data_3U42 # _entry.id 3U42 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U42 RCSB RCSB068279 WWPDB D_1000068279 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2015-03-18 _pdbx_database_PDB_obs_spr.pdb_id 4REO _pdbx_database_PDB_obs_spr.replace_pdb_id 3U42 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1AD2 'RIBOSOMAL PROTEIN L1 MUTANT WITH SERINE 179 REPLACED BY CYSTEINE' unspecified PDB 3TG8 'MUTANT RIBOSOMAL PROTEIN L1 LACKING ALA158 FROM THERMUS THERMOPHILUS' unspecified PDB 3U4M . unspecified PDB 3U56 . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3U42 _pdbx_database_status.recvd_initial_deposition_date 2011-10-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gabdulkhakov, A.G.' 1 'Nevskaya, N.A.' 2 'Nikonov, S.V.' 3 # _citation.id primary _citation.title 'Mutant ribosomal protein l1 from thermus thermophilus with threonine 217 replaced by valine' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tishchenko, S.V.' 1 primary 'Nikonova, E.Y.' 2 primary 'Kostareva, O.S.' 3 primary 'Gabdulkhakov, A.G.' 4 primary 'Sarskikh, A.V.' 5 primary 'Piendl, W.' 6 primary 'Nikonov, S.V.' 7 primary 'Garber, M.B.' 8 primary 'Nevskaya, N.A.' 9 # _cell.entry_id 3U42 _cell.length_a 43.750 _cell.length_b 60.450 _cell.length_c 75.990 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U42 _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '50S ribosomal protein L1' 24865.727 1 ? V218R ? ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 4 non-polymer syn GLYCINE 75.067 3 ? ? ? ? 5 water nat water 18.015 146 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAK GEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAG RIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS ; _entity_poly.pdbx_seq_one_letter_code_can ;MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAK GEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAG RIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 LYS n 1 4 HIS n 1 5 GLY n 1 6 LYS n 1 7 ARG n 1 8 TYR n 1 9 ARG n 1 10 ALA n 1 11 LEU n 1 12 LEU n 1 13 GLU n 1 14 LYS n 1 15 VAL n 1 16 ASP n 1 17 PRO n 1 18 ASN n 1 19 LYS n 1 20 ILE n 1 21 TYR n 1 22 THR n 1 23 ILE n 1 24 ASP n 1 25 GLU n 1 26 ALA n 1 27 ALA n 1 28 HIS n 1 29 LEU n 1 30 VAL n 1 31 LYS n 1 32 GLU n 1 33 LEU n 1 34 ALA n 1 35 THR n 1 36 ALA n 1 37 LYS n 1 38 PHE n 1 39 ASP n 1 40 GLU n 1 41 THR n 1 42 VAL n 1 43 GLU n 1 44 VAL n 1 45 HIS n 1 46 ALA n 1 47 LYS n 1 48 LEU n 1 49 GLY n 1 50 ILE n 1 51 ASP n 1 52 PRO n 1 53 ARG n 1 54 ARG n 1 55 SER n 1 56 ASP n 1 57 GLN n 1 58 ASN n 1 59 VAL n 1 60 ARG n 1 61 GLY n 1 62 THR n 1 63 VAL n 1 64 SER n 1 65 LEU n 1 66 PRO n 1 67 HIS n 1 68 GLY n 1 69 LEU n 1 70 GLY n 1 71 LYS n 1 72 GLN n 1 73 VAL n 1 74 ARG n 1 75 VAL n 1 76 LEU n 1 77 ALA n 1 78 ILE n 1 79 ALA n 1 80 LYS n 1 81 GLY n 1 82 GLU n 1 83 LYS n 1 84 ILE n 1 85 LYS n 1 86 GLU n 1 87 ALA n 1 88 GLU n 1 89 GLU n 1 90 ALA n 1 91 GLY n 1 92 ALA n 1 93 ASP n 1 94 TYR n 1 95 VAL n 1 96 GLY n 1 97 GLY n 1 98 GLU n 1 99 GLU n 1 100 ILE n 1 101 ILE n 1 102 GLN n 1 103 LYS n 1 104 ILE n 1 105 LEU n 1 106 ASP n 1 107 GLY n 1 108 TRP n 1 109 