HEADER TRANSCRIPTION 11-OCT-11 3U5N TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF TRIM33 PHD-BROMO AND H3(1-20) TITLE 2 K9ME3K14AC HISTONE PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM33; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THE C-TERMINAL PHD AND BROMO DUAL DOMAINS OF TRIM33, UNP COMPND 5 RESIDUES 882-1087; COMPND 6 SYNONYM: ECTODERMIN HOMOLOG, RET-FUSED GENE 7 PROTEIN, PROTEIN RFG7, COMPND 7 TRANSCRIPTION INTERMEDIARY FACTOR 1-GAMMA, TIF1-GAMMA, TRIPARTITE COMPND 8 MOTIF-CONTAINING PROTEIN 33; COMPND 9 EC: 6.3.2.-; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: HISTONE H3.1; COMPND 13 CHAIN: C, D; COMPND 14 FRAGMENT: N-TERMINAL HISTONE H3 PEPTIDE CONTAINING TRIMETHYLATED K9 COMPND 15 AND ACETYLATED K14, UNP RESIDUES 2-21; COMPND 16 SYNONYM: HISTONE H3; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM33, KIAA1113, RFG7, TIF1G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS TRIM33, PHD, BROMODOMAIN, TGF-BETA, EPIGENETICS, HISTONE, KEYWDS 2 METHYLATION, K9ME3, K14AC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,D.J.PATEL REVDAT 3 06-DEC-23 3U5N 1 REMARK REVDAT 2 13-SEP-23 3U5N 1 REMARK SEQADV LINK REVDAT 1 18-JAN-12 3U5N 0 JRNL AUTH Q.XI,Z.WANG,A.I.ZAROMYTIDOU,X.H.ZHANG,L.F.CHOW-TSANG, JRNL AUTH 2 J.X.LIU,H.KIM,A.BARLAS,K.MANOVA-TODOROVA,V.KAARTINEN, JRNL AUTH 3 L.STUDER,W.MARK,D.J.PATEL,J.MASSAGUE JRNL TITL A POISED CHROMATIN PLATFORM FOR TGF-BETA ACCESS TO MASTER JRNL TITL 2 REGULATORS JRNL REF CELL(CAMBRIDGE,MASS.) V. 147 1511 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 22196728 JRNL DOI 10.1016/J.CELL.2011.11.032 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 32513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7952 - 4.4522 0.93 2628 132 0.1954 0.2573 REMARK 3 2 4.4522 - 3.5357 0.96 2576 148 0.1804 0.2091 REMARK 3 3 3.5357 - 3.0893 0.97 2591 130 0.1956 0.2532 REMARK 3 4 3.0893 - 2.8071 0.98 2574 163 0.2239 0.2787 REMARK 3 5 2.8071 - 2.6060 0.99 2632 107 0.2076 0.3119 REMARK 3 6 2.6060 - 2.4524 0.99 2582 131 0.2043 0.2637 REMARK 3 7 2.4524 - 2.3296 0.99 2585 148 0.2040 0.2569 REMARK 3 8 2.3296 - 2.2283 0.99 2565 158 0.1934 0.2307 REMARK 3 9 2.2283 - 2.1425 0.99 2597 136 0.2026 0.2220 REMARK 3 10 2.1425 - 2.0686 1.00 2579 140 0.2121 0.2907 REMARK 3 11 2.0686 - 2.0039 0.99 2591 126 0.2461 0.3466 REMARK 3 12 2.0039 - 1.9500 0.91 2362 132 0.2902 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 45.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.81890 REMARK 3 B22 (A**2) : 19.41680 REMARK 3 B33 (A**2) : -8.59790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3295 REMARK 3 ANGLE : 1.083 4446 REMARK 3 CHIRALITY : 0.082 484 REMARK 3 PLANARITY : 0.005 570 REMARK 3 DIHEDRAL : 18.521 1250 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 883:932) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6079 -10.5945 4.1595 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.2143 REMARK 3 T33: 0.1830 T12: 0.0487 REMARK 3 T13: -0.0026 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.0711 L22: 0.0887 REMARK 3 L33: 0.0349 L12: -0.0549 REMARK 3 L13: -0.0191 L23: 0.