data_3U66 # _entry.id 3U66 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U66 RCSB RCSB068355 WWPDB D_1000068355 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3U66 _pdbx_database_status.recvd_initial_deposition_date 2011-10-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Durand, E.' 1 'Aschtgen, M.S.' 2 'Zoued, A.' 3 'Spinelli, S.' 4 'Watson, P.J.H.' 5 'Cambillau, C.' 6 'Cascales, E.' 7 # _citation.id primary _citation.title ;Structural characterization and oligomerization of the TssL protein, a component shared by bacterial type VI and type IVb secretion systems. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 14157 _citation.page_last 14168 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22371492 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.338731 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Durand, E.' 1 primary 'Zoued, A.' 2 primary 'Spinelli, S.' 3 primary 'Watson, P.J.' 4 primary 'Aschtgen, M.S.' 5 primary 'Journet, L.' 6 primary 'Cambillau, C.' 7 primary 'Cascales, E.' 8 # _cell.entry_id 3U66 _cell.length_a 51.610 _cell.length_b 82.030 _cell.length_c 96.080 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U66 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative type VI secretion protein' 21068.330 1 ? ? 'Cytoplasmic domain, residues 1-183' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 31 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name SciP/TssL # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)NKPVISRAEQIFYPGWL(MSE)VSQLRSGQPVEDGKALYRRACQLVKQAREELAEAGFSQKSSDI(MSE)LYAFC ALLDESVLNREKTDDGWRTWQQDPLQAHFFGTLNAGEELWERIREQLKLPAPDVAVLTCLCRTLQLGFTGQYRSQDDERR EDVIRALTARVPAFTFAQDAPVVVRAPGYRAGRT(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;MNKPVISRAEQIFYPGWLMVSQLRSGQPVEDGKALYRRACQLVKQAREELAEAGFSQKSSDIMLYAFCALLDESVLNREK TDDGWRTWQQDPLQAHFFGTLNAGEELWERIREQLKLPAPDVAVLTCLCRTLQLGFTGQYRSQDDERREDVIRALTARVP AFTFAQDAPVVVRAPGYRAGRTM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ASN n 1 3 LYS n 1 4 PRO n 1 5 VAL n 1 6 ILE n 1 7 SER n 1 8 ARG n 1 9 ALA n 1 10 GLU n 1 11 GLN n 1 12 ILE n 1 13 PHE n 1 14 TYR n 1 15 PRO n 1 16 GLY n 1 17 TRP n 1 18 LEU n 1 19 MSE n 1 20 VAL n 1 21 SER n 1 22 GLN n 1 23 LEU n 1 24 ARG n 1 25 SER n 1 26 GLY n 1 27 GLN n 1 28 PRO n 1 29 VAL n 1 30 GLU n 1 31 ASP n 1 32 GLY n 1 33 LYS n 1 34 ALA n 1 35 LEU n 1 36 TYR n 1 37 ARG n 1 38 ARG n 1 39 ALA n 1 40 CYS n 1 41 GLN n 1 42 LEU n 1 43 VAL n 1 44 LYS n 1 45 GLN n 1 46 ALA n 1 47 ARG n 1 48 GLU n 1 49 GLU n 1 50 LEU n 1 51 ALA n 1 52 GLU n 1 53 ALA n 1 54 GLY n 1 55 PHE n 1 56 SER n 1 57 GLN n 1 58 LYS n 1 59 SER n 1 60 SER n 1 61 ASP n 1 62 ILE n 1 63 MSE n 1 64 LEU n 1 65 TYR n 1 66 ALA n 1 67 PHE n 1 68 CYS n 1 69 ALA n 1 70 LEU n 1 71 LEU n 1 72 ASP n 1 73 GLU n 1 74 SER n 1 75 VAL n 1 76 LEU n 1 77 ASN n 1 78 ARG n 1 79 GLU n 1 80 LYS n 1 81 THR n 1 82 ASP n 1 83 ASP n 1 84 GLY n 1 85 TRP n 1 86 ARG n 1 87 THR n 1 88 TRP n 1 89 GLN n 1 90 GLN n 1 91 ASP n 1 92 PRO n 1 93 LEU n 1 94 GLN n 1 95 ALA n 1 96 HIS n 1 97 PHE n 1 98 PHE n 1 99 GLY n 1 100 THR n 1 101 LEU n 1 102 ASN n 1 103 ALA n 1 104 GLY n 1 105 GLU n 1 106 GLU n 1 107 LEU n 1 108 TRP n 1 109 GLU n 1 110 ARG n 1 111 ILE n 1 112 ARG n 1 113 GLU n 1 114 GLN n 1 115 LEU n 1 116 LYS n 1 117 