MET n 1 110 ASP n 1 111 PHE n 1 112 ASP n 1 113 ALA n 1 114 VAL n 1 115 VAL n 1 116 ALA n 1 117 THR n 1 118 PRO n 1 119 ASP n 1 120 VAL n 1 121 MET n 1 122 GLY n 1 123 ALA n 1 124 VAL n 1 125 GLY n 1 126 SER n 1 127 LYS n 1 128 LEU n 1 129 GLY n 1 130 ARG n 1 131 ILE n 1 132 LEU n 1 133 GLY n 1 134 PRO n 1 135 ARG n 1 136 GLY n 1 137 LEU n 1 138 LEU n 1 139 PRO n 1 140 ASN n 1 141 PRO n 1 142 LYS n 1 143 ALA n 1 144 GLY n 1 145 THR n 1 146 VAL n 1 147 GLY n 1 148 PHE n 1 149 ASN n 1 150 ILE n 1 151 GLY n 1 152 GLU n 1 153 ILE n 1 154 ILE n 1 155 ARG n 1 156 GLU n 1 157 ILE n 1 158 LYS n 1 159 ALA n 1 160 GLY n 1 161 ARG n 1 162 ILE n 1 163 GLU n 1 164 PHE n 1 165 ARG n 1 166 ASN n 1 167 ASP n 1 168 LYS n 1 169 THR n 1 170 GLY n 1 171 ALA n 1 172 ILE n 1 173 HIS n 1 174 ALA n 1 175 PRO n 1 176 VAL n 1 177 GLY n 1 178 LYS n 1 179 ALA n 1 180 SER n 1 181 PHE n 1 182 PRO n 1 183 PRO n 1 184 GLU n 1 185 LYS n 1 186 LEU n 1 187 ALA n 1 188 ASP n 1 189 ASN n 1 190 ILE n 1 191 ARG n 1 192 ALA n 1 193 PHE n 1 194 ILE n 1 195 ARG n 1 196 ALA n 1 197 LEU n 1 198 GLU n 1 199 ALA n 1 200 HIS n 1 201 LYS n 1 202 PRO n 1 203 GLU n 1 204 GLY n 1 205 ALA n 1 206 LYS n 1 207 GLY n 1 208 THR n 1 209 PHE n 1 210 LEU n 1 211 ARG n 1 212 SER n 1 213 VAL n 1 214 TYR n 1 215 VAL n 1 216 THR n 1 217 THR n 1 218 VAL n 1 219 MET n 1 220 GLY n 1 221 PRO n 1 222 SER n 1 223 VAL n 1 224 ARG n 1 225 ILE n 1 226 ASN n 1 227 PRO n 1 228 HIS n 1 229 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rplA, rpl1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL11(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a-PL/TthL1T217V _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RL1_THETH _struct_ref.pdbx_db_accession P27150 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAK GEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAG RIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3U42 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 229 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P27150 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 229 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 228 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3U42 _struct_ref_seq_dif.mon_id VAL _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 218 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P27150 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 218 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 217 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3U42 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_percent_sol 39.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10 _exptl_crystal_grow.pdbx_details ;15 MG/ML L1 50 MM GLYCINE, METHANE PENTANEDIOL, 1.2 M AMMONIUM SULFATE EQUILIBRATED AGAINST 2.4 M AMMONIUM SULFATE 7% (V/V) METHANE PENTANEDIOL, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2011-03-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si-111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91841 # _reflns.entry_id 3U42 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.67 _reflns.d_resolution_high 1.35 _reflns.number_obs 44873 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.025 _reflns.pdbx_Rsym_value 0.029 _reflns.pdbx_netI_over_sigmaI 25.16 _reflns.B_iso_Wilson_estimate 22.3 _reflns.pdbx_redundancy 3.96 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.42 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.388 _reflns_shell.pdbx_Rsym_value 0.447 _reflns_shell.meanI_over_sigI_obs 3.53 _reflns_shell.pdbx_redundancy 3.95 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 6241 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3U42 _refine.ls_number_reflns_obs 44840 _refine.ls_number_reflns_all 45038 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.855 _refine.ls_d_res_high 1.350 _refine.ls_percent_reflns_obs 99.63 _refine.ls_R_factor_obs 0.1660 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1639 _refine.ls_R_factor_R_free 0.2058 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 2242 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -4.6412 _refine.aniso_B[2][2] 0.1491 _refine.aniso_B[3][3] 4.7985 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.427 _refine.solvent_model_param_bsol 52.396 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.95 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1AD2 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 16.76 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1680 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 1877 _refine_hist.d_res_high 1.350 _refine_hist.d_res_low 19.855 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1907 ? 'X-RAY DIFFRACTION' f_angle_d 1.093 ? ? 2603 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 12.545 ? ? 753 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.077 ? ? 293 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 342 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.3500 1.3982 4202 0.2195 100.00 0.2660 . . 221 . . 4202 . 'X-RAY DIFFRACTION' . 1.3982 1.4542 4197 0.1974 100.00 0.2410 . . 221 . . 4197 . 'X-RAY DIFFRACTION' . 1.4542 1.5204 4247 0.1780 100.00 0.2275 . . 223 . . 4247 . 'X-RAY DIFFRACTION' . 1.5204 1.6005 4190 0.1558 100.00 0.2246 . . 221 . . 4190 . 'X-RAY DIFFRACTION' . 1.6005 1.7007 4252 0.1614 100.00 0.2025 . . 224 . . 4252 . 'X-RAY DIFFRACTION' . 1.7007 1.8320 4251 0.1341 100.00 0.1875 . . 223 . . 4251 . 'X-RAY DIFFRACTION' . 1.8320 2.0161 4254 0.1322 100.00 0.1786 . . 224 . . 4254 . 'X-RAY DIFFRACTION' . 2.0161 2.3075 4275 0.1421 100.00 0.1775 . . 225 . . 4275 . 'X-RAY DIFFRACTION' . 2.3075 2.9058 4304 0.1626 99.00 0.1947 . . 227 . . 4304 . 'X-RAY DIFFRACTION' . 2.9058 19.8572 4426 0.1786 98.00 0.2202 . . 233 . . 4426 . 'X-RAY DIFFRACTION' # _struct.entry_id 3U42 _struct.title 'Mutant ribosomal protein l1 from thermus thermophilus with threonine 217 replaced by valine' _struct.pdbx_descriptor '50S ribosomal protein L1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U42 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'Rossmann Fold, RIBOSOMAL PROTEIN, rRNA BINDING, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 10 ? LYS A 14 ? ALA A 9 LYS A 13 5 ? 