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.1327 S13: 0.1125 REMARK 3 S21: -0.0057 S22: -0.0222 S23: -0.1708 REMARK 3 S31: 0.0608 S32: 0.3252 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 933:975) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8088 -3.8908 -2.4676 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1967 REMARK 3 T33: 0.1667 T12: 0.0615 REMARK 3 T13: 0.0341 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.0318 L22: 0.0637 REMARK 3 L33: 0.0283 L12: 0.0142 REMARK 3 L13: 0.0144 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: 0.3411 S13: -0.0384 REMARK 3 S21: -0.1478 S22: -0.2030 S23: -0.2204 REMARK 3 S31: 0.1326 S32: 0.2393 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 976:1087) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2058 -14.4143 8.2142 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.1277 REMARK 3 T33: 0.1077 T12: 0.0056 REMARK 3 T13: 0.0014 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.2172 L22: 0.3998 REMARK 3 L33: 0.1856 L12: -0.0157 REMARK 3 L13: -0.0798 L23: 0.0879 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.0712 S13: -0.0348 REMARK 3 S21: 0.0013 S22: -0.0455 S23: -0.0008 REMARK 3 S31: -0.0186 S32: -0.1172 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'J' REMARK 3 ORIGIN FOR THE GROUP (A): 6.9984 -18.0518 8.1439 REMARK 3 T TENSOR REMARK 3 T11: 0.2419 T22: 0.6052 REMARK 3 T33: 0.3486 T12: 0.0725 REMARK 3 T13: -0.0012 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 0.0195 L22: 0.0100 REMARK 3 L33: 0.0131 L12: -0.0109 REMARK 3 L13: 0.0076 L23: 0.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.0247 S13: -0.1044 REMARK 3 S21: 0.0522 S22: 0.0257 S23: 0.0882 REMARK 3 S31: -0.0388 S32: 0.0240 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 883:912) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4786 -37.2241 -3.6895 REMARK 3 T TENSOR REMARK 3 T11: 0.2088 T22: 0.3085 REMARK 3 T33: 0.3347 T12: -0.0023 REMARK 3 T13: -0.0437 T23: 0.1118 REMARK 3 L TENSOR REMARK 3 L11: 0.0206 L22: 0.0269 REMARK 3 L33: 0.0234 L12: 0.0094 REMARK 3 L13: 0.0057 L23: 0.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.0717 S13: 0.0233 REMARK 3 S21: -0.0149 S22: -0.0177 S23: 0.1198 REMARK 3 S31: -0.2105 S32: -0.2227 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 913:975) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9934 -47.6926 2.5018 REMARK 3 T TENSOR REMARK 3 T11: 0.0922 T22: -0.4616 REMARK 3 T33: -0.2519 T12: -0.3581 REMARK 3 T13: 0.0992 T23: 0.8691 REMARK 3 L TENSOR REMARK 3 L11: 0.0235 L22: 0.0016 REMARK 3 L33: 0.0491 L12: -0.0290 