LEU n 1 118 PRO n 1 119 ALA n 1 120 PRO n 1 121 ASP n 1 122 VAL n 1 123 ALA n 1 124 VAL n 1 125 LEU n 1 126 THR n 1 127 CYS n 1 128 LEU n 1 129 CYS n 1 130 ARG n 1 131 THR n 1 132 LEU n 1 133 GLN n 1 134 LEU n 1 135 GLY n 1 136 PHE n 1 137 THR n 1 138 GLY n 1 139 GLN n 1 140 TYR n 1 141 ARG n 1 142 SER n 1 143 GLN n 1 144 ASP n 1 145 ASP n 1 146 GLU n 1 147 ARG n 1 148 ARG n 1 149 GLU n 1 150 ASP n 1 151 VAL n 1 152 ILE n 1 153 ARG n 1 154 ALA n 1 155 LEU n 1 156 THR n 1 157 ALA n 1 158 ARG n 1 159 VAL n 1 160 PRO n 1 161 ALA n 1 162 PHE n 1 163 THR n 1 164 PHE n 1 165 ALA n 1 166 GLN n 1 167 ASP n 1 168 ALA n 1 169 PRO n 1 170 VAL n 1 171 VAL n 1 172 VAL n 1 173 ARG n 1 174 ALA n 1 175 PRO n 1 176 GLY n 1 177 TYR n 1 178 ARG n 1 179 ALA n 1 180 GLY n 1 181 ARG n 1 182 THR n 1 183 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EC042_4527, SciP/TssL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'EAEC 042' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 216592 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 PLys' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pETG20AGW _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D3GU40_ECO44 _struct_ref.pdbx_db_accession D3GU40 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNKPVISRAEQIFYPGWLMVSQLRSGQPVEDGKALYRRACQLVKQAREELAEAGFSQKSSDIMLYAFCALLDESVLNREK TDDGWRTWQQDPLQAHFFGTLNAGEELWERIREQLKLPAPDVAVLTCLCRTLQLGFTGQYRSQDDERREDVIRALTARVP AFTFAQDAPVVVRAPGYRAGRTM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3U66 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D3GU40 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 183 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 183 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3U66 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 49.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.6 _exptl_crystal_grow.pdbx_details 'mixing 300 nL protein at 23mg/mL with 100 nL 4.3 M NaCl, 0.1 M Bicine pH 10.6. , VAPOR DIFFUSION, SITTING DROP, temperature 273K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 ? ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315r' 2011-08-26 ? 2 PIXEL 'PSI PILATUS 6M' 2011-09-21 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M mirrors 'SINGLE WAVELENGTH' x-ray 2 1 M mirrors 'SINGLE WAVELENGTH' x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 ? 0.9791 2 SYNCHROTRON 'SOLEIL BEAMLINE PROXIMA 1' SOLEIL 'PROXIMA 1' ? 0.9791 # _reflns.entry_id 3U66 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 45.0 _reflns.d_resolution_high 2.63 _reflns.number_obs 11601 _reflns.number_all 11601 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI 20.2 _reflns.B_iso_Wilson_estimate 70.17 _reflns.pdbx_redundancy 5.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 2.63 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.6 _reflns_shell.pdbx_Rsym_value 0.6 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 853 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 3U66 _refine.ls_number_reflns_obs 6278 _refine.ls_number_reflns_all 6278 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.68 _refine.ls_d_res_high 2.63 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2375 _refine.ls_R_factor_all 0.2375 _refine.ls_R_factor_R_work 0.2353 _refine.ls_R_factor_R_free 0.2573 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.62 _refine.ls_number_reflns_R_free 604 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.8990 _refine.correlation_coeff_Fo_to_Fc_free 0.8874 _refine.B_iso_mean 69.84 _refine.aniso_B[1][1] 12.7739 _refine.aniso_B[2][2] 8.7743 _refine.aniso_B[3][3] -21.5482 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3U66 _refine_analyze.Luzzati_coordinate_error_obs 0.414 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1288 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 1325 _refine_hist.d_res_high 2.63 _refine_hist.d_res_low 43.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.009 ? 2.00 1321 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.07 ? 2.00 1795 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d 22.04 ? 2.00 439 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 0 ? 2.00 27 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 0 ? 5.00 197 HARMONIC 'X-RAY DIFFRACTION' t_it 0 ? 20.00 1321 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion 2.36 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 22.04 ? ? ? ? 'X-RAY DIFFRACTION' n_angle_d 0 ? 5.00 171 SEMIHARMONIC 'X-RAY DIFFRACTION' n_bond_d 0 ? 4.00 1534 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.63 _refine_ls_shell.d_res_low 2.94 _refine_ls_shell.number_reflns_R_work 1576 _refine_ls_shell.R_factor_R_work 0.2652 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3230 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 9.58 _refine_ls_shell.number_reflns_R_free 167 _refine_ls_shell.number_reflns_all 1743 _refine_ls_shell.R_factor_all 0.2706 _refine_ls_shell.number_reflns_obs 853 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3U66 _struct.title 'Crystal structure of T6SS SciP/TssL from Escherichia Coli Enteroaggregative 042' _struct.pdbx_descriptor 'Putative type VI secretion protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U66 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'Duble helical bundle, Protein secretion, attached to inner membrane, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 6 ? SER A 25 ? ILE A 6 SER A 25 1 ? 20 HELX_P HELX_P2 2 ASP A 31 ? ALA A 53 ? ASP A 31 ALA A 53 1 ? 23 HELX_P HELX_P3 3 SER A 56 ? ASN A 77 ? SER A 56 ASN A 77 1 ? 22 HELX_P HELX_P4 4 ARG A 86 ? ASP A 91 ? ARG A 86 ASP A 91 1 ? 6 HELX_P HELX_P5 5 PRO A 92 ? GLY A 99 ? PRO A 92 GLY A 99 1 ? 8 HELX_P HELX_P6 6 ASN A 102 ? LYS A 116 ? ASN A 102 LYS A 116 1 ? 15 HELX_P HELX_P7 7 ASP A 121 ? LEU A 134 ? ASP A 121 LEU A 134 1 ? 14 HELX_P HELX_P8 8 ARG A 147 ? ARG A 158 ? ARG A 147 ARG A 158 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 18 C ? ? ? 1_555 A MSE 19 N ? ? A LEU 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.357 ? covale2 covale ? ? A MSE 19 C ? ? ? 1_555 A VAL 20 N ? ? A MSE 19 A VAL 20 1_555 ? ? ? ? ? ? ? 1.357 ? covale3 covale ? ? A ILE 62 C ? ? ? 1_555 A MSE 63 N ? ? A ILE 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.343 ? covale4 covale ? ? A MSE 63 C ? ? ? 1_555 A LEU 64 N ? ? A MSE 63 A LEU 64 1_555 ? ? ? ? ? ? ? 