HEADER HYDROLASE/HYDROLASE INHIBITOR 08-OCT-11 3U4H TITLE CD38 STRUCTURE-BASED INHIBITOR DESIGN USING THE N1-CYCLIC INOSINE 5'- TITLE 2 DIPHOSPHATE RIBOSE TEMPLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYL CYCLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, ENZYMATIC DOMAIN; COMPND 5 SYNONYM: CYCLIC ADP-RIBOSE HYDROLASE 1, CADPR HYDROLASE 1, T10; COMPND 6 EC: 3.2.2.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS NON-HYDROLYZABLE INHIBITOR, TWO DOMAINS, CADPR CYCLIZATION, KEYWDS 2 HYDROLYSIS, 8-AMINO-N1-CIDPR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.LIU,Q.HAO,H.C.LEE,R.GRAEFF REVDAT 3 01-NOV-23 3U4H 1 REMARK SEQADV REVDAT 2 24-JUL-13 3U4H 1 JRNL REVDAT 1 10-OCT-12 3U4H 0 JRNL AUTH C.MOREAU,Q.LIU,R.GRAEFF,G.K.WAGNER,M.P.THOMAS,J.M.SWARBRICK, JRNL AUTH 2 S.SHUTO,H.C.LEE,Q.HAO,B.V.L.POTTER JRNL TITL CD38 STRUCTURE-BASED INHIBITOR DESIGN USING THE N1-CYCLIC JRNL TITL 2 INOSINE 5'-DIPHOSPHATE RIBOSE TEMPLATE JRNL REF PLOS ONE V. 8 66247 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23840430 JRNL DOI 10.1371/JOURNAL.PONE.0066247 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 38873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.2479 - 4.5174 0.99 2944 149 0.1797 0.2303 REMARK 3 2 4.5174 - 3.5889 0.99 2939 157 0.1551 0.1972 REMARK 3 3 3.5889 - 3.1362 0.99 2914 168 0.1742 0.2071 REMARK 3 4 3.1362 - 2.8499 0.99 2913 151 0.1845 0.2629 REMARK 3 5 2.8499 - 2.6459 0.98 2939 144 0.1880 0.2762 REMARK 3 6 2.6459 - 2.4900 0.98 2877 157 0.1817 0.2115 REMARK 3 7 2.4900 - 2.3654 0.98 2902 173 0.1879 0.2603 REMARK 3 8 2.3654 - 2.2625 0.97 2864 133 0.1926 0.2515 REMARK 3 9 2.2625 - 2.1755 0.94 2780 153 0.1940 0.2492 REMARK 3 10 2.1755 - 2.1004 0.90 2684 133 0.1984 0.2618 REMARK 3 11 2.1004 - 2.0348 0.83 2461 132 0.2143 0.2716 REMARK 3 12 2.0348 - 1.9766 0.77 2259 115 0.2128 0.3083 REMARK 3 13 1.9766 - 1.9246 0.69 2058 100 0.2244 0.2748 REMARK 3 14 1.9246 - 1.8777 0.47 1391 83 0.2478 0.3575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.98430 REMARK 3 B22 (A**2) : -0.76230 REMARK 3 B33 (A**2) : 10.74670 REMARK 3 B12 (A**2) : -0.27570 REMARK 3 B13 (A**2) : 1.57100 REMARK 3 B23 (A**2) : -7.14100 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4223 REMARK 3 ANGLE : 1.125 5724 REMARK 3 CHIRALITY : 0.072 618 REMARK 3 PLANARITY : 0.004 726 REMARK 3 DIHEDRAL : 20.902 1564 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 48:117) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1939 -13.5476 4.3522 REMARK 3 T TENSOR REMARK 3 T11: 0.1388 T22: 0.0707 REMARK 3 T33: 0.3978 T12: -0.0085 REMARK 3 T13: -0.0611 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 2.5945 L22: 1.4410 REMARK 3 L33: 0.8500 L12: 0.7236 REMARK 3 L13: 0.3481 L23: 0.4175 REMARK 3 S TENSOR REMARK 3 S11: 0.2309 S12: -0.0378 S13: -0.9546 REMARK 3 S21: 0.0772 S22: -0.0333 S23: -0.2245 REMARK 3 S31: 0.1329 