_nucleic_acid 650 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 1313 _refine_hist.d_res_high 2.402 _refine_hist.d_res_low 43.732 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.003 ? ? 1399 ? 'X-RAY DIFFRACTION' f_angle_d 0.698 ? ? 2014 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 24.890 ? ? 587 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.037 ? ? 212 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 146 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 3 2.4022 2.7498 2060 0.3591 92.00 0.4502 . . 122 . . . . 'X-RAY DIFFRACTION' 3 2.7498 3.4642 2192 0.2791 97.00 0.2992 . . 127 . . . . 'X-RAY DIFFRACTION' 3 3.4642 43.7388 2227 0.1908 94.00 0.2385 . . 127 . . . . # _database_PDB_matrix.entry_id 3U2B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3U2B _struct.title 'Structure of the Sox4 HMG domain bound to DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U2B _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'HMG domain, transcriptional regulation, TRANSCRIPTION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3U2B 3U2B 1 ? ? ? 2 PDB 3U2B 3U2B 2 ? ? ? 3 UNP SOX4_MOUSE Q06831 3 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKVK 57 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U2B A 1 ? 16 ? 3U2B 1 ? 16 ? 1 16 2 2 3U2B B 1 ? 16 ? 3U2B 1 ? 16 ? 1 16 3 3 3U2B C 1 ? 79 ? Q06831 57 ? 135 ? 1 79 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4130 ? 1 MORE -18 ? 1 'SSA (A^2)' 10080 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 8 ? GLU C 23 ? ASN C 8 GLU C 23 1 ? 16 HELX_P HELX_P2 2 HIS C 29 ? LEU C 44 ? HIS C 29 LEU C 44 1 ? 16 HELX_P HELX_P3 3 LYS C 45 ? TYR C 67 ? LYS C 45 TYR C 67 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 16 N3 ? ? A DG 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 16 O2 ? ? A DG 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 16 N4 ? ? A DG 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 3 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 6 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 6 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 9 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 9 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 11 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 11 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 13 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 13 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 13 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 14 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 14 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 15 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 15 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 15 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.44 _pdbx_validate_rmsd_angle.angle_target_value 102.40 _pdbx_validate_rmsd_angle.angle_deviation -4.96 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.80 