REMARK 3 L13: -0.0638 L23: 0.0083 REMARK 3 S TENSOR REMARK 3 S11: 0.5395 S12: -0.3583 S13: -0.3699 REMARK 3 S21: -0.0793 S22: -0.0488 S23: 0.2221 REMARK 3 S31: 0.2987 S32: -0.3255 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 976:1009) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3601 -38.7879 -12.3099 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.2924 REMARK 3 T33: 0.2370 T12: -0.0192 REMARK 3 T13: 0.0140 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.0210 L22: 0.0190 REMARK 3 L33: 0.0432 L12: 0.0396 REMARK 3 L13: 0.0166 L23: -0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: 0.4844 S13: 0.0016 REMARK 3 S21: -0.0257 S22: 0.0752 S23: -0.0411 REMARK 3 S31: -0.1293 S32: 0.0376 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1010:1020) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1845 -54.5271 -3.3318 REMARK 3 T TENSOR REMARK 3 T11: 0.3918 T22: 0.1404 REMARK 3 T33: 0.6668 T12: -0.0010 REMARK 3 T13: -0.1144 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: -0.0052 L22: -0.0024 REMARK 3 L33: 0.0007 L12: -0.0037 REMARK 3 L13: 0.0032 L23: 0.0068 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0768 S13: -0.0522 REMARK 3 S21: -0.1740 S22: 0.0637 S23: 0.0344 REMARK 3 S31: 0.1816 S32: -0.0569 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1021:1048) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5119 -34.5480 -7.4648 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.1935 REMARK 3 T33: 0.2180 T12: 0.0022 REMARK 3 T13: -0.0030 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.0499 L22: 0.0050 REMARK 3 L33: 0.0241 L12: 0.0125 REMARK 3 L13: 0.0318 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: -0.1196 S13: 0.0127 REMARK 3 S21: 0.1500 S22: -0.0358 S23: -0.1358 REMARK 3 S31: -0.1808 S32: 0.0687 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1049:1087) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6038 -33.9745 2.6791 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.3245 REMARK 3 T33: 0.2417 T12: -0.0080 REMARK 3 T13: 0.0200 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 0.0802 L22: 0.0250 REMARK 3 L33: 0.0333 L12: -0.0251 REMARK 3 L13: -0.0007 L23: 0.0306 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: -0.2064 S13: 0.0438 REMARK 3 S21: 0.0910 S22: -0.1664 S23: -0.1373 REMARK 3 S31: -0.1271 S32: -0.0755 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' REMARK 3 ORIGIN FOR THE GROUP (A): -27.6394 -30.7281 -12.0473 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.3489 REMARK 3 T33: 0.2763 T12: -0.0671 REMARK 3 T13: -0.0091 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.0255 L22: -0.0238 REMARK 3 L33: -0.0209 L12: 0.0117 REMARK 3 L13: 0.0382 L23: -0.0740 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.1640 S13: -0.2488 REMARK 3 S21: -0.2577 S22: 0.0211 S23: 0.0840 REMARK 3 S31: -0.3677 