S32: 0.0081 S33: -0.1118 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 118:146) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0493 3.1432 -3.4854 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.0783 REMARK 3 T33: 0.1082 T12: 0.0321 REMARK 3 T13: 0.0142 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.6864 L22: 1.6785 REMARK 3 L33: 0.2209 L12: 0.6953 REMARK 3 L13: -0.0048 L23: 0.4138 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: 0.0332 S13: -0.2455 REMARK 3 S21: -0.1176 S22: 0.0040 S23: -0.2709 REMARK 3 S31: 0.0969 S32: -0.0094 S33: -0.0636 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 147:193) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1828 -9.6914 -0.2796 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.0692 REMARK 3 T33: 0.3265 T12: -0.0010 REMARK 3 T13: -0.0410 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.3966 L22: 0.7412 REMARK 3 L33: 0.4251 L12: -0.6807 REMARK 3 L13: 0.0245 L23: 0.3367 REMARK 3 S TENSOR REMARK 3 S11: 0.2182 S12: 0.0593 S13: -0.8379 REMARK 3 S21: -0.0069 S22: -0.1258 S23: 0.2179 REMARK 3 S31: 0.0232 S32: -0.0695 S33: -0.0626 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 194:244) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7300 10.6547 1.0198 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.1168 REMARK 3 T33: 0.1060 T12: 0.0036 REMARK 3 T13: -0.0035 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.3225 L22: 1.2206 REMARK 3 L33: 0.6207 L12: -0.0343 REMARK 3 L13: -0.2062 L23: 0.6913 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: 0.0754 S13: 0.0880 REMARK 3 S21: -0.0745 S22: -0.1498 S23: 0.1442 REMARK 3 S31: 0.0346 S32: -0.1205 S33: 0.0930 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 250:275) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5756 20.6396 -2.0826 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: -0.0072 REMARK 3 T33: 0.1585 T12: 0.1674 REMARK 3 T13: -0.0592 T23: 0.1798 REMARK 3 L TENSOR REMARK 3 L11: 1.0062 L22: 0.3744 REMARK 3 L33: 0.5041 L12: 0.5113 REMARK 3 L13: 0.2588 L23: -0.0406 REMARK 3 S TENSOR REMARK 3 S11: 0.2926 S12: -0.3739 S13: 1.0508 REMARK 3 S21: 0.1117 S22: -0.1950 S23: 0.2839 REMARK 3 S31: -0.3879 S32: -0.4269 S33: -0.0476 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 276:296) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2651 11.6160 -14.6477 REMARK 3 T TENSOR REMARK 3 T11: 0.3911 T22: 0.4312 REMARK 3 T33: 0.1991 T12: 0.0193 REMARK 3 T13: 0.1550 T23: 0.1110 REMARK 3 L TENSOR REMARK 3 L11: 1.8399 L22: 0.9339 REMARK 3 L33: 0.6278 L12: -0.5965 REMARK 3 L13: 0.1206 L23: 0.6139 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.8156 S13: 0.1341 REMARK 3 S21: -0.4676 S22: -0.0687 S23: -0.4828 REMARK 3 S31: -0.0122 S32: 0.3251 S33: -0.0293 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 48:117) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9410 22.7733 22.0216 REMARK 3 T TENSOR REMARK 3 T11: 0.1736 T22: 0.4078 REMARK 3 T33: 0.4407 T12: -0.1405 REMARK 3 T13: 0.1382 T23: -0.3234 REMARK 3 L TENSOR REMARK 3 L11: 2.0166 L22: 0.8252 REMARK 3 L33: 2.4418 L12: -0.1896 REMARK 3 L13: -1.5552 L23: -0.