1.352 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 30 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 30 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 31 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 31 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.34 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 184' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 47 ? ARG A 47 . ? 1_555 ? 2 AC1 4 GLN A 57 ? GLN A 57 . ? 1_555 ? 3 AC1 4 LYS A 116 ? LYS A 116 . ? 8_555 ? 4 AC1 4 HOH C . ? HOH A 187 . ? 1_555 ? # _database_PDB_matrix.entry_id 3U66 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3U66 _atom_sites.fract_transf_matrix[1][1] 0.019376 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012191 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010408 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 PRO 4 4 ? ? ? A . n A 1 5 VAL 5 5 ? ? ? A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 MSE 19 19 19 MSE MSE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 MSE 63 63 63 MSE MSE A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 LYS 80 80 ? ? ? A . n A 1 81 THR 81 81 ? ? ? A . n A 1 82 ASP 82 82 ? ? ? A . n A 1 83 ASP 83 83 ? ? ? A . n A 1 84 GLY 84 84 ? ? ? A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 TRP 88 88 88 TRP TRP A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 CYS 129 129 129 CYS CYS A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLN 143 143 143 GLN GLN A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 ARG 158 158 158 ARG ARG A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 PHE 162 162 162 PHE PHE A . n A 1 163 THR 163 163 163 THR THR A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 GLN 166 166 166 GLN GLN A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 ALA 179 179 ? ? ? A . n A 1 180 GLY 180 180 ? ? ? A . n A 1 181 ARG 181 181 ? ? ? A . n A 1 182 THR 182 182 ? ? ? A . n A 1 183 MSE 183 183 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 184 1 GOL GOL A . C 3 HOH 1 185 1 HOH HOH A . C 3 HOH 2 186 2 HOH HOH A . C 3 HOH 3 187 3 HOH HOH A . C 3 HOH 4 188 4 HOH HOH A . C 3 HOH 5 189 5 HOH HOH A . C 3 HOH 6 190 6 HOH HOH A . C 3 HOH 7 191 7 HOH HOH A . C 3 HOH 8 192 8 HOH HOH A . C 3 HOH 9 193 9 HOH HOH A . C 3 HOH 10 194 10 HOH HOH A . C 3 HOH 11 195 11 HOH HOH A . C 3 HOH 12 196 12 HOH HOH A . C 3 HOH 13 197 13 HOH HOH A . C 3 HOH 14 198 14 HOH HOH A . C 3 HOH 15 199 15 HOH HOH A . C 3 HOH 16 200 16 HOH HOH A . C 3 HOH 17 201 17 HOH HOH A . C 3 HOH 18 202 18 HOH HOH A . C 3 HOH 19 203 19 HOH HOH A . C 3 HOH 20 204 20 HOH HOH A . C 3 HOH 21 205 21 HOH HOH A . C 3 HOH 22 206 22 HOH HOH A . C 3 HOH 23 207 23 HOH HOH A . C 3 HOH 24 208 24 HOH HOH A . C 3 HOH 25 209 25 HOH HOH A . C 3 HOH 26 210 26 HOH HOH A . C 3 HOH 27 211 27 HOH HOH A . C 3 HOH 28 212 28 HOH HOH A . C 3 HOH 29 213 29 HOH HOH A . C 3 HOH 30 214 30 HOH HOH A . C 3 HOH 31 215 31 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 19 A MSE 19 ? MET SELENOMETHIONINE 2 A MSE 63 A MSE 63 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C 3 1,3,4,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3010 ? 2 MORE -15 ? 2 'SSA (A^2)' 17480 ? 3 'ABSA (A^2)' 11400 ? 3 MORE -65 ? 