HEADER TRANSCRIPTION/DNA 03-OCT-11 3U2B TITLE STRUCTURE OF THE SOX4 HMG DOMAIN BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*GP*G)- COMPND 3 3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SEQUENCE DERIVED FROM THE LAMA1 GENE; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)- COMPND 9 3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: SEQUENCE DERIVED FROM THE LAMA1 GENE; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: TRANSCRIPTION FACTOR SOX-4; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: UNP RESIDUES 57-135; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC DNA; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SYNTHETIC DNA; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 GENE: SOX4, SOX-4; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HMG DOMAIN, TRANSCRIPTIONAL REGULATION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.JAUCH,C.K.L.NG,P.R.KOLATKAR REVDAT 3 20-MAR-24 3U2B 1 REMARK REVDAT 2 12-MAR-14 3U2B 1 JRNL REVDAT 1 28-DEC-11 3U2B 0 JRNL AUTH R.JAUCH,C.K.L.NG,K.NARASIMHAN,P.R.KOLATKAR JRNL TITL THE CRYSTAL STRUCTURE OF THE SOX4 HMG DOMAIN-DNA COMPLEX JRNL TITL 2 SUGGESTS A MECHANISM FOR POSITIONAL INTERDEPENDENCE IN DNA JRNL TITL 3 RECOGNITION JRNL REF BIOCHEM.J. V. 443 39 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 22181698 JRNL DOI 10.1042/BJ20111768 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 6855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.490 REMARK 3 FREE R VALUE TEST SET COUNT : 376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7388 - 3.4642 0.94 2227 127 0.1908 0.2385 REMARK 3 2 3.4642 - 2.7498 0.97 2192 127 0.2791 0.2992 REMARK 3 3 2.7498 - 2.4022 0.92 2060 122 0.3591 0.4502 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.26 REMARK 3 B_SOL : 29.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.00610 REMARK 3 B22 (A**2) : 2.00610 REMARK 3 B33 (A**2) : -4.01220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1399 REMARK 3 ANGLE : 0.698 2014 REMARK 3 CHIRALITY : 0.037 212 REMARK 3 PLANARITY : 0.003 146 REMARK 3 DIHEDRAL : 24.890 587 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5302 -7.5161 -8.4456 REMARK 3 T TENSOR REMARK 3 T11: 0.6340 T22: 0.4538 REMARK 3 T33: 0.2204 T12: 0.2218 REMARK 3 T13: 0.1990 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 7.6374 L22: 1.5972 REMARK 3 L33: 7.4450 L12: -1.2494 REMARK 3 L13: -5.6314 L23: 0.9629 REMARK 3 S TENSOR REMARK 3 S11: -0.8943 S12: -0.2544 S13: -0.2371 REMARK 3 S21: 0.1673 S22: 0.3079 S23: -0.4225 REMARK 3 S31: 2.8629 S32: 1.2355 S33: 0.5651 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 11:16) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8510 -19.5895 8.9273 REMARK 3 T TENSOR REMARK 3 T11: 0.9253 T22: 0.5692 REMARK 3 T33: 0.3341 T12: -0.2281 REMARK 3 T13: -0.2215 T23: 0.1895 REMARK 3 L TENSOR REMARK 3 L11: 2.8597 L22: 1.1632 REMARK 3 L33: 6.6135 L12: 0.8426 REMARK 3 L13: -2.1481 L23: 1.5653 REMARK 3 S TENSOR REMARK 3 S11: 0.5902 S12: -0.6225 S13: -1.0452 REMARK 3 S21: 0.2513 S22: 0.0523 S23: 0.7233 REMARK 3 S31: 1.5990 S32: 0.3340 S33: -0.2603 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 