HEADER HYDROLASE 05-OCT-11 3U3D TITLE PLASMODIUM FALCIPARUM SIR2A PREFERENTIALLY HYDROLYZES MEDIUM AND LONG TITLE 2 CHAIN FATTY ACYL LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN SIR2 HOMOLOGUE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIR2A; COMPND 5 EC: 3.5.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE 3 MYRISTOYL LYSINE 9 PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF13_0152, SIR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 R2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS ZN-BINDING DOMAIN, ROSSMANN FOLD DOMAIN, NAD-DEPENDENT DEACYLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHOU,Q.HAO REVDAT 3 01-NOV-23 3U3D 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3U3D 1 REMARK REVDAT 1 09-NOV-11 3U3D 0 JRNL AUTH A.Y.ZHU,Y.ZHOU,S.KHAN,K.W.DEITSCH,Q.HAO,H.LIN JRNL TITL PLASMODIUM FALCIPARUM SIR2A PREFERENTIALLY HYDROLYZES MEDIUM JRNL TITL 2 AND LONG CHAIN FATTY ACYL LYSINE JRNL REF ACS CHEM.BIOL. 2011 JRNL REFN ESSN 1554-8937 JRNL PMID 21992006 JRNL DOI 10.1021/CB200230X REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 14289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2163 ; 0.047 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2911 ; 2.100 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 7.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;41.389 ;25.256 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;20.564 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;13.804 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1518 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1342 ;20.254 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2183 ;23.346 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 821 ;52.148 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 727 ;29.791 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3880 -25.2990 -31.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.4696 REMARK 3 T33: 0.1882 T12: -0.0382 REMARK 3 T13: 0.0035 T23: -0.1244 REMARK 3 L TENSOR REMARK 3 L11: -0.0192 L22: 1.3595 REMARK 3 L33: 4.9316 L12: -1.1180 REMARK 3 L13: 0.1315 L23: 1.8369 REMARK 3 S TENSOR REMARK 3 S11: -0.1442 S12: 0.5977 S13: 0.0309 REMARK 3 S21: 0.0388 S22: 0.1611 S23: -0.3658 REMARK 3 S31: -0.1775 S32: 0.4968 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0090 -16.5320 -13.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.1225 REMARK 3 T33: 0.3525 T12: 0.0082 REMARK 3 T13: -0.0056 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.5892 L22: 0.5759 REMARK 3 L33: 1.1570 L12: -0.2925 REMARK 3 L13: -0.1155 L23: 0.5124 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: 0.0822 S13: 0.0101 REMARK 3 S21: -0.0354 S22: -0.0790 S23: -0.0759 REMARK 3 S31: -0.1435 S32: -0.0818 S33: 0.0355 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2990 -32.4170 -20.3390 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: 0.1693 REMARK 3 T33: 0.6341 T12: -0.0681 REMARK 3 T13: 0.0455 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 8.9715 L22: 3.2331 REMARK 3 L33: 24.6814 L12: 6.7548 REMARK 3 L13: 3.0731 L23: 5.4370 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.0166 S13: -0.2346 REMARK 3 S21: 0.3112 S22: -0.2052 S23: 0.1153 REMARK 3 S31: 1.0299 S32: -1.5871 S33: 0.2564 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9080 -31.1680 -29.