S32: -0.0973 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 197 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28215 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32561 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49500 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3U5M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM TARTRATE AND 20% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.79300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.93050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.86850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.93050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.79300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.86850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 881 REMARK 465 ASP A 882 REMARK 465 ASN A 945 REMARK 465 LEU A 946 REMARK 465 GLN A 947 REMARK 465 HIS A 948 REMARK 465 SER A 949 REMARK 465 LYS A 950 REMARK 465 LYS A 951 REMARK 465 GLY A 952 REMARK 465 LYS A 953 REMARK 465 THR A 954 REMARK 465 VAL A 1047 REMARK 465 TYR A 1048 REMARK 465 ALA A 1049 REMARK 465 ASP A 1050 REMARK 465 THR A 1051 REMARK 465 GLN A 1052 REMARK 465 GLU A 1053 REMARK 465 ILE A 1054 REMARK 465 ASN A 1055 REMARK 465 LEU A 1056 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 ALY C 14 REMARK 465 ALA C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 LYS C 18 REMARK 465 GLN C 19 REMARK 465 LEU C 20 REMARK 465 SER B 881 REMARK 465 ASP B 882 REMARK 465 LEU B 946 REMARK 465 GLN B 947 REMARK 465 HIS B 948 REMARK 465 SER B 949 REMARK 465 LYS B 950 REMARK 465 LYS B 951 REMARK 465 GLY B 952 REMARK 465 LYS B 953 REMARK 465 THR B 954 REMARK 465 ALA B 955 REMARK 465 GLN B 956 REMARK 465 ASP B 1050 REMARK 465 THR B 1051 REMARK 465 GLN B 1052 REMARK 465 GLU B 1053 REMARK 465 ILE B 1054 REMARK 465 ASN B 1055 REMARK 465 LEU B 1056 REMARK 465 LYS B 1057 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 944 CG OD1 OD2 REMARK 470 ASN B 945 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 1002 O HOH B 174 1.96 REMARK 500 O HOH B 205 O HOH B 206 2.05 REMARK 500 O HOH A 195 O HOH A 198 2.08 REMARK 500 O LYS B 995 NZ LYS B 998 2.10 REMARK 500 O HOH B 176 O HOH B 201 2.12 REMARK 500 O HOH A 140 O HOH A 178 2.13 REMARK 500 OE1 GLN A 1016 N LEU D 20 2.14 REMARK 500 O HOH A 149 O HOH A 189 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 892 -63.51 -91.24 REMARK 500 ASN A 992 -4.17 74.01 REMARK 500 PRO B 885 45.47 -87.30 REMARK 500 VAL B 892 -63.40 -90.78 REMARK 500 LYS B 904 -60.27 -105.21 REMARK 500 CYS B 943 -59.74 -128.50 REMARK 500 ASN B 992 -4.45 74.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 890 SG REMARK 620 2 CYS A 893 SG 111.8 REMARK 620 3 HIS A 910 ND1 100.9 95.9 REMARK 620 4 CYS A 913 SG 109.3 119.9 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 902 SG REMARK 620 2 CYS A 905 SG 107.1 REMARK 620 3 CYS A 928 SG 115.1 113.0 REMARK 620 4 CYS A 931 SG 109.1 101.2 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 890 SG REMARK 620 2 CYS B 893 SG 108.0 REMARK 620 3 HIS B 910 ND1 106.8 93.6 REMARK 620 4 CYS B 913 SG 111.3 120.0 115.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 902 SG REMARK 620 2 CYS B 905 SG 109.2 REMARK 620 3 CYS B 928 SG 103.9 117.8 REMARK 620 4 CYS B 931 SG 104.4 105.6 115.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U5M RELATED DB: PDB REMARK 900 RELATED ID: 3U5O RELATED DB: PDB REMARK 900 RELATED ID: 3U5P RELATED DB: PDB DBREF 3U5N A 882 1087 UNP Q9UPN9 TRI33_HUMAN 882 1087 DBREF 3U5N C 1 20 UNP P68431 H31_HUMAN 2 21 DBREF 3U5N B 882 1087 UNP Q9UPN9 TRI33_HUMAN 882 1087 DBREF 3U5N D 1 20 UNP P68431 H31_HUMAN 2 21 SEQADV 3U5N SER A 881 UNP Q9UPN9 EXPRESSION TAG SEQADV 3U5N SER B 881 UNP Q9UPN9 EXPRESSION TAG SEQRES 1 A 207 SER ASP ASP ASP PRO ASN GLU ASP TRP CYS ALA VAL CYS SEQRES 2 A 207 GLN ASN GLY GLY ASP LEU LEU CYS CYS GLU LYS CYS PRO SEQRES 3 A 207 LYS VAL PHE HIS LEU THR CYS HIS VAL PRO THR LEU LEU SEQRES 4 A 207 SER PHE PRO SER GLY ASP TRP ILE CYS THR PHE CYS ARG SEQRES 5 A 207 ASP ILE GLY LYS PRO GLU VAL GLU TYR ASP CYS ASP ASN SEQRES 6 A 207 LEU GLN HIS SER LYS LYS GLY LYS THR ALA GLN GLY LEU SEQRES 7 A 207 SER PRO VAL ASP GLN ARG LYS CYS GLU ARG LEU LEU LEU SEQRES 8 A 207 TYR LEU TYR CYS HIS GLU LEU SER ILE GLU PHE GLN GLU SEQRES 9 A 207 PRO VAL PRO ALA SER ILE PRO ASN TYR TYR LYS ILE ILE SEQRES 10 A 207 LYS LYS PRO MET ASP LEU SER THR VAL LYS LYS LYS LEU SEQRES 11 A 207 GLN LYS LYS HIS SER GLN HIS TYR GLN ILE PRO ASP ASP SEQRES 12 A 207 PHE VAL ALA ASP VAL ARG LEU ILE PHE LYS ASN CYS GLU SEQRES 13 A 207 ARG PHE ASN GLU MET MET LYS VAL VAL GLN VAL TYR ALA SEQRES 14 A 207 ASP THR GLN GLU ILE ASN LEU LYS ALA ASP SER GLU VAL SEQRES 15 A 207 ALA GLN ALA GLY LYS ALA VAL ALA LEU TYR PHE GLU ASP SEQRES 16 A 207 LYS LEU THR GLU ILE TYR SER ASP ARG THR PHE ALA SEQRES 1 C 20 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 C 20 ALY ALA PRO ARG LYS GLN LEU SEQRES 1 B 207 SER ASP ASP ASP PRO ASN GLU ASP TRP CYS ALA VAL CYS SEQRES 2 B 207 GLN ASN GLY GLY ASP LEU LEU CYS CYS GLU LYS CYS PRO SEQRES 3 B 207 LYS VAL PHE HIS LEU THR CYS HIS VAL PRO THR LEU LEU SEQRES 4 B 207 SER PHE PRO SER GLY ASP TRP ILE CYS THR PHE CYS ARG SEQRES 5 B 207 ASP ILE GLY LYS PRO GLU VAL GLU TYR ASP CYS ASP ASN SEQRES 6 B 207 LEU GLN HIS SER LYS LYS GLY LYS THR ALA GLN GLY LEU SEQRES 7 B 207 SER PRO VAL ASP GLN ARG LYS CYS GLU ARG LEU LEU LEU SEQRES 8 B 207 TYR LEU TYR CYS HIS GLU LEU SER ILE GLU PHE GLN GLU SEQRES 9 B 207 PRO VAL PRO ALA SER ILE PRO ASN TYR TYR LYS ILE ILE SEQRES 10 B 207 LYS LYS PRO MET ASP LEU SER THR VAL LYS LYS LYS LEU SEQRES 11 B 207 GLN LYS LYS HIS SER GLN HIS TYR GLN ILE PRO ASP ASP SEQRES 12 B 207 PHE VAL ALA ASP VAL ARG LEU ILE PHE LYS ASN CYS