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 72 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -69.62 _pdbx_validate_torsion.psi 82.08 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 27.5302 -7.5161 -8.4456 0.6340 0.4538 0.2204 0.2218 0.1990 0.0432 7.6374 1.5972 7.4450 -1.2494 -5.6314 0.9629 -0.8943 -0.2544 -0.2371 0.1673 0.3079 -0.4225 2.8629 1.2355 0.5651 'X-RAY DIFFRACTION' 2 ? refined 21.8510 -19.5895 8.9273 0.9253 0.5692 0.3341 -0.2281 -0.2215 0.1895 2.8597 1.1632 6.6135 0.8426 -2.1481 1.5653 0.5902 -0.6225 -1.0452 0.2513 0.0523 0.7233 1.5990 0.3340 -0.2603 'X-RAY DIFFRACTION' 3 ? refined 23.0406 -11.4428 2.3563 0.5272 0.5327 0.2119 -0.2526 -0.0103 0.1182 2.6121 2.9649 1.2445 -0.9410 0.7600 1.4230 0.0847 0.7993 -0.2328 0.2106 -0.1775 0.0518 0.6691 0.4062 0.1627 'X-RAY DIFFRACTION' 4 ? refined 34.6440 -4.8566 -16.7356 0.6263 0.6622 0.5988 0.0048 0.4617 -0.1776 6.0928 3.7013 2.7565 -2.0125 -0.3851 1.2465 -1.2034 0.7565 0.0544 0.2181 0.5447 -0.2486 0.7093 -0.3444 0.2063 'X-RAY DIFFRACTION' 5 ? refined 14.1041 -14.6357 -5.6810 0.4437 0.9623 0.2836 -0.5075 -0.3428 0.2268 9.6933 3.8631 4.1938 -2.9901 5.0092 -2.5760 -0.0264 -0.1858 -0.4912 1.1903 -0.3155 -0.0117 -0.5069 -0.8782 0.6314 'X-RAY DIFFRACTION' 6 ? refined 13.6968 -1.2435 -0.1227 0.0463 0.8696 0.1220 -0.0530 -0.0449 0.0145 2.8325 3.7934 5.1385 2.7483 -1.8277 -0.4493 0.4217 0.4815 0.2950 0.4255 -0.6231 0.7407 0.2253 -1.5636 0.1027 'X-RAY DIFFRACTION' 7 ? refined 15.5422 6.2999 -9.3945 0.2092 0.8143 0.2387 0.0845 0.0578 0.1743 0.5174 2.1135 6.3302 0.6392 -1.4106 -2.4776 0.1308 1.0269 0.0636 0.1178 0.7733 0.3393 0.1043 -2.4853 -0.7255 'X-RAY DIFFRACTION' 8 ? refined 25.1498 5.5569 -12.6161 0.5927 0.7689 0.5795 -0.0314 0.1466 0.1935 7.8883 9.3547 1.1835 -5.8112 1.5636 -3.2327 1.1757 1.4909 0.7496 -0.8439 -0.9111 -0.3870 0.3114 -0.0050 0.1848 'X-RAY DIFFRACTION' 9 ? refined 15.4696 4.7899 3.1427 -0.0992 0.2222 -0.5290 0.1589 -0.2474 0.4858 0.3476 3.3255 2.1810 -0.7507 1.4596 -1.0877 0.1477 0.0320 0.7666 1.3762 -1.1691 2.1082 -1.3788 -4.3178 -0.8130 'X-RAY DIFFRACTION' 10 ? refined 4.2748 -11.3080 0.0428 0.4583 1.9028 0.1521 -0.7068 -0.0614 0.1109 0.9268 5.4698 3.8632 -1.5190 -1.0066 0.0452 -0.3030 -0.1664 0.0360 -1.5723 1.1893 -0.6565 0.7749 -2.7487 -0.9329 'X-RAY DIFFRACTION' 11 ? refined 15.2937 -21.4458 -2.2962 2.2215 0.5172 0.3913 -0.2727 -0.1977 -0.1352 8.4039 0.8012 5.7957 -0.9141 -6.9038 0.6608 -1.5004 0.8187 -0.7454 1.3108 0.7501 0.0039 2.2174 -1.1047 0.8168 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 10 '(chain A and resid 1:10)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 11 A 16 '(chain A and resid 11:16)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 1 B 11 '(chain B and resid 1:11)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 12 B 16 '(chain B and resid 12:16)' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 C 1 C 7 '(chain C and