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.3060 REMARK 3 T33: 0.3722 T12: 0.0550 REMARK 3 T13: 0.0199 T23: -0.2156 REMARK 3 L TENSOR REMARK 3 L11: -0.1287 L22: -2.5049 REMARK 3 L33: 10.8479 L12: 0.6144 REMARK 3 L13: -1.9035 L23: -0.3440 REMARK 3 S TENSOR REMARK 3 S11: -0.2605 S12: 0.2519 S13: -0.3169 REMARK 3 S21: -0.2622 S22: 0.0753 S23: -0.1877 REMARK 3 S31: 0.4536 S32: 0.0435 S33: 0.1852 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7490 -28.9040 -35.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.3140 REMARK 3 T33: 0.2363 T12: -0.0049 REMARK 3 T13: 0.0680 T23: -0.2108 REMARK 3 L TENSOR REMARK 3 L11: 3.1045 L22: 1.1955 REMARK 3 L33: 4.5458 L12: -0.7417 REMARK 3 L13: 1.9034 L23: 0.0141 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: 0.6699 S13: -0.5043 REMARK 3 S21: -0.0960 S22: -0.1547 S23: -0.2285 REMARK 3 S31: -0.0382 S32: 0.3528 S33: 0.2100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3JWP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.1M NAF, 7% FORMAMIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 16.25550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.66400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.25550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.66400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 MET A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 PHE A 8 REMARK 465 LEU A 9 REMARK 465 MET A 273 REMARK 465 LYS B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 13 REMARK 465 TRP B 14 REMARK 465 TRP B 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 141 CB CYS A 141 SG -0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 CYS A 168 CA - CB - SG ANGL. DEV. = 13.7 DEGREES REMARK 500 CYS A 170 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 30 81.43 -151.76 REMARK 500 ASN A 44 43.33 90.24 REMARK 500 ARG A 49 -24.48 86.00 REMARK 500 ARG A 49 -22.67 84.05 REMARK 500 ASN A 53 31.40 -74.80 REMARK 500 ILE A 92 128.01 -39.21 REMARK 500 THR A 142 -60.14 -108.35 REMARK 500 THR A 211 -155.65 -112.41 REMARK 500 SER A 235 158.36 178.56 REMARK 500 ASN A 241 -0.93 72.27 REMARK 500 PHE A 252 -38.30 -39.54 REMARK 500 LYS A 268 73.84 -58.92 REMARK 500 ASN A 269 -26.95 -145.36 REMARK 500 ALA B 7 54.38 -92.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 275 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 140 SG REMARK 620 2 CYS A 143 SG 117.6 REMARK 620 3 CYS A 168 SG 106.4 107.0 REMARK 620 4 CYS A 170 SG 117.4 101.1 106.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 275 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U31 RELATED DB: PDB REMARK 900 PFSI2A COMPLEXED WITH BOTH H3K9 MYRISTOYL PEPTIDE AND NAD DBREF 3U3D A 1 273 UNP Q8IE47 Q8IE47_PLAF7 1 273 DBREF 3U3D B 4 15 PDB 3U3D 3U3D 4 15 SEQADV 3U3D GLY A -16 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D SER A -15 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D HIS A -14 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D MET A -13 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D ALA A -12 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D SER A -11 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D MET A -10 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D THR A -9 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D GLY A -8 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D GLY A -7 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D GLN A -6 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D GLN A -5 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D MET A -4 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D GLY A -3 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D ARG A -2 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D GLY A -1 UNP Q8IE47 EXPRESSION TAG SEQADV 3U3D SER A 0 UNP Q8IE47 EXPRESSION TAG SEQRES 1 A 290 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 290 GLY ARG GLY SER MET GLY ASN LEU MET ILE SER PHE LEU SEQRES 3 A 290 LYS LYS ASP THR GLN SER ILE THR LEU GLU GLU LEU ALA SEQRES 4 A 290 LYS ILE ILE LYS LYS CYS LYS HIS VAL VAL ALA LEU THR SEQRES 5 A 290 GLY SER GLY THR SER ALA GLU SER ASN ILE PRO SER PHE SEQRES 6 A 290 ARG GLY SER SER ASN SER ILE TRP SER LYS TYR ASP PRO SEQRES 7 A 290 ARG ILE TYR GLY THR ILE TRP GLY PHE TRP LYS TYR PRO SEQRES 8 A 290 GLU LYS ILE TRP GLU VAL ILE ARG ASP ILE SER SER ASP SEQRES 9 A 290 TYR GLU ILE GLU ILE ASN ASN GLY HIS VAL ALA LEU SER SEQRES 10 A 290 THR LEU GLU SER LEU GLY TYR LEU LYS SER VAL VAL THR SEQRES 11 A 290 GLN ASN VAL ASP GLY LEU HIS GLU ALA SER GLY ASN THR SEQRES 12 A 290 LYS VAL ILE SER LEU HIS GLY ASN VAL PHE GLU ALA VAL SEQRES 13 A 290 CYS CYS THR CYS ASN LYS ILE VAL LYS LEU ASN LYS ILE SEQRES 14 A 290 MET LEU GLN LYS THR SER HIS PHE MET HIS GLN LEU PRO SEQRES 15 A 290 PRO GLU CYS PRO CYS GLY GLY ILE PHE LYS PRO ASN ILE SEQRES 16 A 290 ILE LEU PHE GLY GLU VAL VAL SER SER ASP LEU LEU LYS SEQRES 17 A 290 GLU ALA GLU GLU GLU ILE ALA LYS CYS ASP LEU LEU LEU SEQRES 18 A 290 VAL ILE GLY THR SER SER THR VAL SER THR ALA THR ASN SEQRES 19 A 290 LEU CYS HIS PHE ALA CYS LYS LYS LYS LYS LYS ILE VAL SEQRES 20 A 290 GLU ILE ASN ILE SER LYS THR TYR ILE THR ASN LYS MET SEQRES 21 A 290 SER ASP TYR HIS VAL CYS ALA LYS PHE SER GLU LEU THR SEQRES 22 A 290 LYS VAL ALA ASN ILE LEU LYS GLY SER SER GLU LYS ASN SEQRES 23 A 290 LYS LYS ILE MET SEQRES 1 B 12 LYS GLN THR ALA ARG MYK SER THR GLY GLY TRP TRP MODRES 3U3D MYK B 9 LYS N~6~-TETRADECANOYL-L-LYSINE HET MYK B 9 24 HET GOL A 274 6 HET ZN A 275 1 HETNAM MYK N~6~-TETRADECANOYL-L-LYSINE HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN MYK N6-MYRISTOYL LYSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MYK C20 H40 N2 O3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *25(H2 O) HELIX 1 1 THR A 17 LYS A 27 1 11 HELIX 2 2 SER A 37 ASN A 44 5 8 HELIX 3 3 ILE A 55 TYR A 59 5 5 HELIX 4 4 ASP A 60 GLY A 65 1 6 HELIX 5 5 THR A 66 TYR A 73 1 8 HELIX 6 6 PRO A 74 TYR A 88 1 15 HELIX 7 7 ASN A 93 LEU A 105 1 13 HELIX 8 8 GLY A 118 SER A 123 1 6 HELIX 9 9 ASN A 150 GLN A 155 1 6 HELIX 10 10 SER A 186 LYS A 199 1 14 HELIX 11 11 VAL A 212 LYS A 225 1 14 HELIX 12 12 LYS A 251 GLU A 254 5 4 HELIX 13 13 LEU A 255 SER A 265 1 11 SHEET 1 A 7 GLN A 14 SER A 15 0 SHEET 2 A 7 TYR A 246 CYS A 249 1 O HIS A 247 N GLN A 14 SHEET 3 A 7 ILE A 229 ASN A 233 1 N GLU A 231 O VAL A 248 SHEET 4 A 7 LEU A 202 ILE A 206 1 N VAL A 205 O VAL A 230 SHEET 5 A 7 VAL A 31 THR A 35 1 N VAL A 32 O LEU A 204 SHEET 6 A 7 LEU A 108 THR A 113 1 O VAL A 112 N ALA A 33 SHEET 7 A 7 VAL A 128 SER A 130 1 O ILE A 129 N VAL A 111 SHEET 1 B 3 ILE A 146 LYS A 148 0 SHEET 2 B 3 GLY A 133 CYS A 140 -1 N ALA A 138 O VAL A 147 SHEET 3 B 3 PHE A 174 ILE A 178 -1 O LYS A 175 N VAL A 139 LINK C ARG B 8 N MYK B 9 1555 1555 1.34 LINK C MYK B 9 N SER B 10 1555 1555 1.33 LINK SG CYS A 140 ZN ZN A 275 1555 1555 2.38 LINK SG CYS A 143 ZN ZN A 275 1555 1555 2.28 LINK SG CYS A 168 ZN ZN A 275 1555 1555 1.99 LINK SG CYS A 170 ZN ZN A 275 1555 1555 2.18 CISPEP 1 LEU A 164 PRO A 165 0 -6.69 CISPEP 2 SER A 209 SER A 210 0 1.47 CISPEP 3 SER A 210 THR A 211 0 25.35 SITE 1 AC1 4 SER A 37 ASN A 115 VAL A 116 ASP A 117 SITE 1 AC2 4 CYS A 140 CYS A 143 CYS A 168 CYS A 170 CRYST1 32.511 103.328 105.512 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009478 0.00000