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.3950 S12: -0.7928 S13: 0.9264 REMARK 3 S21: 0.0752 S22: -0.0796 S23: 0.2466 REMARK 3 S31: -0.3139 S32: 0.4695 S33: -0.3313 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 118:146) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7825 9.0026 37.8183 REMARK 3 T TENSOR REMARK 3 T11: 0.3928 T22: 1.1123 REMARK 3 T33: 0.0467 T12: -0.1125 REMARK 3 T13: 0.0284 T23: -0.3045 REMARK 3 L TENSOR REMARK 3 L11: 2.0992 L22: 0.4762 REMARK 3 L33: 0.5124 L12: 0.5745 REMARK 3 L13: -0.7132 L23: -0.4862 REMARK 3 S TENSOR REMARK 3 S11: 0.5643 S12: -0.7645 S13: 0.0767 REMARK 3 S21: 0.5826 S22: -0.2054 S23: 0.1573 REMARK 3 S31: 0.0273 S32: 1.6548 S33: -0.2910 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 147:193) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2750 14.4552 16.5636 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.2626 REMARK 3 T33: 0.2062 T12: -0.0054 REMARK 3 T13: 0.0198 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 3.8521 L22: 0.5953 REMARK 3 L33: 1.0433 L12: 1.0369 REMARK 3 L13: -1.1628 L23: 0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.3100 S12: -0.7608 S13: 0.4681 REMARK 3 S21: -0.0074 S22: -0.0613 S23: 0.1108 REMARK 3 S31: 0.0138 S32: 0.3368 S33: -0.1941 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 194:275) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6586 -1.0259 36.3922 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 1.3207 REMARK 3 T33: 0.1023 T12: 0.0097 REMARK 3 T13: -0.0478 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 1.5800 L22: 1.6254 REMARK 3 L33: 0.4883 L12: 0.8261 REMARK 3 L13: -0.5274 L23: -0.7592 REMARK 3 S TENSOR REMARK 3 S11: 0.2449 S12: -0.8662 S13: -0.1004 REMARK 3 S21: 0.0942 S22: -0.6543 S23: -0.2959 REMARK 3 S31: 0.1509 S32: 1.1323 S33: 0.2088 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 276:296) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5556 -1.7374 46.5876 REMARK 3 T TENSOR REMARK 3 T11: 0.4472 T22: 0.9713 REMARK 3 T33: 0.2748 T12: 0.0517 REMARK 3 T13: 0.1104 T23: -0.2392 REMARK 3 L TENSOR REMARK 3 L11: 0.5808 L22: 0.0465 REMARK 3 L33: 3.1960 L12: -0.0394 REMARK 3 L13: -0.7246 L23: -0.2889 REMARK 3 S TENSOR REMARK 3 S11: -0.1467 S12: 0.6775 S13: -0.1469 REMARK 3 S21: 0.0594 S22: -0.0429 S23: 0.3879 REMARK 3 S31: -0.1799 S32: 0.9451 S33: 0.0639 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38912 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PGJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 12% PEG 4000, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 39 