resid 1:7)' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 C 8 C 13 '(chain C and resid 8:13)' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 C 14 C 25 '(chain C and resid 14:25)' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 C 26 C 30 '(chain C and resid 26:30)' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 C 31 C 54 '(chain C and resid 31:54)' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 C 55 C 65 '(chain C and resid 55:65)' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 C 66 C 76 '(chain C and resid 66:76)' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C LYS 77 ? C LYS 77 2 1 Y 1 C VAL 78 ? C VAL 78 3 1 Y 1 C LYS 79 ? C LYS 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 TRP N N N N 433 TRP CA C N S 434 TRP C C N N 435 TRP O O N N 436 TRP CB C N N 437 TRP CG C Y N 438 TRP CD1 C Y N 439 TRP CD2 C Y N 440 TRP NE1 N Y N 441 TRP CE2 C Y N 442 TRP CE3 C Y N 443 TRP CZ2 C Y N 444 TRP CZ3 C Y N 445 TRP CH2 C Y N 446 TRP OXT O N N 447 TRP H H N N 448 TRP H2 H N N 449 TRP HA H N N 450 TRP HB2 H N N 451 TRP HB3 H N N 452 TRP HD1 H N N 453 TRP HE1 H N N 454 TRP HE3 H N N 455 TRP HZ2 H N N 456 TRP HZ3 H N N 457 TRP HH2 H N N 458 TRP HXT H N N 459 TYR N N N N 460 TYR CA C N S 461 TYR C C N N 462 TYR O O N N 463 TYR CB C N N 464 TYR CG C Y N 465 TYR CD1 C Y N 466 TYR CD2 C Y N 467 TYR CE1 C Y N 468 TYR CE2 C Y N 469 TYR CZ C Y N 470 TYR OH O N N 471 TYR OXT O N N 472 TYR H H N N 473 TYR H2 H N N 474 TYR HA H N N 475 TYR HB2 H N N 476 TYR HB3 H N N 477 TYR HD1 H N N 478 TYR HD2 H N N 479 TYR HE1 H N N 480 TYR HE2 H N N 481 TYR HH H N N 482 TYR HXT H N N 483 VAL N N N N 484 VAL CA C N S 485 VAL C C N N 486 VAL O O N N 487 VAL CB C N N 488 VAL CG1 C N N 489 VAL CG2 C N N 490 VAL OXT O N N 491 VAL H H N N 492 VAL H2 H N N 493 VAL HA H N N 494 VAL HB H N N 495 VAL HG11 H N N 496 VAL HG12 H N N 497 VAL HG13 H N N 498 VAL HG21 H N N 499 VAL HG22 H N N 500 VAL HG23 H N N 501 VAL HXT H N N 502 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 TRP N CA sing N N 426 TRP N H sing N N 427 TRP N H2 sing N N 428 TRP CA C sing N N 429 TRP CA CB sing N N 430 TRP CA HA sing N N 431 TRP C O doub N N 432 TRP C OXT sing N N 433 TRP CB CG sing N N 434 TRP CB HB2 sing N N 435 TRP CB HB3 sing N N 436 TRP CG CD1 doub Y N 437 TRP CG CD2 sing Y N 438 TRP CD1 NE1 sing Y N 439 TRP CD1 HD1 sing N N 440 TRP CD2 CE2 doub Y N 441 TRP CD2 CE3 sing Y N 442 TRP NE1 CE2 sing Y N 443 TRP NE1 HE1 sing N N 444 TRP CE2 CZ2 sing Y N 445 TRP CE3 CZ3 doub Y N 446 TRP CE3 HE3 sing N N 447 TRP CZ2 CH2 doub Y N 448 TRP CZ2 HZ2 sing N N 449 TRP CZ3 CH2 sing Y N 450 TRP CZ3 HZ3 sing N N 451 TRP CH2 HH2 sing N N 452 TRP OXT HXT sing N N 453 TYR N CA sing N N 454 TYR N H sing N N 455 TYR N H2 sing N N 456 TYR CA C sing N N 457 TYR CA CB sing N N 458 TYR CA HA sing N N 459 TYR C O doub N N 460 TYR C OXT sing N N 461 TYR CB CG sing N N 462 TYR CB HB2 sing N N 463 TYR CB HB3 sing N N 