3 'SSA (A^2)' 29570 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 96.0800000000 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 51.6100000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 51.6100000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 96.0800000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-07 2 'Structure model' 1 1 2013-01-09 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 26.6001 4.7288 30.1720 0.0012 -0.0035 -0.0002 0.0035 0.0003 0.0005 0.0428 0.0878 0.0496 -0.0880 -0.0799 -0.0250 0.0003 -0.0015 -0.0002 0.0000 -0.0013 -0.0014 -0.0013 0.0024 0.0010 'X-RAY DIFFRACTION' 2 ? refined 28.1206 13.9496 23.0117 0.0042 0.0043 0.0027 -0.0045 0.0028 0.0050 0.0408 0.0734 0.2416 0.0162 -0.1831 -0.2201 0.0009 -0.0015 0.0008 0.0019 -0.0024 -0.0040 -0.0062 0.0058 0.0015 'X-RAY DIFFRACTION' 3 ? refined 22.0900 14.2773 32.7485 0.0007 -0.0005 0.0024 -0.0027 0.0017 -0.0014 0.2033 0.1434 0.1463 0.0037 -0.3157 0.1581 0.0002 0.0040 0.0014 -0.0012 -0.0005 0.0028 -0.0015 -0.0041 0.0003 'X-RAY DIFFRACTION' 4 ? refined 26.8034 21.5142 35.1746 -0.0014 -0.0030 -0.0009 -0.0076 0.0002 0.0007 0.0000 0.0034 0.0000 0.0829 -0.0187 0.0342 -0.0003 -0.0014 0.0002 0.0024 0.0000 -0.0003 0.0006 0.0022 0.0002 'X-RAY DIFFRACTION' 5 ? refined 7.3163 15.8176 30.0354 -0.0037 -0.0018 -0.0020 0.0034 0.0024 -0.0011 0.0000 0.0000 0.0000 -0.0610 0.0461 0.0129 0.0000 -0.0008 0.0006 -0.0009 0.0000 0.0022 0.0000 0.0001 0.0000 'X-RAY DIFFRACTION' 6 ? refined 14.9461 7.1683 31.4774 -0.0030 -0.0021 -0.0037 -0.0035 0.0006 -0.0003 0.0000 0.0000 0.0000 0.0169 0.0031 -0.0184 -0.0001 -0.0012 -0.0009 0.0002 0.0000 0.0004 -0.0003 0.0002 0.0001 'X-RAY DIFFRACTION' 7 ? refined 6.5188 18.8272 42.7398 0.0005 0.0015 0.0016 -0.0004 0.0011 -0.0005 0.0009 0.0125 0.0088 -0.0108 -0.0011 0.0024 0.0000 -0.0001 0.0003 -0.0002 -0.0001 0.0011 0.0000 -0.0006 0.0001 'X-RAY DIFFRACTION' 8 ? refined 5.5216 5.7400 34.5899 -0.0043 -0.0033 -0.0001 -0.0070 0.0018 0.0005 0.0000 0.0000 0.0000 0.0417 -0.0415 0.0059 -0.0001 -0.0009 -0.0004 0.0005 0.0005 0.0014 0.0000 -0.0012 -0.0004 'X-RAY DIFFRACTION' 9 ? refined 9.5908 -1.6052 49.5172 0.0014 0.0027 0.0000 -0.0016 -0.0013 0.0003 0.0523 0.0377 0.0070 0.0108 -0.0284 0.0081 -0.0001 -0.0005 0.0003 0.0014 0.0003 -0.0003 0.0003 0.0000 -0.0002 'X-RAY DIFFRACTION' 10 ? refined 12.2383 6.6004 67.5071 0.0029 0.0017 0.0024 0.0001 -0.0001 -0.0007 0.0076 0.0084 0.0057 -0.0043 -0.0035 -0.0022 0.0001 -0.0002 0.0002 0.0002 0.0000 0.0000 -0.0005 0.0000 0.0000 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 6 A 32 '{A|6 - A|32}' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 33 A 57 '{A|33 - A|57}' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 58 A 79 '{A|58 - A|79}' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 85 A 104 '{A|85 - A|104}' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 105 A 121 '{A|105 - A|121}' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 122 A 137 '{A|122 - A|137}' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 138 A 145 '{A|138 - A|145}' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 146 A 163 '{A|146 - A|163}' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 164 A 172 '{A|164 - A|172}' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 173 A 178 '{A|173 - A|178}' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHELXD phasing . ? 2 PHASER phasing . ? 3 BUSTER refinement 2.9.2 ? 4 XDS 'data reduction' . ? 5 XSCALE 'data scaling' . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 30 ? ? -28.25 119.28 2 1 ARG A 86 ? ? 48.28 17.33 3 1 SER A 142 ? ? -165.78 101.99 4 1 ASP A 145 ? ? -69.33 2.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 24 ? CG ? A ARG 24 CG 2 1 Y 1 A ARG 24 ? CD ? A ARG 24 CD 3 1 Y 1 A ARG 24 ? NE ? A ARG 24 NE 4 1 Y 1 A ARG 24 ? CZ ? A ARG 24 CZ 5 1 Y 1 A ARG 24 ? NH1 ? A ARG 24 NH1 6 1 Y 1 A ARG 24 ? NH2 ? A ARG 24 NH2 7 1 Y 1 A GLN 27 ? CG ? A GLN 27 CG 8 1 Y 1 A GLN 27 ? CD ? A GLN 27 CD 9 1 Y 1 A GLN 27 ? OE1 ? A GLN 27 OE1 10 1 Y 1 A GLN 27 ? NE2 ? A GLN 27 NE2 11 1 Y 1 A GLU 30 ? CG ? A GLU 30 CG 12 1 Y 1 A GLU 30 ? CD ? A GLU 30 CD 13 1 Y 1 A GLU 30 ? OE1 ? A GLU 30 OE1 14 1 Y 1 A GLU 30 ? OE2 ? A GLU 30 OE2 15 1 Y 1 A ASP 31 ? CG ? A ASP 31 CG 16 1 Y 1 A ASP 31 ? OD1 ? A ASP 31 OD1 17 1 Y 1 A ASP 31 ? OD2 ? A ASP 31 OD2 18 1 Y 1 A LYS 33 ? CG ? A LYS 33 CG 19 1 Y 1 A LYS 33 ? CD ? A LYS 33 CD 20 1 Y 1 A LYS 33 ? CE ? A LYS 33 CE 21 1 Y 1 A LYS 33 ? NZ ? A LYS 33 NZ 22 1 Y 1 A GLU 48 ? CG ? A GLU 48 CG 23 1 Y 1 A GLU 48 ? CD ? A GLU 48 CD 24 1 Y 1 A GLU 48 ? OE1 ? A GLU 48 OE1 25 1 Y 1 A GLU 48 ? OE2 ? A GLU 48 OE2 26 1 Y 1 A GLU 52 ? CD ? A GLU 52 CD 27 1 Y 1 A GLU 52 ? OE1 ? A GLU 52 OE1 28 1 Y 1 A GLU 52 ? OE2 ? A GLU 52 OE2 29 1 Y 1 A GLU 79 ? CG ? A GLU 79 CG 30 1 Y 1 A GLU 79 ? CD ? A GLU 79 CD 31 1 Y 1 A GLU 79 ? OE1 ? A GLU 79 OE1 32 1 Y 1 A GLU 79 ? OE2 ? A GLU 79 OE2 33 1 Y 1 A ARG 86 ? CG ? A ARG 86 CG 34 1 Y 1 A ARG 86 ? CD ? A ARG 86 CD 35 1 Y 1 A ARG 86 ? NE ? A ARG 86 NE 36 1 Y 1 A ARG 86 ? CZ ? A ARG 86 CZ 37 1 Y 1 A ARG 86 ? NH1 ? A ARG 86 NH1 38 1 Y 1 A ARG 86 ? NH2 ? A ARG 86 NH2 39 1 Y 1 A GLN 89 ? CG ? A GLN 89 CG 40 1 Y 1 A GLN 89 ? CD ? A GLN 89 CD 41 1 Y 1 A GLN 89 ? OE1 ? A GLN 89 OE1 42 1 Y 1 A GLN 89 ? NE2 ? A GLN 89 NE2 43 1 Y 1 A GLN 90 ? CG ? A GLN 90 CG 44 1 Y 1 A GLN 90 ? CD ? A GLN 90 CD 45 1 Y 1 A GLN 90 ? OE1 ? A GLN 90 OE1 46 1 Y 1 A GLN 90 ? NE2 ? A GLN 90 NE2 47 1 Y 1 A GLU 106 ? CD ? A GLU 106 CD 48 1 Y 1 A GLU 106 ? OE1 ? A GLU 106 OE1 49 1 Y 1 A GLU 106 ? OE2 ? A GLU 106 OE2 50 1 Y 1 A ASP 145 ? CG ? A ASP 145 CG 51 1 Y 1 A ASP 145 ? OD1 ? A ASP 145 OD1 52 1 Y 1 A ASP 145 ? OD2 ? A ASP 145 OD2 53 1 Y 1 A ARG 147 ? CG ? A ARG 147 CG 54 1 Y 1 A ARG 147 ? CD ? A ARG 147 CD 55 1 Y 1 A ARG 147 ? NE ? A ARG 147 NE 56 1 Y 1 A ARG 147 ? CZ ? A ARG 147 CZ 57 1 Y 1 A ARG 147 ? NH1 ? A ARG 147 NH1 58 1 Y 1 A ARG 147 ? NH2 ? A ARG 147 NH2 59 1 Y 1 A GLU 149 ? CG ? A GLU 149 CG 60 1 Y 1 A GLU 149 ? CD ? A GLU 149 CD 61 1 Y 1 A GLU 149 ? OE1 ? A GLU 149 OE1 62 1 Y 1 A GLU 149 ? OE2 ? A GLU 149 OE2 63 1 Y 1 A ARG 178 ? CG ? A ARG 178 CG 64 1 Y 1 A ARG 178 ? CD ? A ARG 178 CD 65 1 Y 1 A ARG 178 ? NE ? A ARG 178 NE 66 1 Y 1 A ARG 178 ? CZ ? A ARG 178 CZ 67 1 Y 1 A ARG 178 ? NH1 ? A ARG 178 NH1 68 1 Y 1 A ARG 178 ? NH2 ? A ARG 178 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A PRO 4 ? A PRO 4 5 1 Y 1 A VAL 5 ? A VAL 5 6 1 Y 1 A LYS 80 ? A LYS 80 7 1 Y 1 A THR 81 ? A THR 81 8 1 Y 1 A ASP 82 ? A ASP 82 9 1 Y 1 A ASP 83 ? A ASP 83 10 1 Y 1 A GLY 84 ? A GLY 84 11 1 Y 1 A ALA 179 ? A ALA 179 12 1 Y 1 A GLY 180 ? A GLY 180 13 1 Y 1 A ARG 181 ? A ARG 181 14 1 Y 1 A THR 182 ? A THR 182 15 1 Y 1 A MSE 183 ? A MSE 183 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #