data_3U6D # _entry.id 3U6D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U6D NDB NA1332 RCSB RCSB068362 WWPDB D_1000068362 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3U6C . unspecified PDB 3U6E . unspecified PDB 3U6L . unspecified PDB 3U6M . unspecified PDB 3U6O . unspecified PDB 3U6P . unspecified PDB 3U6Q . unspecified PDB 3U6S . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3U6D _pdbx_database_status.recvd_initial_deposition_date 2011-10-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sung, R.J.' 1 'Zhang, M.' 2 'Qi, Y.' 3 'Verdine, G.L.' 4 # _citation.id primary _citation.title 'Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 18044 _citation.page_last 18054 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22465958 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.313635 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sung, R.J.' 1 primary 'Zhang, M.' 2 primary 'Qi, Y.' 3 primary 'Verdine, G.L.' 4 # _cell.entry_id 3U6D _cell.length_a 45.188 _cell.length_b 93.541 _cell.length_c 104.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U6D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Formamidopyrimidine-DNA glycosylase' 30580.330 1 3.2.2.23 'E3Q, Q166C,V222P' ? ? 2 polymer syn ;DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*TP*CP*CP*CP*GP*AP*CP*GP*C)-3') ; 4908.193 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*CP*GP*TP*CP*GP*(8OG)P*GP*AP*(TX)P*CP*TP*AP*CP*C)-3') ; 4965.299 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 260 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR ; ;PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR ; A ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DT)(DA)(DG)(DA)(DT)(DC)(DC)(DC)(DG)(DA)(DC)(DG)(DC)' AGGTAGATCCCGACGC B ? 3 polydeoxyribonucleotide no yes '(DT)(DG)(DC)(DG)(DT)(DC)(DG)(8OG)(DG)(DA)(08Q)(DC)(DT)(DA)(DC)(DC)' TGCGTCGGGAXCTACC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 LEU n 1 4 PRO n 1 5 GLU n 1 6 VAL n 1 7 GLU n 1 8 THR n 1 9 ILE n 1 10 ARG n 1 11 ARG n 1 12 THR n 1 13 LEU n 1 14 LEU n 1 15 PRO n 1 16 LEU n 1 17 ILE n 1 18 VAL n 1 19 GLY n 1 20 LYS n 1 21 THR n 1 22 ILE n 1 23 GLU n 1 24 ASP n 1 25 VAL n 1 26 ARG n 1 27 ILE n 1 28 PHE n 1 29 TRP n 1 30 PRO n 1 31 ASN n 1 32 ILE n 1 33 ILE n 1 34 ARG n 1 35 HIS n 1 36 PRO n 1 37 ARG n 1 38 ASP n 1 39 SER n 1 40 GLU n 1 41 ALA n 1 42 PHE n 1 43 ALA n 1 44 ALA n 1 45 ARG n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLN n 1 50 THR n 1 51 VAL n 1 52 ARG n 1 53 GLY n 1 54 LEU n 1 55 GLU n 1 56 ARG n 1 57 ARG n 1 58 GLY n 1 59 LYS n 1 60 PHE n 1 61 LEU n 1 62 LYS n 1 63 PHE n 1 64 LEU n 1 65 LEU n 1 66 ASP n 1 67 ARG n 1 68 ASP n 1 69 ALA n 1 70 LEU n 1 71 ILE n 1 72 SER n 1 73 HIS n 1 74 LEU n 1 75 ARG n 1 76 MET n 1 77 GLU n 1 78 GLY n 1 79 ARG n 1 80 TYR n 1 81 ALA n 1 82 VAL n 1 83 ALA n 1 84 SER n 1 85 ALA n 1 86 LEU n 1 87 GLU n 1 88 PRO n 1 89 LEU n 1 90 GLU n 1 91 PRO n 1 92 HIS n 1 93 THR n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 PHE n 1 98 CYS n 1 99 PHE n 1 100 THR n 1 101 ASP n 1 102 GLY n 1 103 SER n 1 104 GLU n 1 105 LEU n 1 106 ARG n 1 107 TYR n 1 108 ARG n 1 109 ASP n 1 110 VAL n 1 111 ARG n 1 112 LYS n 1 113 PHE n 1 114 GLY n 1 115 THR n 1 116 MET n 1 117 HIS n 1 118 VAL n 1 119 TYR n 1 120 ALA n 1 121 LYS n 1 122 GLU n 1 123 GLU n 1 124 ALA n 1 125 ASP n 1 126 ARG n 1 127 ARG n 1 128 PRO n 1 129 PRO n 1 130 LEU n 1 131 ALA n 1 132 GLU n 1 133 LEU n 1 134 GLY n 1 135 PRO n 1 136 GLU n 1 137 PRO n 1 138 LEU n 1 139 SER n 1 140 PRO n 1 141 ALA n 1 142 PHE n 1 143 SER n 1 144 PRO n 1 145 ALA n 1 146 VAL n 1 147 LEU n 1 148 ALA n 1 149 GLU n 1 150 ARG n 1 151 ALA n 1 152 VAL n 1 153 LYS n 1 154 THR n 1 155 LYS n 1 156 ARG n 1 157 SER n 1 158 VAL n 1 159 LYS n 1 160 ALA n 1 161 LEU n 1 162 LEU n 1 163 LEU n 1 164 ASP n 1 165 CYS n 1 166 THR n 1 167 VAL n 1 168 VAL n 1 169 ALA n 1 170 GLY n 1 171 PHE n 1 172 GLY n 1 173 ASN n 1 174 ILE n 1 175 TYR n 1 176 VAL n 1 177 ASP n 1 178 GLU n 1 179 SER n 1 180 LEU n 1 181 PHE n 1 182 ARG n 1 183 ALA n 1 184 GLY n 1 185 ILE n 1 186 LEU n 1 187 PRO n 1 188 GLY n 1 189 ARG n 1 190 PRO n 1 191 ALA n 1 192 ALA n 1 193 SER n 1 194 LEU n 1 195 SER n 1 196 SER n 1 197 LYS n 1 198 GLU n 1 199 ILE n 1 200 GLU n 1 201 ARG n 1 202 LEU n 1 203 HIS n 1 204 GLU n 1 205 GLU n 1 206 MET n 1 207 VAL n 1 208 ALA n 1 209 THR n 1 210 ILE n 1 211 GLY n 1 212 GLU n 1 213 ALA n 1 214 VAL n 1 215 MET n 1 216 LYS n 1 217 GLY n 1 218 GLY n 1 219 SER n 1 220 THR n 1 221 PRO n 1 222 ARG n 1 223 THR n 1 224 TYR n 1 225 VAL n 1 226 ASN n 1 227 THR n 1 228 GLN n 1 229 GLY n 1 230 GLU n 1 231 ALA n 1 232 GLY n 1 233 THR n 1 234 PHE n 1 235 GLN n 1 236 HIS n 1 237 HIS n 1 238 LEU n 1 239 TYR n 1 240 VAL n 1 241 TYR n 1 242 GLY n 1 243 ARG n 1 244 GLN n 1 245 GLY n 1 246 ASN n 1 247 PRO n 1 248 CYS n 1 249 LYS n 1 250 ARG n 1 251 CYS n 1 252 GLY n 1 253 THR n 1 254 PRO n 1 255 ILE n 1 256 GLU n 1 257 LYS n 1 258 THR n 1 259 VAL n 1 260 VAL n 1 261 ALA n 1 262 GLY n 1 263 ARG n 1 264 GLY n 1 265 THR n 1 266 HIS n 1 267 TYR n 1 268 CYS n 1 269 PRO n 1 270 ARG n 1 271 CYS n 1 272 GLN n 1 273 ARG n 2 1 DA n 2 2 DG n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DA n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DC n 2 12 DG n 2 13 DA n 2 14 DC n 2 15 DG n 2 16 DC n 3 1 DT n 3 2 DG n 3 3 DC n 3 4 DG n 3 5 DT n 3 6 DC n 3 7 DG n 3 8 8OG n 3 9 DG n 3 10 DA n 3 11 08Q n 3 12 DC n 3 13 DT n 3 14 DA n 3 15 DC n 3 16 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'synthetic DNA' 3 1 sample ? ? ? ? ? 'synthetic DNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP P84131_GEOSE P84131 1 ;PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR ; 2 ? 2 PDB 3U6D 3U6D 2 ? ? ? 3 PDB 3U6D 3U6D 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U6D A 1 ? 273 ? P84131 2 ? 274 ? 2 274 2 2 3U6D B 1 ? 16 ? 3U6D 1 ? 16 ? 1 16 3 3 3U6D C 1 ? 16 ? 3U6D 1 ? 16 ? 1 16 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3U6D _struct_ref_seq_dif.mon_id CYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 165 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P84131 _struct_ref_seq_dif.db_mon_id GLN _struct_ref_seq_dif.pdbx_seq_db_seq_num 166 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 166 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 08Q non-polymer . "5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}thymidine" ? 'C12 H20 N3 O7 P S' 381.342 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3U6D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 8K, sodium cacodylate, glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3U6D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.685 _reflns.d_resolution_high 1.85 _reflns.number_obs 38874 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U6D _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 36002 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.13 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.685 _refine.ls_d_res_high 1.870 _refine.ls_percent_reflns_obs 96.09 _refine.ls_R_factor_obs 0.1879 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1864 _refine.ls_R_factor_R_free 0.2163 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.06 _refine.ls_number_reflns_R_free 1821 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 2.1102 _refine.aniso_B[2][2] 0.2876 _refine.aniso_B[3][3] -2.3977 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.369 _refine.solvent_model_param_bsol 47.922 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.23 _refine.pdbx_overall_phase_error 19.42 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1990 _refine_hist.pdbx_number_atoms_nucleic_acid 473 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 260 _refine_hist.number_atoms_total 2724 _refine_hist.d_res_high 1.870 _refine_hist.d_res_low 32.685 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2614 'X-RAY DIFFRACTION' ? f_angle_d 1.283 ? ? 3634 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.382 ? ? 1042 'X-RAY DIFFRACTION' ? f_chiral_restr 0.215 ? ? 400 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 392 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.8700 1.9206 2378 0.2098 89.00 0.2678 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.9206 1.9771 2458 0.1924 91.00 0.2235 . . 119 . . . . 'X-RAY DIFFRACTION' . 1.9771 2.0409 2538 0.1792 94.00 0.2003 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.0409 2.1138 2547 0.1695 95.00 0.1953 . . 123 . . . . 'X-RAY DIFFRACTION' . 2.1138 2.1984 2585 0.1680 95.00 0.2067 . . 125 . . . . 'X-RAY DIFFRACTION' . 2.1984 2.2985 2607 0.1699 97.00 0.1849 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.2985 2.4196 2660 0.1813 98.00 0.1938 . . 151 . . . . 'X-RAY DIFFRACTION' . 2.4196 2.5711 2656 0.1903 98.00 0.2335 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.5711 2.7696 2671 0.2035 98.00 0.2529 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.7696 3.0481 2709 0.1971 99.00 0.2323 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.0481 3.4887 2729 0.1910 99.00 0.2360 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.4887 4.3938 2792 0.1659 100.00 0.1885 . . 135 . . . . 'X-RAY DIFFRACTION' . 4.3938 32.6896 2851 0.1904 98.00 0.2075 . . 168 . . . . # _struct.entry_id 3U6D _struct.title 'MutM set 1 GpGo' _struct.pdbx_descriptor 'Formamidopyrimidine-DNA glycosylase (E.C.3.2.2.23)/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U6D _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DNA glycosylase, DNA repair, lesion recognition, sequence context, disulfide crosslinking, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is same as asymmetric unit.