HEADER TRANSFERASE 07-OCT-11 3U4G TITLE THE STRUCTURE OF COBT FROM PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAMN:DMB PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UPF0284 PROTEIN PH0034; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH0034; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED P11 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, PUTATIVE NICOTINATE-NUCLEOTIDE-DIMETHYLBENZIMIDAZOLE KEYWDS 3 PHOSPHORIBOSYLTRANSFERASE, DMB-PRT, COBT, COENZYME METABOLISM, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.EVDOKIMOVA,A.MURSLEEN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3U4G 1 REMARK REVDAT 1 21-DEC-11 3U4G 0 JRNL AUTH M.E.CUFF,E.EVDOKIMOVA,A.MURSLEEN,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE STRUCTURE OF COBT FROM PYROCOCCUS HORIKOSHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 25516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1780 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2481 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : -0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.295 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2619 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1797 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3558 ; 1.710 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4427 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 5.771 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.109 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;14.980 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2902 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 492 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2519 27.0182 4.6661 REMARK 3 T TENSOR REMARK 3 T11: 0.0569 T22: 0.1147 REMARK 3 T33: 0.1128 T12: 0.0536 REMARK 3 T13: -0.0552 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.5617 L22: 0.9437 REMARK 3 L33: 2.0765 L12: 0.0918 REMARK 3 L13: 0.0623 L23: 0.0371 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: -0.0324 S13: -0.2951 REMARK 3 S21: 0.0758 S22: -0.0367 S23: -0.1737 REMARK 3 S31: 0.2815 S32: 0.3777 S33: -0.0976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3U4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97953 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, 25% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.27133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.54267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.27133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.54267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -41.37550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 71.66447 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 160 REMARK 465 LYS A 161 REMARK 465 THR A 162 REMARK 465 SER A 163 REMARK 465 SER A 164 REMARK 465 ALA A 165 REMARK 465 SER A 166 REMARK 465 PRO A 167 REMARK 465 GLU A 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LEU A 334 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 116 CD GLU A 116 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 268 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 258 107.83 -45.67 REMARK 500 VAL A 297 -72.39 70.50 REMARK 500 LYS A 298 -34.36 71.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 339 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC102145 RELATED DB: TARGETDB DBREF 3U4G A 1 335 UNP O57746 Y034_PYRHO 1 335 SEQADV 3U4G GLY A -1 UNP O57746 EXPRESSION TAG SEQADV 3U4G HIS A 0 UNP O57746 EXPRESSION TAG SEQRES 1 A 337 GLY HIS MSE LYS LYS VAL LYS SER LEU PHE LEU LEU VAL SEQRES 2 A 337 LEU GLY ASN THR GLU ILE SER THR ILE PRO GLY ILE SER SEQRES 3 A 337 VAL ALA GLY ALA THR PRO GLU LEU THR LYS ILE THR PRO SEQRES 4 A 337 VAL ALA ASP ALA GLU TYR LEU PHE TYR GLU LYS PRO LEU SEQRES 5 A 337 THR ILE ASP THR ILE PRO VAL THR PRO GLU GLY HIS PRO SEQRES 6 A 337 THR PRO ALA ILE ILE THR LYS ALA ALA ARG GLU LEU SER SEQRES 7 A 337 ASN PHE PRO ILE LEU VAL VAL ARG GLY GLY THR TYR LEU SEQRES 8 A 337 ALA PRO LEU ILE PRO HIS VAL HIS ILE SER ASN VAL VAL SEQRES 9 A 337 GLY ARG ASP PHE