GLU SEQRES 13 B 207 ARG PHE ASN GLU MET MET LYS VAL VAL GLN VAL TYR ALA SEQRES 14 B 207 ASP THR GLN GLU ILE ASN LEU LYS ALA ASP SER GLU VAL SEQRES 15 B 207 ALA GLN ALA GLY LYS ALA VAL ALA LEU TYR PHE GLU ASP SEQRES 16 B 207 LYS LEU THR GLU ILE TYR SER ASP ARG THR PHE ALA SEQRES 1 D 20 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 D 20 ALY ALA PRO ARG LYS GLN LEU MODRES 3U5N M3L C 9 LYS N-TRIMETHYLLYSINE MODRES 3U5N M3L D 9 LYS N-TRIMETHYLLYSINE MODRES 3U5N ALY D 14 LYS N(6)-ACETYLLYSINE HET M3L C 9 12 HET M3L D 9 12 HET ALY D 14 12 HET ZN A 1 1 HET ZN A 2 1 HET ZN B 1 1 HET ZN B 2 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION FORMUL 2 M3L 2(C9 H21 N2 O2 1+) FORMUL 4 ALY C8 H16 N2 O3 FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *212(H2 O) HELIX 1 1 SER A 959 CYS A 975 1 17 HELIX 2 2 SER A 979 GLN A 983 5 5 HELIX 3 3 ASN A 992 ILE A 997 1 6 HELIX 4 4 ASP A 1002 GLN A 1011 1 10 HELIX 5 5 ILE A 1020 GLN A 1046 1 27 HELIX 6 6 SER A 1060 TYR A 1081 1 22 HELIX 7 7 SER B 959 HIS B 976 1 18 HELIX 8 8 SER B 979 GLN B 983 5 5 HELIX 9 9 ASN B 992 ILE B 997 1 6 HELIX 10 10 ASP B 1002 LEU B 1010 1 9 HELIX 11 11 ILE B 1020 TYR B 1048 1 29 HELIX 12 12 SER B 1060 TYR B 1081 1 22 HELIX 13 13 THR D 11 ALA D 15 5 5 SHEET 1 A 3 VAL A 908 PHE A 909 0 SHEET 2 A 3 GLY A 897 CYS A 901 -1 N LEU A 900 O PHE A 909 SHEET 3 A 3 ARG C 2 THR C 6 -1 O LYS C 4 N LEU A 899 SHEET 1 B 3 VAL B 908 PHE B 909 0 SHEET 2 B 3 GLY B 897 CYS B 901 -1 N LEU B 900 O PHE B 909 SHEET 3 B 3 THR D 3 THR D 6 -1 O LYS D 4 N LEU B 899 LINK C ARG C 8 N M3L C 9 1555 1555 1.33 LINK C M3L C 9 N SER C 10 1555 1555 1.34 LINK C ARG D 8 N M3L D 9 1555 1555 1.33 LINK C M3L D 9 N SER D 10 1555 1555 1.33 LINK C GLY D 13 N ALY D 14 1555 1555 1.33 LINK C ALY D 14 N ALA D 15 1555 1555 1.33 LINK ZN ZN A 1 SG CYS A 890 1555 1555 2.32 LINK ZN ZN A 1 SG CYS A 893 1555 1555 2.33 LINK ZN ZN A 1 ND1 HIS A 910 1555 1555 2.26 LINK ZN ZN A 1 SG CYS A 913 1555 1555 2.29 LINK ZN ZN A 2 SG CYS A 902 1555 1555 2.36 LINK ZN ZN A 2 SG CYS A 905 1555 1555 2.41 LINK ZN ZN A 2 SG CYS A 928 1555 1555 2.40 LINK ZN ZN A 2 SG CYS A 931 1555 1555 2.46 LINK ZN ZN B 1 SG CYS B 890 1555 1555 2.37 LINK ZN ZN B 1 SG CYS B 893 1555 1555 2.52 LINK ZN ZN B 1 ND1 HIS B 910 1555 1555 2.21 LINK ZN ZN B 1 SG CYS B 913 1555 1555 2.25 LINK ZN ZN B 2 SG CYS B 902 1555 1555 2.48 LINK ZN ZN B 2 SG CYS B 905 1555 1555 2.37 LINK ZN ZN B 2 SG CYS B 928 1555 1555 2.48 LINK ZN ZN B 2 SG CYS B 931 1555 1555 2.38 CISPEP 1 VAL A 915 PRO A 916 0 -1.49 CISPEP 2 VAL B 915 PRO B 916 0 2.36 SITE 1 AC1 4 CYS A 890 CYS A 893 HIS A 910 CYS A 913 SITE 1 AC2 4 CYS A 902 CYS A 905 CYS A 928 CYS A 931 SITE 1 AC3 4 CYS B 890 CYS B 893 HIS B 910 CYS B 913 SITE 1 AC4 4 CYS B 902 CYS B 905 CYS B 928 CYS B 931 CRYST1 97.586 113.737 39.861 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025087 0.00000