464 TYR CG CD1 doub Y N 465 TYR CG CD2 sing Y N 466 TYR CD1 CE1 sing Y N 467 TYR CD1 HD1 sing N N 468 TYR CD2 CE2 doub Y N 469 TYR CD2 HD2 sing N N 470 TYR CE1 CZ doub Y N 471 TYR CE1 HE1 sing N N 472 TYR CE2 CZ sing Y N 473 TYR CE2 HE2 sing N N 474 TYR CZ OH sing N N 475 TYR OH HH sing N N 476 TYR OXT HXT sing N N 477 VAL N CA sing N N 478 VAL N H sing N N 479 VAL N H2 sing N N 480 VAL CA C sing N N 481 VAL CA CB sing N N 482 VAL CA HA sing N N 483 VAL C O doub N N 484 VAL C OXT sing N N 485 VAL CB CG1 sing N N 486 VAL CB CG2 sing N N 487 VAL CB HB sing N N 488 VAL CG1 HG11 sing N N 489 VAL CG1 HG12 sing N N 490 VAL CG1 HG13 sing N N 491 VAL CG2 HG21 sing N N 492 VAL CG2 HG22 sing N N 493 VAL CG2 HG23 sing N N 494 VAL OXT HXT sing N N 495 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3U2B 'double helix' 3U2B 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 16 1_555 -0.386 -0.213 -0.278 -14.539 -2.263 0.423 1 A_DG1:DC16_B A 1 ? B 16 ? 19 1 1 A DT 2 1_555 B DA 15 1_555 -0.002 -0.274 0.012 -3.186 -9.640 2.164 2 A_DT2:DA15_B A 2 ? B 15 ? 20 1 1 A DC 3 1_555 B DG 14 1_555 -0.261 -0.142 -0.014 -3.980 -9.882 2.960 3 A_DC3:DG14_B A 3 ? B 14 ? 19 1 1 A DT 4 1_555 B DA 13 1_555 -0.663 -0.288 0.019 -3.486 -12.054 -1.975 4 A_DT4:DA13_B A 4 ? B 13 ? 20 1 1 A DC 5 1_555 B DG 12 1_555 -0.014 -0.256 0.374 -7.533 -7.072 -1.365 5 A_DC5:DG12_B A 5 ? B 12 ? 19 1 1 A DT 6 1_555 B DA 11 1_555 -0.810 -0.187 0.490 -10.278 3.700 1.788 6 A_DT6:DA11_B A 6 ? B 11 ? 20 1 1 A DA 7 1_555 B DT 10 1_555 0.365 -0.162 -0.278 1.471 8.952 7.633 7 A_DA7:DT10_B A 7 ? B 10 ? 20 1 1 A DT 8 1_555 B DA 9 1_555 0.114 -0.253 0.438 18.436 20.890 -2.585 8 A_DT8:DA9_B A 8 ? B 9 ? 20 1 1 A DT 9 1_555 B DA 8 1_555 -0.434 -0.145 0.530 -21.853 -14.577 0.544 9 A_DT9:DA8_B A 9 ? B 8 ? 20 1 1 A DG 10 1_555 B DC 7 1_555 -0.566 -0.243 0.112 -16.706 -3.813 2.881 10 A_DG10:DC7_B A 10 ? B 7 ? 19 1 1 A DT 11 1_555 B DA 6 1_555 -0.188 -0.105 -0.157 -4.288 -8.643 2.344 11 A_DT11:DA6_B A 11 ? B 6 ? 20 1 1 A DC 12 1_555 B DG 5 1_555 -0.412 -0.041 0.347 -0.893 -17.136 3.812 12 A_DC12:DG5_B A 12 ? B 5 ? 19 1 1 A DC 13 1_555 B DG 4 1_555 -0.573 -0.095 0.389 -14.587 -1.899 1.189 13 A_DC13:DG4_B A 13 ? B 4 ? 19 1 1 A DT 14 1_555 B DA 3 1_555 -0.250 -0.210 0.526 -4.040 -6.012 -0.252 14 A_DT14:DA3_B A 14 ? B 3 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 0.040 -0.074 -0.030 1.468 -8.947 2.393 15 A_DG15:DC2_B A 15 ? B 2 ? 19 1 1 A DG 16 1_555 B DC 1 1_555 -0.132 -0.183 0.089 7.059 9.760 0.400 16 A_DG16:DC1_B A 16 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 16 1_555 A DT 2 1_555 B DA 15 1_555 -0.516 -0.736 3.003 -1.307 3.375 33.498 -1.769 0.697 2.934 5.835 2.260 33.687 1 AA_DG1DT2:DA15DC16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A DT 2 1_555 B DA 15 1_555 A DC 3 1_555 B DG 14 1_555 0.640 -0.182 3.298 1.569 3.009 30.748 -0.930 -0.893 3.294 5.652 -2.948 30.931 2 AA_DT2DC3:DG14DA15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DC 