REMARK 465 ARG A 40 REMARK 465 GLU A 41 REMARK 465 ALA A 42 REMARK 465 GLU A 43 REMARK 465 ALA A 44 REMARK 465 ARG A 45 REMARK 465 TRP A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 246 REMARK 465 ARG A 247 REMARK 465 GLU A 248 REMARK 465 ASP A 249 REMARK 465 THR A 297 REMARK 465 SER A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 LYS B 39 REMARK 465 ARG B 40 REMARK 465 GLU B 41 REMARK 465 ALA B 42 REMARK 465 GLU B 43 REMARK 465 ALA B 44 REMARK 465 THR B 297 REMARK 465 SER B 298 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 128 43.22 -152.17 REMARK 500 GLN A 139 18.08 -152.76 REMARK 500 ASP A 179 -69.68 -103.39 REMARK 500 ASN A 182 47.32 -91.31 REMARK 500 ASP A 202 -124.51 59.29 REMARK 500 ASN A 270 41.47 77.35 REMARK 500 ASN A 290 71.25 -113.28 REMARK 500 GLU A 292 23.38 44.03 REMARK 500 SER A 294 -162.29 -113.22 REMARK 500 PRO B 118 104.72 -47.30 REMARK 500 ILE B 128 41.48 -147.52 REMARK 500 CYS B 180 140.80 -170.65 REMARK 500 ASN B 182 58.21 -94.63 REMARK 500 ASP B 202 -116.81 60.36 REMARK 500 VAL B 225 -58.08 -125.39 REMARK 500 GLU B 248 108.62 -43.27 REMARK 500 GLU B 292 40.97 37.82 REMARK 500 ASP B 293 -79.23 -118.61 REMARK 500 SER B 295 74.63 38.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8R A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8R B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U4I RELATED DB: PDB DBREF 3U4H A 45 300 UNP P28907 CD38_HUMAN 45 300 DBREF 3U4H B 45 300 UNP P28907 CD38_HUMAN 45 300 SEQADV 3U4H LYS A 39 UNP P28907 EXPRESSION TAG SEQADV 3U4H ARG A 40 UNP P28907 EXPRESSION TAG SEQADV 3U4H GLU A 41 UNP P28907 EXPRESSION TAG SEQADV 3U4H ALA A 42 UNP P28907 EXPRESSION TAG SEQADV 3U4H GLU A 43 UNP P28907 EXPRESSION TAG SEQADV 3U4H ALA A 44 UNP P28907 EXPRESSION TAG SEQADV 3U4H THR A 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 3U4H ASP A 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 3U4H ASP A 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 3U4H ASP A 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 3U4H ASP A 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 3U4H LYS B 39 UNP P28907 EXPRESSION TAG SEQADV 3U4H ARG B 40 UNP P28907 EXPRESSION TAG SEQADV 3U4H GLU B 41 UNP P28907 EXPRESSION TAG SEQADV 3U4H ALA B 42 UNP P28907 EXPRESSION TAG SEQADV 3U4H GLU B 43 UNP P28907 EXPRESSION TAG SEQADV 3U4H ALA B 44 UNP P28907 EXPRESSION TAG SEQADV 3U4H THR B 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 3U4H ASP B 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 3U4H ASP B 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 3U4H ASP B 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 3U4H ASP B 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQRES 1 A 262 LYS ARG GLU ALA GLU ALA ARG TRP ARG GLN THR TRP SER SEQRES 2 A 262 GLY PRO GLY THR THR LYS ARG PHE PRO GLU THR VAL LEU SEQRES 3 A 262 ALA ARG CYS VAL