ARG ARG GLU PRO ALA LEU PRO GLU VAL SEQRES 10 A 337 GLU VAL ILE ILE GLU ARG ALA LYS LEU LEU GLY LYS GLU SEQRES 11 A 337 LEU GLU LYS ILE ALA ASN GLU ILE VAL ILE GLY GLU SER SEQRES 12 A 337 THR PRO GLY GLY THR THR THR ALA GLN ALA ILE LEU TRP SEQRES 13 A 337 ALA LEU GLY TYR GLU ALA LYS THR SER SER ALA SER PRO SEQRES 14 A 337 GLU ASN PRO GLN GLU LEU LYS GLU LYS VAL ILE LYS GLU SEQRES 15 A 337 GLY PHE LYS ARG VAL GLY ILE GLU LYS GLY GLY LEU LYS SEQRES 16 A 337 ASP LYS PRO LEU GLU ALA LEU LYS GLU PHE GLY ASP PRO SEQRES 17 A 337 MSE ILE ALA THR VAL LEU GLY LEU SER LEU GLY PHE GLY SEQRES 18 A 337 GLY ASP VAL VAL LEU ALA GLY GLY THR GLN MSE LEU ALA SEQRES 19 A 337 VAL SER ALA LEU LEU LYS SER LEU GLY GLU ASP LEU SER SEQRES 20 A 337 ARG PHE MSE ILE ALA THR THR ARG TRP VAL VAL GLU ASP SEQRES 21 A 337 PRO SER ALA THR PHE ILE GLU THR ALA ARG GLU ILE GLY SEQRES 22 A 337 ILE ILE SER TYR VAL ALA GLU LEU ASP PHE SER LYS SER SEQRES 23 A 337 LYS PHE LYS GLY LEU ARG ASP TYR GLU ARG GLY TYR VAL SEQRES 24 A 337 LYS GLU GLY VAL GLY ALA GLY GLY ALA THR TRP LEU ALA SEQRES 25 A 337 VAL LYS ALA GLY TYR SER PRO GLU ASP VAL SER LYS LYS SEQRES 26 A 337 VAL GLU GLU LEU TYR GLU ARG LEU MSE GLY LEU ARG MODRES 3U4G MSE A 1 MET SELENOMETHIONINE MODRES 3U4G MSE A 207 MET SELENOMETHIONINE MODRES 3U4G MSE A 230 MET SELENOMETHIONINE MODRES 3U4G MSE A 248 MET SELENOMETHIONINE MODRES 3U4G MSE A 332 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 207 8 HET MSE A 230 8 HET MSE A 248 8 HET MSE A 332 8 HET SO4 A 336 5 HET SO4 A 337 5 HET ACY A 338 4 HET ACY A 339 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACY 2(C2 H4 O2) FORMUL 6 HOH *150(H2 O) HELIX 1 1 THR A 15 ILE A 20 5 6 HELIX 2 2 PRO A 30 LYS A 34 5 5 HELIX 3 3 ILE A 35 TYR A 46 1 12 HELIX 4 4 PRO A 65 ASN A 77 1 13 HELIX 5 5 GLU A 114 GLU A 130 1 17 HELIX 6 6 GLY A 144 LEU A 156 1 13 HELIX 7 7 PRO A 170 GLY A 186 1 17 HELIX 8 8 LYS A 195 GLY A 204 1 10 HELIX 9 9 ASP A 205 PHE A 218 1 14 HELIX 10 10 GLY A 227 LEU A 240 1 14 HELIX 11 11 ARG A 253 ASP A 258 1 6 HELIX 12 12 THR A 262 GLY A 271 1 10 HELIX 13 13 PHE A 286 ASP A 291 1 6 HELIX 14 14 TYR A 292 GLY A 295 5 4 HELIX 15 15 GLY A 302 ALA A 313 1 12 HELIX 16 16 SER A 316 LEU A 331 1 16 SHEET 1 A 7 VAL A 96 HIS A 97 0 SHEET 2 A 7 ILE A 80 GLY A 86 1 N ARG A 84 O VAL A 96 SHEET 3 A 7 LEU A 7 GLY A 13 1 N LEU A 10 O VAL A 83 SHEET 4 A 7 GLU A 135 SER A 141 1 O GLY A 139 N LEU A 9 SHEET 5 A 7 ASP A 221 ALA A 225 1 O VAL A 223 N ILE A 138 SHEET 6 A 7 PHE A 247 THR A 252 1 O MSE A 248 N LEU A 224 SHEET 7 A 7 ILE A 273 ALA A 277 1 O TYR A 275 N ILE A 249 LINK C MSE A 1 N ALYS A 2 1555 1555 1.33 LINK C MSE A 1 N BLYS A 2 1555 1555 1.32 LINK C PRO A 206 N MSE A 207 1555 1555 1.32 LINK C MSE A 207 N ILE A 208 1555 1555 1.33 LINK C GLN A 229 N MSE A 230 1555 1555 1.33 LINK C MSE A 230 N LEU A 231 1555 1555 1.34 LINK C PHE A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N ILE A 249 1555 1555 1.33 LINK C LEU A 331 N MSE A 332 1555 1555 1.33 LINK C MSE A 332 N GLY A 333 1555 1555 1.34 SITE 1 AC1 7 SER A 24 PRO A 143 GLY A 144 GLY A 145 SITE 2 AC1 7 THR A 146 HOH A 371 HOH A 397 SITE 1 AC2 6 ARG A 84 TYR A 88 ASN A 100 HOH A 349 SITE 2 AC2 6 HOH A 420 HOH A 421 SITE 1 AC3 6 ALA A 26 VAL A 57 THR A 58 THR A 64 SITE 2 AC3 6 HOH A 350 HOH A 419 SITE 1 AC4 4 ASP A 105 ARG A 107 ARG A 108 GLU A 180 CRYST1 82.751 82.751 84.814 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012084 0.006977 0.000000 0.00000 SCALE2 0.000000 0.013954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011791 0.00000 HETATM 1 N MSE A 1 -18.985 42.809 28.083 1.00 53.06 N ANISOU 1 N MSE A 1 7148 8023 4989 -578 593 -656 N HETATM 2 CA MSE A 1 -19.615 42.634 26.745 1.00 48.94 C ANISOU 2 CA MSE A 1 6564 7392 4639 -498 612 -600 C HETATM 3 C MSE A 1 -19.398 41.202 26.305 1.00 44.65 C ANISOU 3 C MSE A 1 5958 6860 4146 -539 532 -428 C HETATM 4 O MSE A 1 -18.302 40.839 25.895 1.00 45.42 O ANISOU 4 O MSE A 1 6066 6897 4292 -574 431 -379 O HETATM 5 CB MSE A 1 -19.009 43.587 25.712 1.00 50.70 C ANISOU 5 CB MSE A 1 6827 7441 4993 -455 586 -674 C