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 2 ? VAL A 18 ? GLN A 3 VAL A 19 1 ? 17 HELX_P HELX_P2 2 TRP A 29 ? ASN A 31 ? TRP A 30 ASN A 32 5 ? 3 HELX_P HELX_P3 3 ASP A 38 ? ILE A 47 ? ASP A 39 ILE A 48 1 ? 10 HELX_P HELX_P4 4 GLU A 122 ? ARG A 127 ? GLU A 123 ARG A 128 5 ? 6 HELX_P HELX_P5 5 SER A 143 ? LYS A 153 ? SER A 144 LYS A 154 1 ? 11 HELX_P HELX_P6 6 SER A 157 ? LEU A 163 ? SER A 158 LEU A 164 1 ? 7 HELX_P HELX_P7 7 GLY A 172 ? GLY A 184 ? GLY A 173 GLY A 185 1 ? 13 HELX_P HELX_P8 8 PRO A 190 ? LEU A 194 ? PRO A 191 LEU A 195 5 ? 5 HELX_P HELX_P9 9 SER A 195 ? MET A 215 ? SER A 196 MET A 216 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? C DG 7 "O3'" ? ? ? 1_555 C 8OG 8 P ? ? C DG 7 C 8OG 8 1_555 ? ? ? ? ? ? ? 1.606 ? covale2 covale ? ? C 8OG 8 "O3'" ? ? ? 1_555 C DG 9 P ? ? C 8OG 8 C DG 9 1_555 ? ? ? ? ? ? ? 1.607 ? covale3 covale ? ? C DA 10 "O3'" ? ? ? 1_555 C 08Q 11 P ? ? C DA 10 C 08Q 11 1_555 ? ? ? ? ? ? ? 1.589 ? covale4 covale ? ? A CYS 165 SG ? ? ? 1_555 C 08Q 11 S ? ? A CYS 166 C 08Q 11 1_555 ? ? ? ? ? ? ? 2.098 ? metalc1 metalc ? ? A CYS 271 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 272 A ZN 300 1_555 ? ? ? ? ? ? ? 2.282 ? metalc2 metalc ? ? A CYS 268 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 269 A ZN 300 1_555 ? ? ? ? ? ? ? 2.339 ? metalc3 metalc ? ? A CYS 251 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 252 A ZN 300 1_555 ? ? ? ? ? ? ? 2.354 ? metalc4 metalc ? ? A CYS 248 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 249 A ZN 300 1_555 ? ? ? ? ? ? ? 2.392 ? hydrog1 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 15 N3 ? ? B DG 3 C DC 15 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog2 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 14 N1 ? ? B DT 4 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 14 N6 ? ? B DT 4 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 6 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 6 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 6 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 8 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 8 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 9 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 9 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 9 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 10 C DG 7 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? hydrog15 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C 8OG 8 N1 ? ? B DC 10 C 8OG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C 8OG 8 O6 ? ? B DC 10 C 8OG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C 8OG 8 N2 ? ? B DC 10 C 8OG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 11 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 11 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 11 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 12 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 12 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 12 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 35 A . ? HIS 36 A PRO 36 A ? PRO 37 A 1 -7.13 2 PRO 128 A . ? PRO 129 A PRO 129 A ? PRO 130 A 1 4.37 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 22 ? ILE A 27 ? ILE A 23 ILE A 28 A 2 THR A 93 ? PHE A 99 ? THR A 94 PHE A 100 A 3 SER A 103 ? ARG A 108 ? SER A 104 ARG A 109 A 4 ARG A 79 ? SER A 84 ? ARG A 80 SER A 85 B 1 ILE A 33 ? HIS A 35 ? ILE A 34 HIS A 36 B 2 THR A 115 ? ALA A 120 ? THR A 116 ALA A 121 B 3 ASP A 68 ? HIS A 73 ? ASP A 69 HIS A 74 B 4 PHE A 60 ? LEU A 64 ? PHE A 61 LEU A 65 B 5 GLY A 53 ? ARG A 57 ? GLY A 54 ARG A 58 C 1 GLU A 256 ? VAL A 260 ? GLU A 257 VAL A 261 C 2 ARG A 263 ? TYR A 267 ? ARG A 264 TYR A 268 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 23 ? N GLU A 24 O CYS A 98 ? O CYS A 99 A 2 3 N VAL A 95 ? N VAL A 96 O TYR A 107 ? O TYR A 108 A 3 4 O ARG A 106 ? O ARG A 107 N ALA A 81 ? N ALA A 82 B 1 2 N ARG A 34 ? N ARG A 35 O MET A 116 ? O MET A 117 B 2 3 O HIS A 117 ? O HIS A 118 N ILE A 71 ? N ILE A 72 B 3 4 O LEU A 70 ? O LEU A 71 N PHE A 63 ? N PHE A 64 B 4 5 O LYS A 62 ? O LYS A 63 N GLU A 55 ? N GLU A 56 C 1 2 N GLU A 256 ? N GLU A 257 O TYR A 267 ? O TYR A 268 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 248 ? CYS A 249 . ? 1_555 ? 2 AC1 4 CYS A 251 ? CYS A 252 . ? 1_555 ? 3 AC1 4 CYS A 268 ? CYS A 269 . ? 1_555 ? 4 AC1 4 CYS A 271 ? CYS A 272 . ? 1_555 ? # _database_PDB_matrix.entry_id 3U6D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3U6D _atom_sites.fract_transf_matrix[1][1] 0.022130 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010690 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009556 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 2 2 PRO PRO A . n A 1 2 GLN 2 3 3 GLN GLN A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 GLU 5 6 6 GLU GLU A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 GLU 7 8 8 GLU GLU A . n A 1 8 THR 8 9 9 THR THR A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 ARG 10 11 11 ARG ARG A . n A 1 11 ARG 11 12 12 ARG ARG A . n A 1 12 THR 12 13 13 THR THR A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 PRO 15 16 16 PRO PRO A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 ILE 17 18 18 ILE ILE A . n A 1 18 VAL 18 19 19 VAL VAL A . n A 1 19 GLY 19 20 20 GLY GLY A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 THR 21 22 22 THR THR A . n A 1 22 ILE 22 23 23 ILE ILE A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 ASP 24 25 25 ASP ASP A . n A 1 25 VAL 25 26 26 VAL VAL A . n A 1 26 ARG 26 27 27 ARG ARG A . n A 1 27 ILE 27 28 28 ILE ILE A . n A 1 28 PHE 28 29 29 PHE PHE A . n A 1 29 TRP 29 30 30 TRP TRP A . n A 1 30 PRO 30 31 31 PRO PRO A . n A 1 31 ASN 31 32 32 ASN ASN A . n A 1 32 ILE 32 33 33 ILE ILE A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 ARG 34 35 35 ARG ARG A . n A 1 35 HIS 35 36 36 HIS HIS A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 ARG 37 38 38 ARG ARG A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 SER 39 40 40 SER SER A . n A 1 40 GLU 40 41 41 GLU GLU A . n A 1 41 ALA 41 42 42 ALA ALA A . n A 1 42 PHE 42 43 43 PHE PHE A . n A 1 43 ALA 43 44 44 ALA ALA A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 ARG 45 46 46 ARG ARG A . n A 1 46 MET 46 47 47 MET MET A . n A 1 47 ILE 47 48 48 ILE ILE A . n A 1 48 GLY 48 49 49 GLY GLY A . n A 1 49 GLN 49 50 50 GLN GLN A . n A 1 50 THR 50 51 51 THR THR A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 ARG 52 53 53 ARG ARG A . n A 1 53 GLY 53 54 54 GLY GLY A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 GLU 55 56 56 GLU GLU A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 ARG 57 58 58 ARG ARG A . n A 1 58 GLY 58 59 59 GLY GLY A . n A 1 59 LYS 59 60 60 LYS LYS A . n A 1 60 PHE 60 61 61 PHE PHE A . n A 1 61 LEU 61 62 62 LEU LEU A . n A 1 62 LYS 62 63 63 LYS LYS A . n A 1 63 PHE 63 64 64 PHE PHE A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 LEU 65 66 66 LEU LEU A . n A 1 66 ASP 66 67 67 ASP ASP A . n A 1 67 ARG 67 68 68 ARG ARG A . n A 1 68 ASP 68 69 69 ASP ASP A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 LEU 70 71 71 LEU LEU A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 SER 72 73 73 SER SER A . n A 1 73 HIS 73 74 74 HIS HIS A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 ARG 75 76 76 ARG ARG A . n A 1 76 MET 76 77 77 MET MET A . n A 1 77 GLU 77 78 78 GLU GLU A . n A 1 78 GLY 78 79 79 GLY GLY A . n A 1 79 ARG 79 80 80 ARG ARG A . n A 1 80 TYR 80 81 81 TYR TYR A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 VAL 82 83 83 VAL VAL A . n A 1 83 ALA 83 84 84 ALA ALA A . n A 1 84 SER 84 85 85 SER SER A . n A 1 85 ALA 85 86 86 ALA ALA A . n A 1 86 LEU 86 87 87 LEU LEU A . n A 1 87 GLU 87 88 88 GLU GLU A . n A 1 88 PRO 88 89 89 PRO PRO A . n A 1 89 LEU 89 90 90 LEU LEU A . n A 1 90 GLU 90 91 91 GLU GLU A . n A 1 91 PRO 91 92 92 PRO PRO A . n A 1 92 HIS 92 93 93 HIS HIS A . n A 1 93 THR 93 94 94 THR THR A . n A 1 94 HIS 94 95 95 HIS HIS A . n A 1 95 VAL 95 96 96 VAL VAL A . n A 1 96 VAL 96 97 97 VAL VAL A . n A 1 97 PHE 97 98 98 PHE PHE A . n A 1 98 CYS 98 99 99 CYS CYS A . n A 1 99 PHE 99 100 100 PHE PHE A . n A 1 100 THR 100 101 101 THR THR A . n A 1 101 ASP 101 102 102 ASP ASP A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 SER 103 104 104 SER SER A . n A 1 104 GLU 104 105 105 GLU GLU A . n A 1 105 LEU 105 106 106 LEU LEU A . n A 1 106 ARG 106 107 107 ARG ARG A . n A 1 107 TYR 107 108 108 TYR TYR A . n A 1 108 ARG 108 109 109 ARG ARG A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 VAL 110 111 111 VAL VAL A . n A 1 111 ARG 111 112 112 ARG ARG A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 PHE 113 114 114 PHE PHE A . n A 1 114 GLY 114 115 115 GLY GLY A . n A 1 115 THR 115 116 116 THR THR A . n A 1 116 MET 116 117 117 MET MET A . n A 1 117 HIS 117 118 118 HIS HIS A . n A 1 118 VAL 118 119 119 VAL VAL A . n A 1 119 TYR 119 120 120 TYR TYR A . n A 1 120 ALA 120 121 121 ALA ALA A . n A 1 121 LYS 121 122 122 LYS LYS A . n A 1 122 GLU 122 123 123 GLU GLU A . n A 1 123 GLU 123 124 124 GLU GLU A . n A 1 124 ALA 124 125 125 ALA ALA A . n A 1 125 ASP 125 126 126 ASP ASP A . n A 1 126 ARG 126 127 127 ARG ARG A . n A 1 127 ARG 127 128 128 ARG ARG A . n A 1 128 PRO 128 129 129 PRO PRO A . n A 1 129 PRO 129 130 130 PRO PRO A . n A 1 130 LEU 130 131 131 LEU LEU A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 GLU 132 133 133 GLU GLU A . n A 1 133 LEU 133 134 134 LEU LEU A . n A 1 134 GLY 134 135 135 GLY GLY A . n A 1 135 PRO 135 136 136 PRO PRO A . n A 1 136 GLU 136 137 137 GLU GLU A . n A 1 137 PRO 137 138 138 PRO PRO A . n A 1 138 LEU 138 139 139 LEU LEU A . n A 1 139 SER 139 140 140 SER SER A . n A 1 140 PRO 140 141 141 PRO PRO A . n A 1 141 ALA 141 142 142 ALA ALA A . n A 1 142 PHE 142 143 143 PHE PHE A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 PRO 144 145 145 PRO PRO A . n A 1 145 ALA 145 146 146 ALA ALA A . n A 1 146 VAL 146 147 147 VAL VAL A . n A 1 147 LEU 147 148 148 LEU LEU A . n A 1 148 ALA 148 149 149 ALA ALA A . n A 1 149 GLU 149 150 150 GLU GLU A . n A 1 150 ARG 150 151 151 ARG ARG A . n A 1 151 ALA 151 152 152 ALA ALA A . n A 1 152 VAL 152 153 153 VAL VAL A . n A 1 153 LYS 153 154 154 LYS LYS A . n A 1 154 THR 154 155 155 THR THR A . n A 1 155 LYS 155 156 156 LYS LYS A . n A 1 156 ARG 156 157 157 ARG ARG A . n A 1 157 SER 157 158 158 SER SER A . n A 1 158 VAL 158 159 159 VAL VAL A . n A 1 159 LYS 159 160 160 LYS LYS A . n A 1 160 ALA 160 161 161 ALA ALA A . n A 1 161 LEU 161 162 162 LEU LEU A . n A 1 162 LEU 162 163 163 LEU LEU A . n A 1 163 LEU 163 164 164 LEU LEU A . n A 1 164 ASP 164 165 165 ASP ASP A . n A 1 165 CYS 165 166 166 CYS CYS A . n A 1 166 THR 166 167 167 THR THR A . n A 1 167 VAL 167 168 168 VAL VAL A . n A 1 168 VAL 168 169 169 VAL VAL A . n A 1 169 ALA 169 170 170 ALA ALA A . n A 1 170 GLY 170 171 171 GLY GLY A . n A 1 171 PHE 171 172 172 PHE PHE A . n A 1 172 GLY 172 173 173 GLY GLY A . n A 1 173 ASN 173 174 174 ASN ASN A . n A 1 174 ILE 174 175 175 ILE ILE A . n A 1 175 TYR 175 176 176 TYR TYR A . n A 1 176 VAL 176 177 177 VAL VAL A . n A 1 177 ASP 177 178 178 ASP ASP A . n A 1 178 GLU 178 179 179 GLU GLU A . n A 1 179 SER 179 180 180 SER SER A . n A 1 180 LEU 180 181 181 LEU LEU A . n A 1 181 PHE 181 182 182 PHE PHE A . n A 1 182 ARG 182 183 183 ARG ARG A . n A 1 183 ALA 183 184 184 ALA ALA A . n A 1 184 GLY 184 185 185 GLY GLY A . n A 1 185 ILE 185 186 186 ILE ILE A . n A 1 186 LEU 186 187 187 LEU LEU A . n A 1 187 PRO 187 188 188 PRO PRO A . n A 1 188 GLY 188 189 189 GLY GLY A . n A 1 189 ARG 189 190 190 ARG ARG A . n A 1 190 PRO 190 191 191 PRO PRO A . n A 1 191 ALA 191 192 192 ALA ALA A . n A 1 192 ALA 192 193 193 ALA ALA A . n A 1 193 SER 193 194 194 SER SER A . n A 1 194 LEU 194 195 195 LEU LEU A . n A 1 195 SER 195 196 196 SER SER A . n A 1 196 SER 196 197 197 SER SER A . n A 1 197 LYS 197 198 198 LYS LYS A . n A 1 198 GLU 198 199 199 GLU GLU A . n A 1 199 ILE 199 200 200 ILE ILE A . n A 1 200 GLU 200 201 201 GLU GLU A . n A 1 201 ARG 201 202 202 ARG ARG A . n A 1 202 LEU 202 203 203 LEU LEU A . n A 1 203 HIS 203 204 204 HIS HIS A . n A 1 204 GLU 204 205 205 GLU GLU A . n A 1 205 GLU 205 206 206 GLU GLU A . n A 1 206 MET 206 207 207 MET MET A . n A 1 207 VAL 207 208 208 VAL VAL A . n A 1 208 ALA 208 209 209 ALA ALA A . n A 1 209 THR 209 210 210 THR THR A . n A 1 210 ILE 210 211 211 ILE ILE A . n A 1 211 GLY 211 212 212 GLY GLY A . n A 1 212 GLU 212 213 213 GLU GLU A . n A 1 213 ALA 213 214 214 ALA ALA A . n A 1 214 VAL 214 215 215 VAL VAL A . n A 1 215 MET 215 216 216 MET MET A . n A 1 216 LYS 216 217 ? ? ? A . n A 1 217 GLY 217 218 ? ? ? A . n A 1 218 GLY 218 219 ? ? ? A . n A 1 219 SER 219 220 ? ? ? A . n A 1 220 THR 220 221 ? ? ? A . n A 1 221 PRO 221 222 ? ? ? A . n A 1 222 ARG 222 223 ? ? ? A . n A 1 223 THR 223 224 ? ? ? A . n A 1 224 TYR 224 225 ? ? ? A . n A 1 225 VAL 225 226 ? ? ? A . n A 1 226 ASN 226 227 ? ? ? A . n A 1 227 THR 227 228 ? ? ? A . n A 1 228 GLN 228 229 ? ? ? A . n A 1 229 GLY 229 230 ? ? ? A . n A 1 230 GLU 230 231 ? ? ? A . n A 1 231 ALA 231 232 ? ? ? A . n A 1 232 GLY 232 233 ? ? ? A . n A 1 233 THR 233 234 ? ? ? A . n A 1 234 PHE 234 235 ? ? ? A . n A 1 235 GLN 235 236 ? ? ? A . n A 1 236 HIS 236 237 ? ? ? A . n A 1 237 HIS 237 238 238 HIS HIS A . n A 1 238 LEU 238 239 239 LEU LEU A . n A 1 239 TYR 239 240 240 TYR TYR A . n A 1 240 VAL 240 241 241 VAL VAL A . n A 1 241 TYR 241 242 242 TYR TYR A . n A 1 242 GLY 242 243 243 GLY GLY A . n A 1 243 ARG 243 244 244 ARG ARG A . n A 1 244 GLN 244 245 245 GLN GLN A . n A 1 245 GLY 245 246 246 GLY GLY A . n A 1 246 ASN 246 247 247 ASN ASN A . n A 1 247 PRO 247 248 248 PRO PRO A . n A 1 248 CYS 248 249 249 CYS CYS A . n A 1 249 LYS 249 250 250 LYS LYS A . n A 1 250 ARG 250 251 251 ARG ARG A . n A 1 251 CYS 251 252 252 CYS CYS A . n A 1 252 GLY 252 253 253 GLY GLY A . n A 1 253 THR 253 254 254 THR THR A . n A 1 254 PRO 254 255 255 PRO PRO A . n A 1 255 ILE 255 256 256 ILE ILE A . n A 1 256 GLU 256 257 257 GLU GLU A . n A 1 257 LYS 257 258 258 LYS LYS A . n A 1 258 THR 258 259 259 THR THR A . n A 1 259 VAL 259 260 260 VAL VAL A . n A 1 260 VAL 260 261 261 VAL VAL A . n A 1 261 ALA 261 262 262 ALA ALA A . n A 1 262 GLY 262 263 263 GLY GLY A . n A 1 263 ARG 263 264 264 ARG ARG A . n A 1 264 GLY 264 265 265 GLY GLY A . n A 1 265 THR 265 266 266 THR THR A . n A 1 266 HIS 266 267 267 HIS HIS A . n A 1 267 TYR 267 268 268 TYR TYR A . n A 1 268 CYS 268 269 269 CYS CYS A . n A 1 269 PRO 269 270 270 PRO PRO A . n A 1 270 ARG 270 271 271 ARG ARG A . n A 1 271 CYS 