5 HELX_P HELX_P2 2 THR A 22 ? ALA A 34 ? THR A 21 ALA A 33 1 ? 13 HELX_P HELX_P3 3 ARG A 54 ? ASN A 58 ? ARG A 53 ASN A 57 5 ? 5 HELX_P HELX_P4 4 GLY A 81 ? ALA A 90 ? GLY A 80 ALA A 89 1 ? 10 HELX_P HELX_P5 5 GLU A 99 ? ASP A 106 ? GLU A 98 ASP A 105 1 ? 8 HELX_P HELX_P6 6 VAL A 120 ? GLY A 136 ? VAL A 119 GLY A 135 1 ? 17 HELX_P HELX_P7 7 ASN A 140 ? GLY A 144 ? ASN A 139 GLY A 143 5 ? 5 HELX_P HELX_P8 8 ASN A 149 ? ALA A 159 ? ASN A 148 ALA A 158 1 ? 11 HELX_P HELX_P9 9 PRO A 182 ? HIS A 200 ? PRO A 181 HIS A 199 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 171 ? LYS A 178 ? ALA A 170 LYS A 177 A 2 THR A 41 ? LEU A 48 ? THR A 40 LEU A 47 A 3 LEU A 210 ? THR A 216 ? LEU A 209 THR A 215 A 4 VAL A 223 ? ARG A 224 ? VAL A 222 ARG A 223 B 1 ARG A 60 ? SER A 64 ? ARG A 59 SER A 63 B 2 ARG A 161 ? ARG A 165 ? ARG A 160 ARG A 164 C 1 TYR A 94 ? GLY A 96 ? TYR A 93 GLY A 95 C 2 VAL A 75 ? ILE A 78 ? VAL A 74 ILE A 77 C 3 ALA A 113 ? ALA A 116 ? ALA A 112 ALA A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 176 ? O VAL A 175 N VAL A 42 ? N VAL A 41 A 2 3 N GLU A 43 ? N GLU A 42 O THR A 216 ? O THR A 215 A 3 4 N VAL A 215 ? N VAL A 214 O VAL A 223 ? O VAL A 222 B 1 2 N GLY A 61 ? N GLY A 60 O PHE A 164 ? O PHE A 163 C 1 2 O TYR A 94 ? O TYR A 93 N VAL A 75 ? N VAL A 74 C 2 3 N LEU A 76 ? N LEU A 75 O ALA A 113 ? O ALA A 112 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 229' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 230' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 231' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 232' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MPD A 233' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MPD A 234' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GLY A 235' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GLY A 236' AC9 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GLY A 237' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS A 19 ? LYS A 18 . ? 3_445 ? 2 AC1 5 GLY A 61 ? GLY A 60 . ? 1_555 ? 3 AC1 5 THR A 62 ? THR A 61 . ? 1_555 ? 4 AC1 5 HIS A 200 ? HIS A 199 . ? 1_555 ? 5 AC1 5 HOH K . ? HOH A 313 . ? 1_555 ? 6 AC2 8 GLU A 89 ? GLU A 88 . ? 3_555 ? 7 AC2 8 LYS A 142 ? LYS A 141 . ? 1_555 ? 8 AC2 8 ARG A 165 ? ARG A 164 . ? 1_555 ? 9 AC2 8 ASP A 167 ? ASP A 166 . ? 1_555 ? 10 AC2 8 LYS A 168 ? LYS A 167 . ? 1_555 ? 11 AC2 8 HOH K . ? HOH A 293 . ? 1_555 ? 12 AC2 8 HOH K . ? HOH A 309 . ? 1_555 ? 13 AC2 8 HOH K . ? HOH A 371 . ? 1_555 ? 14 AC3 7 ARG A 54 ? ARG A 53 . ? 4_544 ? 15 AC3 7 LYS A 80 ? LYS A 79 . ? 1_555 ? 16 AC3 7 GLY A 81 ? GLY A 80 . ? 1_555 ? 17 AC3 7 ILE A 84 ? ILE A 83 . ? 1_555 ? 18 AC3 7 GLU A 99 ? GLU A 98 . ? 1_555 ? 19 AC3 7 HOH K . ? HOH A 280 . ? 1_555 ? 20 AC3 7 HOH K . ? HOH A 350 . ? 1_555 ? 21 AC4 6 PRO A 66 ? PRO A 65 . ? 1_555 ? 22 AC4 6 HIS A 67 ? HIS A 66 . ? 1_555 ? 23 AC4 6 GLY A 68 ? GLY A 67 . ? 1_555 ? 24 AC4 6 GLN A 72 ? GLN A 71 . ? 1_555 ? 25 AC4 6 LYS A 185 ? LYS A 184 . ? 1_555 ? 26 AC4 6 HOH K . ? HOH A 341 . ? 1_555 ? 27 AC5 5 GLY A 68 ? GLY A 67 . ? 1_555 ? 28 AC5 5 VAL A 73 ? VAL A 72 . ? 1_555 ? 29 AC5 5 GLY A 177 ? GLY A 176 . ? 1_555 ? 30 AC5 5 LYS A 178 ? LYS A 177 . ? 1_555 ? 31 AC5 5 HOH K . ? HOH A 317 . ? 1_555 ? 32 AC6 5 ARG A 53 ? ARG A 52 . ? 1_555 ? 33 AC6 5 GLY A 91 ? GLY A 90 . ? 4_545 ? 34 AC6 5 LYS A 168 ? LYS A 167 . ? 2_556 ? 35 AC6 5 HOH K . ? HOH A 278 . ? 4_545 ? 36 AC6 5 HOH K . ? HOH A 344 . ? 2_556 ? 37 AC7 5 GLU A 198 ? GLU A 197 . ? 1_555 ? 38 AC7 5 LYS A 201 ? LYS A 200 . ? 1_555 ? 39 AC7 5 THR A 208 ? THR A 207 . ? 1_555 ? 40 AC7 5 PHE A 209 ? PHE A 208 . ? 1_555 ? 41 AC7 5 LEU A 210 ? LEU A 209 . ? 1_555 ? 42 AC8 3 THR A 35 ? THR A 34 . ? 1_555 ? 43 AC8 3 ALA A 36 ? ALA A 35 . ? 1_555 ? 44 AC8 3 ARG A 74 ? ARG A 73 . ? 2_555 ? 45 AC9 6 PRO A 52 ? PRO A 51 . ? 1_555 ? 46 AC9 6 ARG A 53 ? ARG A 52 . ? 1_555 ? 47 AC9 6 SER A 55 ? SER A 54 . ? 1_555 ? 48 AC9 6 ASN A 58 ? ASN A 57 . ? 1_555 ? 49 AC9 6 TYR A 94 ? TYR A 93 . ? 4_545 ? 50 AC9 6 HOH K . ? HOH A 277 . ? 4_545 ? # _database_PDB_matrix.entry_id 3U42 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3U42 _atom_sites.fract_transf_matrix[1][1] 0.022857 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016543 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013160 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 PRO 2 1 ? ? ? A . n A 1 3 LYS 3 2 ? ? ? A . n A 1 4 HIS 4 3 ? ? ? A . n A 1 5 GLY 5 4 ? ? ? A . n A 1 6 LYS 6 5 ? ? ? A . n A 1 7 ARG 7 6 ? ? ? A . n A 1 8 TYR 8 7 ? ? ? A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 ASP 16 15 15 ASP ASP A . n A 1 17 PRO 17 16 16 PRO PRO A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 ILE 20 19 19 ILE ILE A . n A 1 21 TYR 21 20 20 TYR TYR A . n A 1 22 THR 22 21 21 THR THR A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 HIS 28 27 27 HIS HIS A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 THR 35 34 34 THR THR A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 PHE 38 37 37 PHE PHE A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 HIS 45 44 44 HIS HIS A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 PRO 52 51 51 PRO PRO A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 ARG 54 53 53 ARG ARG A . n A 1 55 SER 55 54 54 SER SER A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 GLN 57 56 56 GLN GLN A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 PRO 66 65 65 PRO PRO A . n A 1 67 HIS 67 66 66 HIS HIS A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 GLN 72 71 71 GLN GLN A . n A 1 73 VAL 73 72 72 VAL VAL A . n A 1 74 ARG 74 73 73 ARG ARG A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 ALA 77 76 76 ALA ALA A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 LYS 80 79 79 LYS LYS A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 LYS 85 84 84 LYS LYS A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 GLU 89 88 88 GLU GLU A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 TYR 94 93 93 TYR TYR A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 GLY 96 95 95 GLY GLY A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 GLN 102 101 101 GLN GLN A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 TRP 108 107 107 TRP TRP A . n A 1 109 MET 109 108 108 MET MET A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 ASP 112 111 111 ASP ASP A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 ASP 119 118 118 ASP ASP A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 MET 121 120 120 MET MET A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 SER 126 125 125 SER SER A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 GLY 136 135 135 GLY GLY A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 LEU 138 137 137 LEU LEU A . n A 1 139 PRO 139 138 138 PRO PRO A . n A 1 140 ASN 140 139 139 ASN ASN A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 THR 145 144 144 THR THR A . n A 1 146 VAL 146 145 145 VAL VAL A . n A 1 147 GLY 147 146 146 GLY GLY A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 ASN 149 148 148 ASN ASN A . n A 1 150 ILE 150 149 149 ILE ILE A . n A 1 151 GLY 151 150 150 GLY GLY A . n A 1 152 GLU 152 151 151 GLU GLU A . n A 1 153 ILE 153 152 152 ILE ILE A . n A 1 154 ILE 154 153 153 ILE ILE A . n A 1 155 ARG 155 154 154 ARG ARG A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 ILE 157 156 156 ILE ILE A . n A 1 158 LYS 158 157 157 LYS LYS A . n A 1 159 ALA 159 158 158 ALA ALA A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 ARG 161 160 160 ARG ARG A . n A 1 162 ILE 162 161 161 ILE ILE A . n A 1 163 GLU 163 162 162 GLU GLU A . n A 1 164 PHE 164 163 163 PHE PHE A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 ASN 166 165 165 ASN ASN A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 THR 169 168 168 THR THR A . n A 1 170 GLY 170 169 169 GLY GLY A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 ILE 172 171 171 ILE ILE A . n A 1 173 HIS 173 172 172 HIS HIS A . n A 1 174 ALA 174 173 173 ALA ALA A . n A 1 175 PRO 175 174 174 PRO PRO A . n A 1 176 VAL 176 175 175 VAL VAL A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 ALA 179 178 178 ALA ALA A . n A 1 180 SER 180 179 179 SER SER A . n A 1 181 PHE 181 180 180 PHE PHE A . n A 1 182 PRO 182 181 181 PRO PRO A . n A 1 183 PRO 183 182 182 PRO PRO A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 LYS 185 184 184 LYS LYS A . n A 1 186 LEU 186 185 185 LEU LEU A . n A 1 187 ALA 187 186 186 ALA ALA A . n A 1 188 ASP 188 187 187 ASP ASP A . n A 1 189 ASN 189 188 188 ASN ASN A . n A 1 190 ILE 190 189 189 ILE ILE A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 ALA 192 191 191 ALA ALA A . n A 1 193 PHE 193 192 192 PHE PHE A . n A 1 194 ILE 194 193 193 ILE ILE A . n A 1 195 ARG 195 194 194 ARG ARG A . n A 1 196 ALA 196 195 195 ALA ALA A . n A 1 197 LEU 197 196 196 LEU LEU A . n A 1 198 GLU 198 197 197 GLU GLU A . n A 1 199 ALA 199 198 198 ALA ALA A . n A 1 200 HIS 200 199 199 HIS HIS A . n A 1 201 LYS 201 200 200 LYS LYS A . n A 1 202 PRO 202 201 201 PRO PRO A . n A 1 203 GLU 203 202 202 GLU GLU A . n A 1 204 GLY 204 203 203 GLY GLY A . n A 1 205 ALA 205 204 204 ALA ALA A . n A 1 206 LYS 206 205 205 LYS LYS A . n A 1 207 GLY 207 206 206 GLY GLY A . n A 1 208 THR 208 207 207 THR THR A . n A 1 209 PHE 209 208 208 PHE PHE A . n A 1 210 LEU 210 209 209 LEU LEU A . n A 1 211 ARG 211 210 210 ARG ARG A . n A 1 212 SER 212 211 211 