LYS TYR THR GLU ILE HIS PRO GLU MET SEQRES 4 A 262 ARG HIS VAL ASP CYS GLN SER VAL TRP ASP ALA PHE LYS SEQRES 5 A 262 GLY ALA PHE ILE SER LYS HIS PRO CYS ASP ILE THR GLU SEQRES 6 A 262 GLU ASP TYR GLN PRO LEU MET LYS LEU GLY THR GLN THR SEQRES 7 A 262 VAL PRO CYS ASN LYS ILE LEU LEU TRP SER ARG ILE LYS SEQRES 8 A 262 ASP LEU ALA HIS GLN PHE THR GLN VAL GLN ARG ASP MET SEQRES 9 A 262 PHE THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP SEQRES 10 A 262 ASP LEU THR TRP CYS GLY GLU PHE ASP THR SER LYS ILE SEQRES 11 A 262 ASN TYR GLN SER CYS PRO ASP TRP ARG LYS ASP CYS SER SEQRES 12 A 262 ASN ASN PRO VAL SER VAL PHE TRP LYS THR VAL SER ARG SEQRES 13 A 262 ARG PHE ALA GLU ALA ALA CYS ASP VAL VAL HIS VAL MET SEQRES 14 A 262 LEU ASP GLY SER ARG SER LYS ILE PHE ASP LYS ASP SER SEQRES 15 A 262 THR PHE GLY SER VAL GLU VAL HIS ASN LEU GLN PRO GLU SEQRES 16 A 262 LYS VAL GLN THR LEU GLU ALA TRP VAL ILE HIS GLY GLY SEQRES 17 A 262 ARG GLU ASP SER ARG ASP LEU CYS GLN ASP PRO THR ILE SEQRES 18 A 262 LYS GLU LEU GLU SER ILE ILE SER LYS ARG ASN ILE GLN SEQRES 19 A 262 PHE SER CYS LYS ASN ILE TYR ARG PRO ASP LYS PHE LEU SEQRES 20 A 262 GLN CYS VAL LYS ASN PRO GLU ASP SER SER CYS THR SER SEQRES 21 A 262 GLU ILE SEQRES 1 B 262 LYS ARG GLU ALA GLU ALA ARG TRP ARG GLN THR TRP SER SEQRES 2 B 262 GLY PRO GLY THR THR LYS ARG PHE PRO GLU THR VAL LEU SEQRES 3 B 262 ALA ARG CYS VAL LYS TYR THR GLU ILE HIS PRO GLU MET SEQRES 4 B 262 ARG HIS VAL ASP CYS GLN SER VAL TRP ASP ALA PHE LYS SEQRES 5 B 262 GLY ALA PHE ILE SER LYS HIS PRO CYS ASP ILE THR GLU SEQRES 6 B 262 GLU ASP TYR GLN PRO LEU MET LYS LEU GLY THR GLN THR SEQRES 7 B 262 VAL PRO CYS ASN LYS ILE LEU LEU TRP SER ARG ILE LYS SEQRES 8 B 262 ASP LEU ALA HIS GLN PHE THR GLN VAL GLN ARG ASP MET SEQRES 9 B 262 PHE THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP SEQRES 10 B 262 ASP LEU THR TRP CYS GLY GLU PHE ASP THR SER LYS ILE SEQRES 11 B 262 ASN TYR GLN SER CYS PRO ASP TRP ARG LYS ASP CYS SER SEQRES 12 B 262 ASN ASN PRO VAL SER VAL PHE TRP LYS THR VAL SER ARG SEQRES 13 B 262 ARG PHE ALA GLU ALA ALA CYS ASP VAL VAL HIS VAL MET SEQRES 14 B 262 LEU ASP GLY SER ARG SER LYS ILE PHE ASP LYS ASP SER SEQRES 15 B 262 THR PHE GLY SER VAL GLU VAL HIS ASN LEU GLN PRO GLU SEQRES 16 B 262 LYS VAL GLN THR LEU GLU ALA TRP VAL ILE HIS GLY GLY SEQRES 17 B 262 ARG GLU ASP SER ARG ASP LEU CYS GLN ASP PRO THR ILE SEQRES 18 B 262 LYS GLU LEU GLU SER ILE ILE SER LYS ARG ASN ILE GLN SEQRES 19 B 262 PHE SER CYS LYS ASN ILE TYR ARG PRO ASP LYS PHE LEU SEQRES 20 B 262 GLN CYS VAL LYS ASN PRO GLU ASP SER SER CYS THR SER SEQRES 21 B 262 GLU ILE HET C8R A 401 36 HET C8R B 401 36 HETNAM C8R 8-AMINO-N1-CYCLIC INOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 C8R 2(C15 H21 N5 O14 P2) FORMUL 5 HOH *251(H2 O) HELIX 1 1 ARG A 58 HIS A 74 1 17 HELIX 2 2 PRO A 75 ARG A 78 5 4 HELIX 3 3 ASP A 81 ALA A 