3 1_555 B DG 14 1_555 A DT 4 1_555 B DA 13 1_555 -0.540 -0.233 3.344 0.278 3.743 33.195 -1.037 0.986 3.294 6.526 -0.484 33.400 3 AA_DC3DT4:DA13DG14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DT 4 1_555 B DA 13 1_555 A DC 5 1_555 B DG 12 1_555 0.405 -0.248 3.383 -0.338 0.201 41.311 -0.373 -0.612 3.379 0.285 0.479 41.312 4 AA_DT4DC5:DG12DA13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DC 5 1_555 B DG 12 1_555 A DT 6 1_555 B DA 11 1_555 0.533 -0.648 3.450 2.685 0.876 29.902 -1.442 -0.444 3.463 1.692 -5.189 30.032 5 AA_DC5DT6:DA11DG12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DT 6 1_555 B DA 11 1_555 A DA 7 1_555 B DT 10 1_555 0.774 1.229 3.679 4.209 21.333 23.098 -2.886 -0.407 3.623 42.982 -8.480 31.621 6 AA_DT6DA7:DT10DA11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DA 7 1_555 B DT 10 1_555 A DT 8 1_555 B DA 9 1_555 -0.624 0.226 3.384 -2.576 15.280 16.656 -5.382 0.580 2.710 42.607 7.183 22.712 7 AA_DA7DT8:DA9DT10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A DT 8 1_555 B DA 9 1_555 A DT 9 1_555 B DA 8 1_555 0.291 0.437 5.678 1.792 50.741 27.943 -4.879 -0.114 3.236 62.995 -2.224 57.503 8 AA_DT8DT9:DA8DA9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A DT 9 1_555 B DA 8 1_555 A DG 10 1_555 B DC 7 1_555 0.473 0.649 3.133 0.160 0.955 34.570 0.950 -0.771 3.151 1.607 -0.269 34.583 9 AA_DT9DG10:DC7DA8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A DG 10 1_555 B DC 7 1_555 A DT 11 1_555 B DA 6 1_555 -0.380 -0.279 3.070 1.433 9.405 30.879 -2.047 0.920 2.845 17.160 -2.614 32.277 10 AA_DG10DT11:DA6DC7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A DT 11 1_555 B DA 6 1_555 A DC 12 1_555 B DG 5 1_555 0.230 0.352 3.151 -6.464 4.289 38.152 0.026 -1.102 3.093 6.480 9.765 38.904 11 AA_DT11DC12:DG5DA6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A DC 12 1_555 B DG 5 1_555 A DC 13 1_555 B DG 4 1_555 -0.665 -0.530 3.673 -1.478 1.413 32.239 -1.235 0.902 3.673 2.541 2.658 32.302 12 AA_DC12DC13:DG4DG5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 A DC 13 1_555 B DG 4 1_555 A DT 14 1_555 B DA 3 1_555 -0.395 -0.412 3.117 -0.991 0.067 35.066 -0.694 0.513 3.126 0.111 1.644 35.080 13 AA_DC13DT14:DA3DG4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 A DT 14 1_555 B DA 3 1_555 A DG 15 1_555 B DC 2 1_555 -0.034 0.750 3.231 4.410 3.241 41.176 0.715 0.515 3.257 4.584 -6.237 41.522 14 AA_DT14DG15:DC2DA3_BB A 14 ? B 3 ? A 15 ? B 2 ? 1 A DG 15 1_555 B DC 2 1_555 A DG 16 1_555 B DC 1 1_555 0.507 0.098 3.158 -3.090 -1.668 30.374 0.502 -1.547 3.083 -3.171 5.872 30.571 15 AA_DG15DG16:DC1DC2_BB A 15 ? B 2 ? A 16 ? B 1 ? # _atom_sites.entry_id 3U2B _atom_sites.fract_transf_matrix[1][1] 0.014298 _atom_sites.fract_transf_matrix[1][2] 0.008255 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016510 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015822 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_