SER SER A . n A 1 213 VAL 213 212 212 VAL VAL A . n A 1 214 TYR 214 213 213 TYR TYR A . n A 1 215 VAL 215 214 214 VAL VAL A . n A 1 216 THR 216 215 215 THR THR A . n A 1 217 THR 217 216 216 THR THR A . n A 1 218 VAL 218 217 217 VAL VAL A . n A 1 219 MET 219 218 218 MET MET A . n A 1 220 GLY 220 219 219 GLY GLY A . n A 1 221 PRO 221 220 220 PRO PRO A . n A 1 222 SER 222 221 221 SER SER A . n A 1 223 VAL 223 222 222 VAL VAL A . n A 1 224 ARG 224 223 223 ARG ARG A . n A 1 225 ILE 225 224 224 ILE ILE A . n A 1 226 ASN 226 225 225 ASN ASN A . n A 1 227 PRO 227 226 226 PRO PRO A . n A 1 228 HIS 228 227 227 HIS HIS A . n A 1 229 SER 229 228 228 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 229 1 SO4 SO4 A . C 2 SO4 1 230 2 SO4 SO4 A . D 2 SO4 1 231 3 SO4 SO4 A . E 2 SO4 1 232 4 SO4 SO4 A . F 3 MPD 1 233 5 MPD MPD A . G 3 MPD 1 234 6 MPD MPD A . H 4 GLY 1 235 7 GLY GLY A . I 4 GLY 1 236 8 GLY GLY A . J 4 GLY 1 237 10 GLY GLY A . K 5 HOH 1 238 1 HOH HOH A . K 5 HOH 2 239 2 HOH HOH A . K 5 HOH 3 240 3 HOH HOH A . K 5 HOH 4 241 4 HOH HOH A . K 5 HOH 5 242 5 HOH HOH A . K 5 HOH 6 243 6 HOH HOH A . K 5 HOH 7 244 7 HOH HOH A . K 5 HOH 8 245 8 HOH HOH A . K 5 HOH 9 246 9 HOH HOH A . K 5 HOH 10 247 10 HOH HOH A . K 5 HOH 11 248 11 HOH HOH A . K 5 HOH 12 249 12 HOH HOH A . K 5 HOH 13 250 13 HOH HOH A . K 5 HOH 14 251 14 HOH HOH A . K 5 HOH 15 252 15 HOH HOH A . K 5 HOH 16 253 16 HOH HOH A . K 5 HOH 17 254 17 HOH HOH A . K 5 HOH 18 255 18 HOH HOH A . K 5 HOH 19 256 19 HOH HOH A . K 5 HOH 20 257 20 HOH HOH A . K 5 HOH 21 258 21 HOH HOH A . K 5 HOH 22 259 22 HOH HOH A . K 5 HOH 23 260 23 HOH HOH A . K 5 HOH 24 261 24 HOH HOH A . K 5 HOH 25 262 25 HOH HOH A . K 5 HOH 26 263 26 HOH HOH A . K 5 HOH 27 264 27 HOH HOH A . K 5 HOH 28 265 28 HOH HOH A . K 5 HOH 29 266 29 HOH HOH A . K 5 HOH 30 267 30 HOH HOH A . K 5 HOH 31 268 31 HOH HOH A . K 5 HOH 32 269 32 HOH HOH A . K 5 HOH 33 270 33 HOH HOH A . K 5 HOH 34 271 34 HOH HOH A . K 5 HOH 35 272 35 HOH HOH A . K 5 HOH 36 273 36 HOH HOH A . K 5 HOH 37 274 37 HOH HOH A . K 5 HOH 38 275 38 HOH HOH A . K 5 HOH 39 276 39 HOH HOH A . K 5 HOH 40 277 41 HOH HOH A . K 5 HOH 41 278 42 HOH HOH A . K 5 HOH 42 279 43 HOH HOH A . K 5 HOH 43 280 44 HOH HOH A . K 5 HOH 44 281 45 HOH HOH A . K 5 HOH 45 282 46 HOH HOH A . K 5 HOH 46 283 47 HOH HOH A . K 5 HOH 47 284 48 HOH HOH A . K 5 HOH 48 285 49 HOH HOH A . K 5 HOH 49 286 50 HOH HOH A . K 5 HOH 50 287 51 HOH HOH A . K 5 HOH 51 288 52 HOH HOH A . K 5 HOH 52 289 53 HOH HOH A . K 5 HOH 53 290 54 HOH HOH A . K 5 HOH 54 291 55 HOH HOH A . K 5 HOH 55 292 56 HOH HOH A . K 5 HOH 56 293 57 HOH HOH A . K 5 HOH 57 294 58 HOH HOH A . K 5 HOH 58 295 59 HOH HOH A . K 5 HOH 59 296 60 HOH HOH A . K 5 HOH 60 297 61 HOH HOH A . K 5 HOH 61 298 62 HOH HOH A . K 5 HOH 62 299 63 HOH HOH A . K 5 HOH 63 300 64 HOH HOH A . K 5 HOH 64 301 65 HOH HOH A . K 5 HOH 65 302 66 HOH HOH A . K 5 HOH 66 303 67 HOH HOH A . K 5 HOH 67 304 68 HOH HOH A . K 5 HOH 68 305 69 HOH HOH A . K 5 HOH 69 306 70 HOH HOH A . K 5 HOH 70 307 71 HOH HOH A . K 5 HOH 71 308 72 HOH HOH A . K 5 HOH 72 309 73 HOH HOH A . K 5 HOH 73 310 74 HOH