271 272 272 CYS CYS A . n A 1 272 GLN 272 273 273 GLN GLN A . n A 1 273 ARG 273 274 274 ARG ARG A . n B 2 1 DA 1 1 ? ? ? B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DC 10 10 10 DC DC B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n B 2 13 DA 13 13 13 DA DA B . n B 2 14 DC 14 14 14 DC DC B . n B 2 15 DG 15 15 ? ? ? B . n B 2 16 DC 16 16 ? ? ? B . n C 3 1 DT 1 1 ? ? ? C . n C 3 2 DG 2 2 ? ? ? C . n C 3 3 DC 3 3 ? ? ? C . n C 3 4 DG 4 4 ? ? ? C . n C 3 5 DT 5 5 ? ? ? C . n C 3 6 DC 6 6 6 DC DC C . n C 3 7 DG 7 7 7 DG DG C . n C 3 8 8OG 8 8 8 8OG 8OG C . n C 3 9 DG 9 9 9 DG DG C . n C 3 10 DA 10 10 10 DA DA C . n C 3 11 08Q 11 11 11 08Q 08Q C . n C 3 12 DC 12 12 12 DC DC C . n C 3 13 DT 13 13 13 DT DT C . n C 3 14 DA 14 14 14 DA DA C . n C 3 15 DC 15 15 15 DC DC C . n C 3 16 DC 16 16 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 300 300 ZN ZN A . E 5 HOH 1 401 1 HOH HOH A . E 5 HOH 2 402 2 HOH HOH A . E 5 HOH 3 403 3 HOH HOH A . E 5 HOH 4 404 4 HOH HOH A . E 5 HOH 5 405 5 HOH HOH A . E 5 HOH 6 406 6 HOH HOH A . E 5 HOH 7 407 8 HOH HOH A . E 5 HOH 8 408 9 HOH HOH A . E 5 HOH 9 409 10 HOH HOH A . E 5 HOH 10 410 11 HOH HOH A . E 5 HOH 11 411 12 HOH HOH A . E 5 HOH 12 412 13 HOH HOH A . E 5 HOH 13 413 14 HOH HOH A . E 5 HOH 14 414 15 HOH HOH A . E 5 HOH 15 415 16 HOH HOH A . E 5 HOH 16 416 17 HOH HOH A . E 5 HOH 17 417 18 HOH HOH A . E 5 HOH 18 418 19 HOH HOH A . E 5 HOH 19 419 20 HOH HOH A . E 5 HOH 20 420 21 HOH HOH A . E 5 HOH 21 421 22 HOH HOH A . E 5 HOH 22 422 23 HOH HOH A . E 5 HOH 23 423 24 HOH HOH A . E 5 HOH 24 424 25 HOH HOH A . E 5 HOH 25 425 27 HOH HOH A . E 5 HOH 26 426 28 HOH HOH A . E 5 HOH 27 427 29 HOH HOH A . E 5 HOH 28 428 30 HOH HOH A . E 5 HOH 29 429 31 HOH HOH A . E 5 HOH 30 430 32 HOH HOH A . E 5 HOH 31 431 33 HOH HOH A . E 5 HOH 32 432 34 HOH HOH A . E 5 HOH 33 433 35 HOH HOH A . E 5 HOH 34 434 36 HOH HOH A . E 5 HOH 35 435 37 HOH HOH A . E 5 HOH 36 436 38 HOH HOH A . E 5 HOH 37 437 39 HOH HOH A . E 5 HOH 38 438 40 HOH HOH A . E 5 HOH 39 439 41 HOH HOH A . E 5 HOH 40 440 42 HOH HOH A . E 5 HOH 41 441 43 HOH HOH A . E 5 HOH 42 442 44 HOH HOH A . E 5 HOH 43 443 45 HOH HOH A . E 5 HOH 44 444 46 HOH HOH A . E 5 HOH 45 445 47 HOH HOH A . E 5 HOH 46 446 48 HOH HOH A . E 5 HOH 47 447 49 HOH HOH A . E 5 HOH 48 448 50 HOH HOH A . E 5 HOH 49 449 51 HOH HOH A . E 5 HOH 50 450 52 HOH HOH A . E 5 HOH 51 451 54 HOH HOH A . E 5 HOH 52 452 55 HOH HOH A . E 5 HOH 53 453 56 HOH HOH A . E 5 HOH 54 454 57 HOH HOH A . E 5 HOH 55 455 58 HOH HOH A . E 5 HOH 56 456 59 HOH HOH A . E 5 HOH 57 457 60 HOH HOH A . E 5 HOH 58 458 61 HOH HOH A . E 5 HOH 59 459 62 HOH HOH A . E 5 HOH 60 460 63 HOH HOH A . E 5 HOH 61 461 64 HOH HOH A . E 5 HOH 62 462 65 HOH HOH A . E 5 HOH 63 463 66 HOH HOH A . E 5 HOH 64 464 67 HOH HOH A . E 5 HOH 65 465 68 HOH HOH A . E 5 HOH 66 466 69 HOH HOH A . E 5 HOH 67 467 70 HOH HOH A . E 5 HOH 68 468 71 HOH HOH A . E 5 HOH 69 469 72 HOH HOH A . E 5 HOH 70 470 73 HOH HOH A . E 5 HOH 71 471 74 HOH HOH A . E 5 HOH 72 472 75 HOH HOH A . E 5 HOH 73 473 76 HOH HOH A . E 5 HOH 74 474 77 HOH HOH A . E 5 HOH 75 475 78 HOH HOH A . E 5 HOH 76 476 79 HOH HOH A . E 5 HOH 77 477 80 HOH HOH A . E 5 HOH 78 478 81 HOH HOH A . E 5 HOH 79 479 82 HOH HOH A . E 5 HOH 80 480 83 HOH HOH A . E 5 HOH 81 481 85 HOH HOH A . E 5 HOH 82 482 86 HOH HOH A . E 5 HOH 83 483 87 HOH HOH A . E 5 HOH 84 484 88 HOH HOH A . E 5 HOH 85 485 89 HOH HOH A . E 5 HOH 86 486 90 HOH HOH A . E 5 HOH 87 487 91 HOH HOH A . E 5 HOH 88 488 92 HOH HOH A . E 5 HOH 89 489 93 HOH HOH A . E 5 HOH 90 490 94 HOH HOH A . E 5 HOH 91 491 95 HOH HOH A . E 5 HOH 92 492 96 HOH HOH A . E 5 HOH 93 493 97 HOH HOH A . E 5 HOH 94 494 98 HOH HOH A . E 5 HOH 95 495 99 HOH HOH A . E 5 HOH 96 496 100 HOH HOH A . E 5 HOH 97 497 101 HOH HOH A . E 5 HOH 98 498 102 HOH HOH A . E 5 HOH 99 499 103 HOH HOH A . E 5 HOH 100 500 104 HOH HOH A . E 5 HOH 101 501 106 HOH HOH A . E 5 HOH 102 502 107 HOH HOH A . E 5 HOH 103 503 108 HOH HOH A . E 5 HOH 104 504 109 HOH HOH A . E 5 HOH 105 505 110 HOH HOH A . E 5 HOH 106 506 111 HOH HOH A . E 5 HOH 107 507 112 HOH HOH A . E 5 HOH 108 508 113 HOH HOH A . E 5 HOH 109 509 114 HOH HOH A . E 5 HOH 110 510 115 HOH HOH A . E 5 HOH 111 511 117 HOH HOH A . E 5 HOH 112 512 118 HOH HOH A . E 5 HOH 113 513 119 HOH HOH A . E 5 HOH 114 514 120 HOH HOH A . E 5 HOH 115 515 121 HOH HOH A . E 5 HOH 116 516 122 HOH HOH A . E 5 HOH 117 517 123 HOH HOH A . E 5 HOH 118 518 124 HOH HOH A . E 5 HOH 119 519 125 HOH HOH A . E 5 HOH 120 520 126 HOH HOH A . E 5 HOH 121 521 127 HOH HOH A . E 5 HOH 122 522 128 HOH HOH A . E 5 HOH 123 523 129 HOH HOH A . E 5 HOH 124 524 130 HOH HOH A . E 5 HOH 125 525 131 HOH HOH A . E 5 HOH 126 526 132 HOH HOH A . E 5 HOH 127 527 133 HOH HOH A . E 5 HOH 128 528 134 HOH HOH A . E 5 HOH 129 529 135 HOH HOH A . E 5 HOH 130 530 136 HOH HOH A . E 5 