92 1 12 HELIX 4 4 GLU A 103 ASP A 105 5 3 HELIX 5 5 TYR A 106 GLY A 113 1 8 HELIX 6 6 PRO A 118 LYS A 121 5 4 HELIX 7 7 ILE A 128 VAL A 138 1 11 HELIX 8 8 THR A 144 ASP A 147 5 4 HELIX 9 9 THR A 148 ASP A 155 1 8 HELIX 10 10 ASN A 183 ALA A 200 1 18 HELIX 11 11 SER A 220 VAL A 225 1 6 HELIX 12 12 ASP A 252 GLN A 255 5 4 HELIX 13 13 ASP A 256 LYS A 268 1 13 HELIX 14 14 ARG A 280 ASN A 290 1 11 HELIX 15 15 ARG B 58 HIS B 74 1 17 HELIX 16 16 PRO B 75 ARG B 78 5 4 HELIX 17 17 ASP B 81 ILE B 94 1 14 HELIX 18 18 THR B 102 ASP B 105 5 4 HELIX 19 19 TYR B 106 GLY B 113 1 8 HELIX 20 20 ILE B 128 GLN B 139 1 12 HELIX 21 21 THR B 144 ASP B 147 5 4 HELIX 22 22 THR B 148 ASP B 155 1 8 HELIX 23 23 ASN B 183 ALA B 200 1 18 HELIX 24 24 SER B 220 VAL B 225 1 6 HELIX 25 25 ASP B 252 GLN B 255 5 4 HELIX 26 26 ASP B 256 LYS B 268 1 13 HELIX 27 27 ARG B 280 ASN B 290 1 11 SHEET 1 A 2 GLY A 52 PRO A 53 0 SHEET 2 A 2 SER A 172 CYS A 173 -1 O CYS A 173 N GLY A 52 SHEET 1 B 4 LEU A 123 SER A 126 0 SHEET 2 B 4 ASP A 202 ASP A 209 1 O HIS A 205 N LEU A 124 SHEET 3 B 4 VAL A 235 ILE A 243 1 O ILE A 243 N LEU A 208 SHEET 4 B 4 GLN A 272 ILE A 278 1 O LYS A 276 N VAL A 242 SHEET 1 C 2 GLY A 161 GLU A 162 0 SHEET 2 C 2 THR A 165 ILE A 168 -1 O THR A 165 N GLU A 162 SHEET 1 D 2 GLY B 52 PRO B 53 0 SHEET 2 D 2 SER B 172 CYS B 173 -1 O CYS B 173 N GLY B 52 SHEET 1 E 4 LEU B 123 SER B 126 0 SHEET 2 E 4 ASP B 202 ASP B 209 1 O HIS B 205 N LEU B 124 SHEET 3 E 4 VAL B 235 ILE B 243 1 O TRP B 241 N VAL B 206 SHEET 4 E 4 GLN B 272 ILE B 278 1 O GLN B 272 N GLN B 236 SSBOND 1 CYS A 67 CYS A 82 1555 1555 2.07 SSBOND 2 CYS A 99 CYS A 180 1555 1555 2.06 SSBOND 3 CYS A 119 CYS A 201 1555 1555 2.06 SSBOND 4 CYS A 160 CYS A 173 1555 1555 2.07 SSBOND 5 CYS A 254 CYS A 275 1555 1555 2.06 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.02 SSBOND 7 CYS B 67 CYS B 82 1555 1555 2.04 SSBOND 8 CYS B 99 CYS B 180 1555 1555 2.04 SSBOND 9 CYS B 119 CYS B 201 1555 1555 2.03 SSBOND 10 CYS B 160 CYS B 173 1555 1555 2.08 SSBOND 11 CYS B 254 CYS B 275 1555 1555 2.04 SSBOND 12 CYS B 287 CYS B 296 1555 1555 2.03 SITE 1 AC1 22 LEU A 124 TRP A 125 SER A 126 ARG A 127 SITE 2 AC1 22 LEU A 145 GLU A 146 ASP A 155 TRP A 189 SITE 3 AC1 22 SER A 193 SER A 220 THR A 221 PHE A 222 SITE 4 AC1 22 GLU A 226 HOH A 503 HOH A 515 HOH A 519 SITE 5 AC1 22 HOH A 533 HOH A 535 HOH A 541 HOH A 557 SITE 6 AC1 22 HOH A 564 HOH A 603 SITE 1 AC2 18 LEU B 124 TRP B 125 SER B 126 ARG B 127 SITE 2 AC2 18 LEU B 145 GLU B 146 ASP B 155 TRP B 189 SITE 3 AC2 18 SER B 193 SER B 220 THR B 221 PHE B 222 SITE 4 AC2 18 GLU B 226 HOH B 516 HOH B 529 HOH B 533 SITE 5 AC2 18 HOH B 543 HOH B 553 CRYST1 41.713 51.459 67.755 72.85 89.13 83.18 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023973 -0.002867 0.000505 0.00000 SCALE2 0.000000 0.019571 -0.006047 0.00000 SCALE3 0.000000 0.000000 0.015449 0.00000