HOH A . K 5 HOH 74 311 75 HOH HOH A . K 5 HOH 75 312 76 HOH HOH A . K 5 HOH 76 313 77 HOH HOH A . K 5 HOH 77 314 78 HOH HOH A . K 5 HOH 78 315 79 HOH HOH A . K 5 HOH 79 316 80 HOH HOH A . K 5 HOH 80 317 81 HOH HOH A . K 5 HOH 81 318 82 HOH HOH A . K 5 HOH 82 319 83 HOH HOH A . K 5 HOH 83 320 84 HOH HOH A . K 5 HOH 84 321 85 HOH HOH A . K 5 HOH 85 322 86 HOH HOH A . K 5 HOH 86 323 87 HOH HOH A . K 5 HOH 87 324 88 HOH HOH A . K 5 HOH 88 325 89 HOH HOH A . K 5 HOH 89 326 90 HOH HOH A . K 5 HOH 90 327 91 HOH HOH A . K 5 HOH 91 328 92 HOH HOH A . K 5 HOH 92 329 93 HOH HOH A . K 5 HOH 93 330 94 HOH HOH A . K 5 HOH 94 331 95 HOH HOH A . K 5 HOH 95 332 96 HOH HOH A . K 5 HOH 96 333 97 HOH HOH A . K 5 HOH 97 334 98 HOH HOH A . K 5 HOH 98 335 99 HOH HOH A . K 5 HOH 99 336 100 HOH HOH A . K 5 HOH 100 337 101 HOH HOH A . K 5 HOH 101 338 102 HOH HOH A . K 5 HOH 102 339 103 HOH HOH A . K 5 HOH 103 340 104 HOH HOH A . K 5 HOH 104 341 105 HOH HOH A . K 5 HOH 105 342 106 HOH HOH A . K 5 HOH 106 343 107 HOH HOH A . K 5 HOH 107 344 108 HOH HOH A . K 5 HOH 108 345 109 HOH HOH A . K 5 HOH 109 346 110 HOH HOH A . K 5 HOH 110 347 111 HOH HOH A . K 5 HOH 111 348 112 HOH HOH A . K 5 HOH 112 349 113 HOH HOH A . K 5 HOH 113 350 114 HOH HOH A . K 5 HOH 114 351 115 HOH HOH A . K 5 HOH 115 352 116 HOH HOH A . K 5 HOH 116 353 117 HOH HOH A . K 5 HOH 117 354 118 HOH HOH A . K 5 HOH 118 355 119 HOH HOH A . K 5 HOH 119 356 120 HOH HOH A . K 5 HOH 120 357 121 HOH HOH A . K 5 HOH 121 358 122 HOH HOH A . K 5 HOH 122 359 123 HOH HOH A . K 5 HOH 123 360 124 HOH HOH A . K 5 HOH 124 361 125 HOH HOH A . K 5 HOH 125 362 126 HOH HOH A . K 5 HOH 126 363 127 HOH HOH A . K 5 HOH 127 364 128 HOH HOH A . K 5 HOH 128 365 129 HOH HOH A . K 5 HOH 129 366 130 HOH HOH A . K 5 HOH 130 367 131 HOH HOH A . K 5 HOH 131 368 132 HOH HOH A . K 5 HOH 132 369 133 HOH HOH A . K 5 HOH 133 370 134 HOH HOH A . K 5 HOH 134 371 135 HOH HOH A . K 5 HOH 135 372 136 HOH HOH A . K 5 HOH 136 373 137 HOH HOH A . K 5 HOH 137 374 138 HOH HOH A . K 5 HOH 138 375 139 HOH HOH A . K 5 HOH 139 376 140 HOH HOH A . K 5 HOH 140 377 141 HOH HOH A . K 5 HOH 141 378 142 HOH HOH A . K 5 HOH 142 379 143 HOH HOH A . K 5 HOH 143 380 144 HOH HOH A . K 5 HOH 144 381 145 HOH HOH A . K 5 HOH 145 382 146 HOH HOH A . K 5 HOH 146 383 147 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 249 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-31 2 'Structure model' 1 1 2015-03-18 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data collection' . ? 1 PHASER 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.7.1_743)' ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 PHASER phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 9 ? A -47.57 -10.02 2 1 LEU A 10 ? A -64.24 18.67 3 1 LEU A 10 ? B -30.52 -25.77 4 1 MET A 108 ? ? -144.25 38.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A PRO 1 ? A PRO 2 3 1 Y 1 A LYS 2 ? A LYS 3 4 1 Y 1 A HIS 3 ? A HIS 4 5 1 Y 1 A GLY 4 ? A GLY 5 6 1 Y 1 A LYS 5 ? A LYS 6 7 1 Y 1 A ARG 6 ? A ARG 7 8 1 Y 1 A TYR 7 ? A TYR 8 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 GLYCINE GLY 5 water HOH #