HOH 131 531 137 HOH HOH A . E 5 HOH 132 532 138 HOH HOH A . E 5 HOH 133 533 139 HOH HOH A . E 5 HOH 134 534 140 HOH HOH A . E 5 HOH 135 535 142 HOH HOH A . E 5 HOH 136 536 143 HOH HOH A . E 5 HOH 137 537 144 HOH HOH A . E 5 HOH 138 538 145 HOH HOH A . E 5 HOH 139 539 146 HOH HOH A . E 5 HOH 140 540 148 HOH HOH A . E 5 HOH 141 541 150 HOH HOH A . E 5 HOH 142 542 151 HOH HOH A . E 5 HOH 143 543 152 HOH HOH A . E 5 HOH 144 544 153 HOH HOH A . E 5 HOH 145 545 154 HOH HOH A . E 5 HOH 146 546 155 HOH HOH A . E 5 HOH 147 547 156 HOH HOH A . E 5 HOH 148 548 157 HOH HOH A . E 5 HOH 149 549 158 HOH HOH A . E 5 HOH 150 550 159 HOH HOH A . E 5 HOH 151 551 160 HOH HOH A . E 5 HOH 152 552 161 HOH HOH A . E 5 HOH 153 553 162 HOH HOH A . E 5 HOH 154 554 163 HOH HOH A . E 5 HOH 155 555 164 HOH HOH A . E 5 HOH 156 556 165 HOH HOH A . E 5 HOH 157 557 168 HOH HOH A . E 5 HOH 158 558 169 HOH HOH A . E 5 HOH 159 559 170 HOH HOH A . E 5 HOH 160 560 171 HOH HOH A . E 5 HOH 161 561 172 HOH HOH A . E 5 HOH 162 562 173 HOH HOH A . E 5 HOH 163 563 174 HOH HOH A . E 5 HOH 164 564 175 HOH HOH A . E 5 HOH 165 565 176 HOH HOH A . E 5 HOH 166 566 177 HOH HOH A . E 5 HOH 167 567 178 HOH HOH A . E 5 HOH 168 568 179 HOH HOH A . E 5 HOH 169 569 180 HOH HOH A . E 5 HOH 170 570 181 HOH HOH A . E 5 HOH 171 571 182 HOH HOH A . E 5 HOH 172 572 183 HOH HOH A . E 5 HOH 173 573 184 HOH HOH A . E 5 HOH 174 574 185 HOH HOH A . E 5 HOH 175 575 186 HOH HOH A . E 5 HOH 176 576 187 HOH HOH A . E 5 HOH 177 577 189 HOH HOH A . E 5 HOH 178 578 190 HOH HOH A . E 5 HOH 179 579 191 HOH HOH A . E 5 HOH 180 580 192 HOH HOH A . E 5 HOH 181 581 193 HOH HOH A . E 5 HOH 182 582 194 HOH HOH A . E 5 HOH 183 583 197 HOH HOH A . E 5 HOH 184 584 198 HOH HOH A . E 5 HOH 185 585 199 HOH HOH A . E 5 HOH 186 586 202 HOH HOH A . E 5 HOH 187 587 203 HOH HOH A . E 5 HOH 188 588 204 HOH HOH A . E 5 HOH 189 589 205 HOH HOH A . E 5 HOH 190 590 206 HOH HOH A . E 5 HOH 191 591 207 HOH HOH A . E 5 HOH 192 592 208 HOH HOH A . E 5 HOH 193 593 209 HOH HOH A . E 5 HOH 194 594 210 HOH HOH A . E 5 HOH 195 595 211 HOH HOH A . E 5 HOH 196 596 212 HOH HOH A . E 5 HOH 197 597 213 HOH HOH A . E 5 HOH 198 598 214 HOH HOH A . E 5 HOH 199 599 215 HOH HOH A . E 5 HOH 200 600 216 HOH HOH A . E 5 HOH 201 601 217 HOH HOH A . E 5 HOH 202 602 218 HOH HOH A . E 5 HOH 203 603 219 HOH HOH A . E 5 HOH 204 604 220 HOH HOH A . E 5 HOH 205 605 221 HOH HOH A . E 5 HOH 206 606 222 HOH HOH A . E 5 HOH 207 607 224 HOH HOH A . E 5 HOH 208 608 225 HOH HOH A . E 5 HOH 209 609 226 HOH HOH A . E 5 HOH 210 610 227 HOH HOH A . E 5 HOH 211 611 228 HOH HOH A . E 5 HOH 212 612 229 HOH HOH A . E 5 HOH 213 613 230 HOH HOH A . E 5 HOH 214 614 232 HOH HOH A . E 5 HOH 215 615 233 HOH HOH A . E 5 HOH 216 616 234 HOH HOH A . E 5 HOH 217 617 235 HOH HOH A . E 5 HOH 218 618 236 HOH HOH A . E 5 HOH 219 619 237 HOH HOH A . E 5 HOH 220 620 239 HOH HOH A . E 5 HOH 221 621 240 HOH HOH A . E 5 HOH 222 622 241 HOH HOH A . E 5 HOH 223 623 242 HOH HOH A . E 5 HOH 224 624 244 HOH HOH A . E 5 HOH 225 625 245 HOH HOH A . E 5 HOH 226 626 246 HOH HOH A . E 5 HOH 227 627 247 HOH HOH A . E 5 HOH 228 628 249 HOH HOH A . E 5 HOH 229 629 250 HOH HOH A . E 5 HOH 230 630 251 HOH HOH A . E 5 HOH 231 631 252 HOH HOH A . E 5 HOH 232 632 253 HOH HOH A . E 5 HOH 233 633 254 HOH HOH A . E 5 HOH 234 634 255 HOH HOH A . E 5 HOH 235 635 256 HOH HOH A . E 5 HOH 236 636 258 HOH HOH A . E 5 HOH 237 637 259 HOH HOH A . E 5 HOH 238 638 260 HOH HOH A . E 5 HOH 239 639 261 HOH HOH A . E 5 HOH 240 640 262 HOH HOH A . E 5 HOH 241 641 263 HOH HOH A . E 5 HOH 242 642 264 HOH HOH A . E 5 HOH 243 643 265 HOH HOH A . E 5 HOH 244 644 267 HOH HOH A . E 5 HOH 245 645 268 HOH HOH A . E 5 HOH 246 646 269 HOH HOH A . E 5 HOH 247 647 271 HOH HOH A . E 5 HOH 248 648 273 HOH HOH A . F 5 HOH 1 101 196 HOH HOH B . F 5 HOH 2 102 223 HOH HOH B . F 5 HOH 3 103 257 HOH HOH B . F 5 HOH 4 104 272 HOH HOH B . G 5 HOH 1 101 26 HOH HOH C . G 5 HOH 2 102 53 HOH HOH C . G 5 HOH 3 103 105 HOH HOH C . G 5 HOH 4 104 141 HOH HOH C . G 5 HOH 5 105 166 HOH HOH C . G 5 HOH 6 106 188 HOH HOH C . G 5 HOH 7 107 195 HOH HOH C . G 5 HOH 8 108 266 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id 8OG _pdbx_struct_mod_residue.label_seq_id 8 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id 8OG _pdbx_struct_mod_residue.auth_seq_id 8 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3750 ? 1 MORE -15 ? 1 'SSA (A^2)' 14350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 271 ? A CYS 272 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 268 ? A CYS 269 ? 1_555 118.8 ? 2 SG ? A CYS 271 ? A CYS 272 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 251 ? A CYS 252 ? 1_555 112.0 ? 3 SG ? A CYS 268 ? A CYS 269 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 251 ? A CYS 252 ? 1_555 98.1 ? 