1:11) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0406 -11.4428 2.3563 REMARK 3 T TENSOR REMARK 3 T11: 0.5272 T22: 0.5327 REMARK 3 T33: 0.2119 T12: -0.2526 REMARK 3 T13: -0.0103 T23: 0.1182 REMARK 3 L TENSOR REMARK 3 L11: 2.6121 L22: 2.9649 REMARK 3 L33: 1.2445 L12: -0.9410 REMARK 3 L13: 0.7600 L23: 1.4230 REMARK 3 S TENSOR REMARK 3 S11: 0.0847 S12: 0.7993 S13: -0.2328 REMARK 3 S21: 0.2106 S22: -0.1775 S23: 0.0518 REMARK 3 S31: 0.6691 S32: 0.4062 S33: 0.1627 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 12:16) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6440 -4.8566 -16.7356 REMARK 3 T TENSOR REMARK 3 T11: 0.6263 T22: 0.6622 REMARK 3 T33: 0.5988 T12: 0.0048 REMARK 3 T13: 0.4617 T23: -0.1776 REMARK 3 L TENSOR REMARK 3 L11: 6.0928 L22: 3.7013 REMARK 3 L33: 2.7565 L12: -2.0125 REMARK 3 L13: -0.3851 L23: 1.2465 REMARK 3 S TENSOR REMARK 3 S11: -1.2034 S12: 0.7565 S13: 0.0544 REMARK 3 S21: 0.2181 S22: 0.5447 S23: -0.2486 REMARK 3 S31: 0.7093 S32: -0.3444 S33: 0.2063 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1041 -14.6357 -5.6810 REMARK 3 T TENSOR REMARK 3 T11: 0.4437 T22: 0.9623 REMARK 3 T33: 0.2836 T12: -0.5075 REMARK 3 T13: -0.3428 T23: 0.2268 REMARK 3 L TENSOR REMARK 3 L11: 9.6933 L22: 3.8631 REMARK 3 L33: 4.1938 L12: -2.9901 REMARK 3 L13: 5.0092 L23: -2.5760 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.1858 S13: -0.4912 REMARK 3 S21: 1.1903 S22: -0.3155 S23: -0.0117 REMARK 3 S31: -0.5069 S32: -0.8782 S33: 0.6314 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 8:13) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6968 -1.2435 -0.1227 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.8696 REMARK 3 T33: 0.1220 T12: -0.0530 REMARK 3 T13: -0.0449 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.8325 L22: 3.7934 REMARK 3 L33: 5.1385 L12: 2.7483 REMARK 3 L13: -1.8277 L23: -0.4493 REMARK 3 S TENSOR REMARK 3 S11: 0.4217 S12: 0.4815 S13: 0.2950 REMARK 3 S21: 0.4255 S22: -0.6231 S23: 0.7407 REMARK 3 S31: 0.2253 S32: -1.5636 S33: 0.1027 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN C AND RESID 14:25) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5422 6.2999 -9.3945 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.8143 REMARK 3 T33: 0.2387 T12: 0.0845 REMARK 3 T13: 0.0578 T23: 0.1743 REMARK 3 L TENSOR REMARK 3 L11: 0.5174 L22: 2.1135 REMARK 3 L33: 6.3302 L12: 0.6392 REMARK 3 L13: -1.4106 L23: -2.4776 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: 1.0269 S13: 0.0636 REMARK 3 S21: 0.1178 S22: 0.7733 S23: 0.3393 REMARK 3 S31: 0.1043 S32: -2.4853 S33: -0.7255 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN C AND RESID 26:30) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1498 5.5569 -12.6161 REMARK 3 T TENSOR REMARK 3 T11: 0.5927 T22: 0.7689 REMARK 3 T33: 0.5795 T12: -0.0314 REMARK 3 T13: 0.1466 T23: 0.1935 REMARK 3 L TENSOR REMARK 3 L11: 7.8883 L22: 9.3547 REMARK 3 L33: 1.1835 L12: -5.8112 REMARK 3 L13: 1.5636 L23: -3.2327 REMARK 3 S TENSOR REMARK 3 S11: 1.1757 S12: 1.4909 S13: 0.7496 REMARK 3 S21: -0.8439 S22: -0.9111 S23: -0.3870 REMARK 3 S31: 0.3114 S32: -0.0050 S33: 0.1848 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 31:54) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4696 4.7899 3.1427 REMARK 3 T TENSOR REMARK 3 T11: -0.0992 T22: 0.2222 REMARK 3 T33: -0.5290 T12: 0.1589 REMARK 3 T13: -0.2474 T23: 0.4858 REMARK 3 L TENSOR REMARK 3 L11: 0.3476 L22: 3.3255 REMARK 3 L33: 2.1810 L12: -0.7507 REMARK 3 L13: 1.4596 L23: -1.0877 REMARK 3 S TENSOR REMARK 3 S11: 0.1477 S12: 0.0320 S13: 0.7666 REMARK 3 S21: 1.3762 S22: -1.1691 S23: 2.1082 REMARK 3 S31: -1.3788 S32: -4.3178 S33: -0.8130 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 55:65) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2748 -11.3080 0.0428 REMARK 3 T TENSOR REMARK 3 T11: 0.4583 T22: 1.9028 REMARK 3 T33: 0.1521 T12: -0.7068 REMARK 3 T13: -0.0614 T23: 0.1109 REMARK 3 L TENSOR REMARK 3 L11: 0.9268 L22: 5.4698 REMARK 3 L33: 3.8632 L12: -1.5190 REMARK 3 L13: -1.0066 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.3030 S12: -0.1664 S13: 0.0360 REMARK 3 S21: -1.5723 S22: 1.1893 S23: -0.6565 REMARK 3 S31: 0.7749 S32: -2.7487 S33: -0.9329 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 66:76) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2937 -21.4458 -2.2962 REMARK 3 T TENSOR REMARK 3 T11: 2.2215 T22: 0.5172 REMARK 3 T33: 0.3913 T12: -0.2727 REMARK 3 T13: -0.1977 T23: -0.1352 REMARK 3 L TENSOR REMARK 3 L11: 8.4039 L22: 0.8012 REMARK 3 L33: 5.7957 L12: -0.9141 REMARK 3 L13: -6.9038 L23: 0.6608 REMARK 3 S TENSOR REMARK 3 S11: -1.5004 S12: 0.8187 S13: -0.7454 REMARK 3 S21: 1.3108 S22: 0.7501 S23: 0.0039 REMARK 3 S31: 2.2174 S32: -1.1047 S33: 0.8168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.2, 20% PEG 3350 PH REMARK 280 7.2, 50MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.13667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.06833 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.06833 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.13667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 77 REMARK 465 VAL C 78 REMARK 465 LYS C 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 1 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 72 82.08 -69.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F27 RELATED DB: PDB REMARK 900 RELATED ID: 1GT0 RELATED DB: PDB DBREF 3U2B A 1 16 PDB 3U2B 3U2B 1 16 DBREF 3U2B B 1 16 PDB 3U2B 3U2B 1 16 DBREF 3U2B C 1 79 UNP Q06831 SOX4_MOUSE 57 135 SEQRES 1 A 16 DG DT DC DT DC DT DA DT DT DG DT DC DC SEQRES 2 A 16 DT DG DG SEQRES 1 B 16 DC DC DA DG DG DA DC DA DA DT DA DG DA SEQRES 2 B 16 DG DA DC SEQRES 1 C 79 GLY HIS ILE LYS ARG PRO MET ASN ALA PHE MET VAL TRP SEQRES 2 C 79 SER GLN ILE GLU ARG ARG LYS ILE MET GLU GLN SER PRO SEQRES 3 C 79 ASP MET HIS ASN ALA GLU ILE SER LYS ARG LEU GLY LYS SEQRES 4 C 79 ARG TRP LYS LEU LEU LYS ASP SER ASP LYS ILE PRO PHE SEQRES 5 C 79 ILE GLN GLU ALA GLU ARG LEU ARG LEU LYS HIS MET ALA SEQRES 6 C 79 ASP TYR PRO ASP TYR LYS TYR ARG PRO ARG LYS LYS VAL SEQRES 7 C 79 LYS FORMUL 4 HOH *8(H2 O) HELIX 1 1 ASN C 8 GLU C 23 1 16 HELIX 2 2 HIS C 29 LEU C 44 1 16 HELIX 3 3 LYS C 45 TYR C 67 1 23 CRYST1 69.941 69.941 63.205 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014298 0.008255 0.000000 0.00000 SCALE2 0.000000 0.016510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015822 0.00000