4 SG ? A CYS 271 ? A CYS 272 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 248 ? A CYS 249 ? 1_555 108.9 ? 5 SG ? A CYS 268 ? A CYS 269 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 248 ? A CYS 249 ? 1_555 110.1 ? 6 SG ? A CYS 251 ? A CYS 252 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 248 ? A CYS 249 ? 1_555 108.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2013-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Derived calculations' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 13.9354 -4.0963 17.1254 0.0946 0.1617 0.1496 0.0154 -0.0183 -0.0579 -0.2483 1.0834 0.9110 0.0019 -0.1245 0.9064 -0.0138 -0.0399 0.0330 -0.0300 -0.0955 0.0940 -0.0501 -0.0652 0.0894 'X-RAY DIFFRACTION' 2 ? refined 4.3188 -11.9355 27.2554 0.3543 0.4075 0.4447 -0.0171 0.0423 -0.0433 3.2259 7.3923 1.9803 -4.4059 -2.5286 3.1813 -0.6676 -0.2138 -0.5891 1.0393 0.2296 1.1710 0.1301 -0.0258 0.4018 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain B or chain C' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 66 ? ? -105.59 -156.82 2 1 ARG A 76 ? ? 49.58 -138.76 3 1 ASP A 110 ? ? -169.24 103.05 4 1 GLU A 133 ? ? 81.09 -5.88 5 1 VAL A 241 ? ? -134.81 -36.87 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DG 2 ? P ? B DG 2 P 2 1 Y 1 B DG 2 ? OP1 ? B DG 2 OP1 3 1 Y 1 B DG 2 ? OP2 ? B DG 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 217 ? A LYS 216 2 1 Y 1 A GLY 218 ? A GLY 217 3 1 Y 1 A GLY 219 ? A GLY 218 4 1 Y 1 A SER 220 ? A SER 219 5 1 Y 1 A THR 221 ? A THR 220 6 1 Y 1 A PRO 222 ? A PRO 221 7 1 Y 1 A ARG 223 ? A ARG 222 8 1 Y 1 A THR 224 ? A THR 223 9 1 Y 1 A TYR 225 ? A TYR 224 10 1 Y 1 A VAL 226 ? A VAL 225 11 1 Y 1 A ASN 227 ? A ASN 226 12 1 Y 1 A THR 228 ? A THR 227 13 1 Y 1 A GLN 229 ? A GLN 228 14 1 Y 1 A GLY 230 ? A GLY 229 15 1 Y 1 A GLU 231 ? A GLU 230 16 1 Y 1 A ALA 232 ? A ALA 231 17 1 Y 1 A GLY 233 ? A GLY 232 18 1 Y 1 A THR 234 ? A THR 233 19 1 Y 1 A PHE 235 ? A PHE 234 20 1 Y 1 A GLN 236 ? A GLN 235 21 1 Y 1 A HIS 237 ? A HIS 236 22 1 Y 1 B DA 1 ? B DA 1 23 1 Y 1 B DG 15 ? B DG 15 24 1 Y 1 B DC 16 ? B DC 16 25 1 Y 1 C DT 1 ? C DT 1 26 1 Y 1 C DG 2 ? C DG 2 27 1 Y 1 C DC 3 ? C DC 3 28 1 Y 1 C DG 4 ? C DG 4 29 1 Y 1 C DT 5 ? C DT 5 30 1 Y 1 C DC 16 ? C DC 16 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3U6D 'double helix' 3U6D 'b-form double helix' 3U6D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 3 1_555 C DC 15 1_555 0.362 0.397 0.171 -2.066 -19.037 11.226 1 B_DG3:DC15_C B 3 ? C 15 ? ? 1 1 B DT 4 1_555 C DA 14 1_555 -0.270 -0.119 0.440 -2.359 -7.345 2.094 2 B_DT4:DA14_C B 4 ? C 14 ? 20 1 1 B DA 5 1_555 C DT 13 1_555 0.749 0.196 0.000 11.688 -13.715 3.606 3 B_DA5:DT13_C B 5 ? C 13 ? 20 1 1 B DG 6 1_555 C DC 12 1_555 0.061 -0.266 -0.202 -8.415 -21.064 2.283 4 B_DG6:DC12_C B 6 ? C 12 ? 19 1 1 B DT 8 1_555 C DA 10 1_555 -0.198 -0.026 -0.054 -2.809 -5.033 3.315 5 B_DT8:DA10_C B 8 ? C 10 ? 20 1 1 B DC 9 1_555 C DG 9 1_555 0.329 -0.148 -0.310 15.158 -3.229 -1.322 6 B_DC9:DG9_C B 9 ? C 9 ? 19 1 1 B DC 10 1_555 C 8OG 8 1_555 0.209 0.050 0.967 -30.837 0.646 1.259 7 B_DC10:8OG8_C B 10 ? C 8 ? 19 1 1 B DC 11 1_555 C DG 7 1_555 0.187 0.142 0.413 -3.310 -1.581 9.305 8 B_DC11:DG7_C B 11 ? C 7 ? 19 1 1 B DG 12 1_555 C DC 6 1_555 -0.638 0.195 0.319 6.532 -18.628 1.259 9 B_DG12:DC6_C B 12 ? C 6 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 3 1_555 C DC 15 1_555 B DT 4 1_555 C DA 14 1_555 0.455 -0.137 3.230 -2.444 -2.036 35.651 0.066 -1.086 3.196 -3.317 3.982 35.788 1 BB_DG3DT4:DA14DC15_CC B 3 ? C 15 ? B 4 ? C 14 ? 1 B DT 4 1_555 C DA 14 1_555 B DA 5 1_555 C DT 13 1_555 -0.488 0.568 2.931 2.437 1.382 40.425 0.683 0.948 2.916 1.997 -3.522 40.518 2 BB_DT4DA5:DT13DA14_CC B 4 ? C 14 ? B 5 ? C 13 ? 1 B DA 5 1_555 C DT 13 1_555 B DG 6 1_555 C DC 12 1_555 -0.131 -0.490 3.720 -1.330 5.095 31.584 -1.926 -0.034 3.601 9.280 2.422 32.009 3 BB_DA5DG6:DC12DT13_CC B 5 ? C 13 ? B 6 ? C 12 ? 1 B DG 6 1_555 C DC 12 1_555 B DT 8 1_555 C DA 10 1_555 0.533 -0.096 6.338 -0.110 0.119 69.342 -0.093 -0.476 6.337 0.105 0.097 69.342 4 BB_DG6DT8:DA10DC12_CC B 6 ? C 12 ? B 8 ? C 10 ? 1 B DT 8 1_555 C DA 10 1_555 B DC 9 1_555 C DG 9 1_555 0.151 0.743 2.955 6.314 12.263 26.128 -1.056 0.999 2.960 25.029 -12.887 29.490 5 BB_DT8DC9:DG9DA10_CC B 8 ? C 10 ? B 9 ? C 9 ? 1 B DC 9 1_555 C DG 9 1_555 B DC 10 1_555 C 8OG 8 1_555 0.728 0.908 5.549 -6.632 51.406 23.142 -4.797 -1.512 3.085 67.015 8.645 56.436 6 BB_DC9DC10:8OG8DG9_CC B 9 ? C 9 ? B 10 ? C 8 ? 1 B DC 10 1_555 C 8OG 8 1_555 B DC 11 1_555 C DG 7 1_555 -0.479 1.237 2.806 1.304 12.706 14.660 -2.593 2.063 2.896 41.043 -4.213 19.421 7 BB_DC10DC11:DG78OG8_CC B 10 ? C 8 ? B 11 ? C 7 ? 1 B DC 11 1_555 C DG 7 1_555 B DG 12 1_555 C DC 6 1_555 -0.747 1.832 3.209 -2.827 -0.533 41.823 2.616 0.754 3.228 -0.745 3.955 41.917 8 BB_DC11DG12:DC6DG7_CC B 11 ? C 7 ? B 12 ? C 6 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH #