data_3U6L # _entry.id 3U6L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U6L NDB NA1334 RCSB RCSB068370 WWPDB D_1000068370 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3U6C . unspecified PDB 3U6D . unspecified PDB 3U6E . unspecified PDB 3U6M . unspecified PDB 3U6O . unspecified PDB 3U6P . unspecified PDB 3U6Q . unspecified PDB 3U6S . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3U6L _pdbx_database_status.recvd_initial_deposition_date 2011-10-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sung, R.J.' 1 'Zhang, M.' 2 'Qi, Y.' 3 'Verdine, G.L.' 4 # _citation.id primary _citation.title 'Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 18044 _citation.page_last 18054 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22465958 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.313635 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sung, R.J.' 1 primary 'Zhang, M.' 2 primary 'Qi, Y.' 3 primary 'Verdine, G.L.' 4 # _cell.entry_id 3U6L _cell.length_a 45.188 _cell.length_b 93.541 _cell.length_c 104.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U6L _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Formamidopyrimidine-DNA glycosylase' 30580.330 1 3.2.2.23 'E3Q, Q166C, V222P' ? ? 2 polymer syn ;DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*GP*GP*AP*CP*GP*C)-3') ; 4973.230 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*GP*TP*(CX2)P*TP*AP*CP*C)-3') ; 4901.250 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 262 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR ; ;PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR ; A ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DC)(DG)(DC)' AGGTAGACCGGGACGC B ? 3 polydeoxyribonucleotide no yes '(DT)(DG)(DC)(DG)(DT)(DC)(DC)(DC)(8OG)(DG)(DT)(CX2)(DT)(DA)(DC)(DC)' TGCGTCCCGGTXTACC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 LEU n 1 4 PRO n 1 5 GLU n 1 6 VAL n 1 7 GLU n 1 8 THR n 1 9 ILE n 1 10 ARG n 1 11 ARG n 1 12 THR n 1 13 LEU n 1 14 LEU n 1 15 PRO n 1 16 LEU n 1 17 ILE n 1 18 VAL n 1 19 GLY n 1 20 LYS n 1 21 THR n 1 22 ILE n 1 23 GLU n 1 24 ASP n 1 25 VAL n 1 26 ARG n 1 27 ILE n 1 28 PHE n 1 29 TRP n 1 30 PRO n 1 31 ASN n 1 32 ILE n 1 33 ILE n 1 34 ARG n 1 35 HIS n 1 36 PRO n 1 37 ARG n 1 38 ASP n 1 39 SER n 1 40 GLU n 1 41 ALA n 1 42 PHE n 1 43 ALA n 1 44 ALA n 1 45 ARG n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLN n 1 50 THR n 1 51 VAL n 1 52 ARG n 1 53 GLY n 1 54 LEU n 1 55 GLU n 1 56 ARG n 1 57 ARG n 1 58 GLY n 1 59 LYS n 1 60 PHE n 1 61 LEU n 1 62 LYS n 1 63 PHE n 1 64 LEU n 1 65 LEU n 1 66 ASP n 1 67 ARG n 1 68 ASP n 1 69 ALA n 1 70 LEU n 1 71 ILE n 1 72 SER n 1 73 HIS n 1 74 LEU n 1 75 ARG n 1 76 MET n 1 77 GLU n 1 78 GLY n 1 79 ARG n 1 80 TYR n 1 81 ALA n 1 82 VAL n 1 83 ALA n 1 84 SER n 1 85 ALA n 1 86 LEU n 1 87 GLU n 1 88 PRO n 1 89 LEU n 1 90 GLU n 1 91 PRO n 1 92 HIS n 1 93 THR n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 PHE n 1 98 CYS n 1 99 PHE n 1 100 THR n 1 101 ASP n 1 102 GLY n 1 103 SER n 1 104 GLU n 1 105 LEU n 1 106 ARG n 1 107 TYR n 1 108 ARG n 1 109 ASP n 1 110 VAL n 1 111 ARG n 1 112 LYS n 1 113 PHE n 1 114 GLY n 1 115 THR n 1 116 MET n 1 117 HIS n 1 118 VAL n 1 119 TYR n 1 120 ALA n 1 121 LYS n 1 122 GLU n 1 123 GLU n 1 124 ALA n 1 125 ASP n 1 126 ARG n 1 127 ARG n 1 128 PRO n 1 129 PRO n 1 130 LEU n 1 131 ALA n 1 132 GLU n 1 133 LEU n 1 134 GLY n 1 135 PRO n 1 136 GLU n 1 137 PRO n 1 138 LEU n 1 139 SER n 1 140 PRO n 1 141 ALA n 1 142 PHE n 1 143 SER n 1 144 PRO n 1 145 ALA n 1 146 VAL n 1 147 LEU n 1 148 ALA n 1 149 GLU n 1 150 ARG n 1 151 ALA n 1 152 VAL n 1 153 LYS n 1 154 THR n 1 155 LYS n 1 156 ARG n 1 157 SER n 1 158 VAL n 1 159 LYS n 1 160 ALA n 1 161 LEU n 1 162 LEU n 1 163 LEU n 1 164 ASP n 1 165 CYS n 1 166 THR n 1 167 VAL n 1 168 VAL n 1 169 ALA n 1 170 GLY n 1 171 PHE n 1 172 GLY n 1 173 ASN n 1 174 ILE n 1 175 TYR n 1 176 VAL n 1 177 ASP n 1 178 GLU n 1 179 SER n 1 180 LEU n 1 181 PHE n 1 182 ARG n 1 183 ALA n 1 184 GLY n 1 185 ILE n 1 186 LEU n 1 187 PRO n 1 188 GLY n 1 189 ARG n 1 190 PRO n 1 191 ALA n 1 192 ALA n 1 193 SER n 1 194 LEU n 1 195 SER n 1 196 SER n 1 197 LYS n 1 198 GLU n 1 199 ILE n 1 200 GLU n 1 201 ARG n 1 202 LEU n 1 203 HIS n 1 204 GLU n 1 205 GLU n 1 206 MET n 1 207 VAL n 1 208 ALA n 1 209 THR n 1 210 ILE n 1 211 GLY n 1 212 GLU n 1 213 ALA n 1 214 VAL n 1 215 MET n 1 216 LYS n 1 217 GLY n 1 218 GLY n 1 219 SER n 1 220 THR n 1 221 PRO n 1 222 ARG n 1 223 THR n 1 224 TYR n 1 225 VAL n 1 226 ASN n 1 227 THR n 1 228 GLN n 1 229 GLY n 1 230 GLU n 1 231 ALA n 1 232 GLY n 1 233 THR n 1 234 PHE n 1 235 GLN n 1 236 HIS n 1 237 HIS n 1 238 LEU n 1 239 TYR n 1 240 VAL n 1 241 TYR n 1 242 GLY n 1 243 ARG n 1 244 GLN n 1 245 GLY n 1 246 ASN n 1 247 PRO n 1 248 CYS n 1 249 LYS n 1 250 ARG n 1 251 CYS n 1 252 GLY n 1 253 THR n 1 254 PRO n 1 255 ILE n 1 256 GLU n 1 257 LYS n 1 258 THR n 1 259 VAL n 1 260 VAL n 1 261 ALA n 1 262 GLY n 1 263 ARG n 1 264 GLY n 1 265 THR n 1 266 HIS n 1 267 TYR n 1 268 CYS n 1 269 PRO n 1 270 ARG n 1 271 CYS n 1 272 GLN n 1 273 ARG n 2 1 DA n 2 2 DG n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DC n 2 10 DG n 2 11 DG n 2 12 DG n 2 13 DA n 2 14 DC n 2 15 DG n 2 16 DC n 3 1 DT n 3 2 DG n 3 3 DC n 3 4 DG n 3 5 DT n 3 6 DC n 3 7 DC n 3 8 DC n 3 9 8OG n 3 10 DG n 3 11 DT n 3 12 CX2 n 3 13 DT n 3 14 DA n 3 15 DC n 3 16 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'synthetic DNA' 3 1 sample ? ? ? ? ? 'synthetic DNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP P84131_GEOSE P84131 1 ;PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR ; 2 ? 2 PDB 3U6L 3U6L 2 ? ? ? 3 PDB 3U6L 3U6L 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U6L A 1 ? 273 ? P84131 2 ? 274 ? 2 274 2 2 3U6L B 1 ? 15 ? 3U6L 2 ? 16 ? 2 16 3 3 3U6L C 1 ? 15 ? 3U6L 1 ? 15 ? 1 15 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3U6L CYS A 165 ? UNP P84131 GLN 166 'ENGINEERED MUTATION' 166 1 1 3U6L PRO A 221 ? UNP P84131 VAL 222 'ENGINEERED MUTATION' 222 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CX2 'DNA linking' n "2'-deoxy-5'-O-{(R)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}cytidine" ? 'C11 H19 N4 O6 P S' 366.331 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3U6L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 8K, sodium cacodylate, glycerol, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-10-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength 1 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3U6L _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.69 _reflns.d_resolution_high 1.970 _reflns.number_obs 32218 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.97 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.700 _reflns_shell.pdbx_redundancy 7.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U6L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 31124 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.190 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.69 _refine.ls_d_res_high 1.97 _refine.ls_percent_reflns_obs 96.9 _refine.ls_R_factor_obs 0.180 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.207 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.060 _refine.ls_number_reflns_R_free 1575 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 5.15370 _refine.aniso_B[2][2] -3.61940 _refine.aniso_B[3][3] -1.53430 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] -0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.36 _refine.solvent_model_param_bsol 48.27 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.240 _refine.pdbx_overall_phase_error 18.430 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1990 _refine_hist.pdbx_number_atoms_nucleic_acid 476 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 262 _refine_hist.number_atoms_total 2729 _refine_hist.d_res_high 1.97 _refine_hist.d_res_low 32.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2604 'X-RAY DIFFRACTION' ? f_angle_d 0.867 ? ? 3613 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.013 ? ? 1032 'X-RAY DIFFRACTION' ? f_chiral_restr 0.052 ? ? 399 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 389 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.9700 2.0336 2519 0.1837 92.00 0.2271 . . 121 . . . . 'X-RAY DIFFRACTION' . 2.0336 2.1063 2534 0.1680 94.00 0.1915 . . 123 . . . . 'X-RAY DIFFRACTION' . 2.1063 2.1906 2598 0.1653 95.00 0.1901 . . 151 . . . . 'X-RAY DIFFRACTION' . 2.1906 2.2903 2627 0.1662 96.00 0.2087 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.2903 2.4110 2671 0.1740 97.00 0.2158 . . 125 . . . . 'X-RAY DIFFRACTION' . 2.4110 2.5620 2665 0.1956 98.00 0.2184 . . 150 . . . . 'X-RAY DIFFRACTION' . 2.5620 2.7597 2704 0.1905 98.00 0.2464 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.7597 3.0372 2719 0.1907 98.00 0.2355 . . 159 . . . . 'X-RAY DIFFRACTION' . 3.0372 3.4763 2794 0.1789 99.00 0.2007 . . 133 . . . . 'X-RAY DIFFRACTION' . 3.4763 4.3781 2794 0.1539 99.00 0.1895 . . 152 . . . . 'X-RAY DIFFRACTION' . 4.3781 32.6891 2924 0.1849 99.00 0.1828 . . 166 . . . . # _struct.entry_id 3U6L _struct.title 'MutM set 2 CpGo' _struct.pdbx_descriptor 'Formamidopyrimidine-DNA glycosylase (E.C.3.2.2.23)/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U6L _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DNA glycosylase, DNA repair, lesion recognition, sequence context, disulfide crosslinking, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 2 ? VAL A 18 ? GLN A 3 VAL A 19 1 ? 17 HELX_P HELX_P2 2 TRP A 29 ? ASN A 31 ? TRP A 30 ASN A 32 5 ? 3 HELX_P HELX_P3 3 ASP A 38 ? ILE A 47 ? ASP A 39 ILE A 48 1 ? 10 HELX_P HELX_P4 4 GLU A 122 ? ARG A 127 ? GLU A 123 ARG A 128 5 ? 6 HELX_P HELX_P5 5 SER A 143 ? THR A 154 ? SER A 144 THR A 155 1 ? 12 HELX_P HELX_P6 6 SER A 157 ? LEU A 163 ? SER A 158 LEU A 164 1 ? 7 HELX_P HELX_P7 7 GLY A 172 ? GLY A 184 ? GLY A 173 GLY A 185 1 ? 13 HELX_P HELX_P8 8 PRO A 190 ? LEU A 194 ? PRO A 191 LEU A 195 5 ? 5 HELX_P HELX_P9 9 SER A 195 ? MET A 215 ? SER A 196 MET A 216 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 268 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 269 A ZN 300 1_555 ? ? ? ? ? ? ? 2.307 ? metalc2 metalc ? ? A CYS 271 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 272 A ZN 300 1_555 ? ? ? ? ? ? ? 2.327 ? metalc3 metalc ? ? A CYS 251 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 252 A ZN 300 1_555 ? ? ? ? ? ? ? 2.354 ? metalc4 metalc ? ? A CYS 248 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 249 A ZN 300 1_555 ? ? ? ? ? ? ? 2.401 ? covale1 covale ? ? C DC 8 "O3'" ? ? ? 1_555 C 8OG 9 P ? ? C DC 8 C 8OG 9 1_555 ? ? ? ? ? ? ? 1.606 ? covale2 covale ? ? C 8OG 9 "O3'" ? ? ? 1_555 C DG 10 P ? ? C 8OG 9 C DG 10 1_555 ? ? ? ? ? ? ? 1.610 ? covale3 covale ? ? C DT 11 "O3'" ? ? ? 1_555 C CX2 12 P ? ? C DT 11 C CX2 12 1_555 ? ? ? ? ? ? ? 1.592 ? covale4 covale ? ? A CYS 165 SG ? ? ? 1_555 C CX2 12 S ? ? A CYS 166 C CX2 12 1_555 ? ? ? ? ? ? ? 2.019 ? hydrog1 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 15 N3 ? ? B DG 4 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 15 O2 ? ? B DG 4 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 15 N4 ? ? B DG 4 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 14 N1 ? ? B DT 5 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 14 N6 ? ? B DT 5 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 6 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 6 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C CX2 12 N3 ? ? B DG 7 C CX2 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C CX2 12 O2 ? ? B DG 7 C CX2 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C CX2 12 N4 ? ? B DG 7 C CX2 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 8 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 8 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 9 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 9 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 9 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C 8OG 9 N1 ? ? B DC 10 C 8OG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C 8OG 9 O6 ? ? B DC 10 C 8OG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C 8OG 9 N2 ? ? B DC 10 C 8OG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 11 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 11 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 11 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 12 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 12 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 12 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 13 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 13 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 13 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 35 A . ? HIS 36 A PRO 36 A ? PRO 37 A 1 -7.81 2 PRO 128 A . ? PRO 129 A PRO 129 A ? PRO 130 A 1 1.55 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 22 ? ILE A 27 ? ILE A 23 ILE A 28 A 2 THR A 93 ? PHE A 99 ? THR A 94 PHE A 100 A 3 SER A 103 ? ARG A 108 ? SER A 104 ARG A 109 A 4 ARG A 79 ? SER A 84 ? ARG A 80 SER A 85 B 1 ILE A 33 ? HIS A 35 ? ILE A 34 HIS A 36 B 2 THR A 115 ? ALA A 120 ? THR A 116 ALA A 121 B 3 ASP A 68 ? HIS A 73 ? ASP A 69 HIS A 74 B 4 PHE A 60 ? LEU A 64 ? PHE A 61 LEU A 65 B 5 GLY A 53 ? ARG A 57 ? GLY A 54 ARG A 58 C 1 GLU A 256 ? VAL A 260 ? GLU A 257 VAL A 261 C 2 ARG A 263 ? TYR A 267 ? ARG A 264 TYR A 268 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 23 ? N GLU A 24 O CYS A 98 ? O CYS A 99 A 2 3 N PHE A 97 ? N PHE A 98 O LEU A 105 ? O LEU A 106 A 3 4 O ARG A 106 ? O ARG A 107 N ALA A 81 ? N ALA A 82 B 1 2 N ARG A 34 ? N ARG A 35 O MET A 116 ? O MET A 117 B 2 3 O HIS A 117 ? O HIS A 118 N ILE A 71 ? N ILE A 72 B 3 4 O LEU A 70 ? O LEU A 71 N PHE A 63 ? N PHE A 64 B 4 5 O LYS A 62 ? O LYS A 63 N GLU A 55 ? N GLU A 56 C 1 2 N THR A 258 ? N THR A 259 O THR A 265 ? O THR A 266 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 248 ? CYS A 249 . ? 1_555 ? 2 AC1 4 CYS A 251 ? CYS A 252 . ? 1_555 ? 3 AC1 4 CYS A 268 ? CYS A 269 . ? 1_555 ? 4 AC1 4 CYS A 271 ? CYS A 272 . ? 1_555 ? # _database_PDB_matrix.entry_id 3U6L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3U6L _atom_sites.fract_transf_matrix[1][1] 0.022130 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010690 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009556 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 2 2 PRO PRO A . n A 1 2 GLN 2 3 3 GLN GLN A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 GLU 5 6 6 GLU GLU A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 GLU 7 8 8 GLU GLU A . n A 1 8 THR 8 9 9 THR THR A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 ARG 10 11 11 ARG ARG A . n A 1 11 ARG 11 12 12 ARG ARG A . n A 1 12 THR 12 13 13 THR THR A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 PRO 15 16 16 PRO PRO A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 ILE 17 18 18 ILE ILE A . n A 1 18 VAL 18 19 19 VAL VAL A . n A 1 19 GLY 19 20 20 GLY GLY A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 THR 21 22 22 THR THR A . n A 1 22 ILE 22 23 23 ILE ILE A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 ASP 24 25 25 ASP ASP A . n A 1 25 VAL 25 26 26 VAL VAL A . n A 1 26 ARG 26 27 27 ARG ARG A . n A 1 27 ILE 27 28 28 ILE ILE A . n A 1 28 PHE 28 29 29 PHE PHE A . n A 1 29 TRP 29 30 30 TRP TRP A . n A 1 30 PRO 30 31 31 PRO PRO A . n A 1 31 ASN 31 32 32 ASN ASN A . n A 1 32 ILE 32 33 33 ILE ILE A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 ARG 34 35 35 ARG ARG A . n A 1 35 HIS 35 36 36 HIS HIS A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 ARG 37 38 38 ARG ARG A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 SER 39 40 40 SER SER A . n A 1 40 GLU 40 41 41 GLU GLU A . n A 1 41 ALA 41 42 42 ALA ALA A . n A 1 42 PHE 42 43 43 PHE PHE A . n A 1 43 ALA 43 44 44 ALA ALA A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 ARG 45 46 46 ARG ARG A . n A 1 46 MET 46 47 47 MET MET A . n A 1 47 ILE 47 48 48 ILE ILE A . n A 1 48 GLY 48 49 49 GLY GLY A . n A 1 49 GLN 49 50 50 GLN GLN A . n A 1 50 THR 50 51 51 THR THR A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 ARG 52 53 53 ARG ARG A . n A 1 53 GLY 53 54 54 GLY GLY A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 GLU 55 56 56 GLU GLU A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 ARG 57 58 58 ARG ARG A . n A 1 58 GLY 58 59 59 GLY GLY A . n A 1 59 LYS 59 60 60 LYS LYS A . n A 1 60 PHE 60 61 61 PHE PHE A . n A 1 61 LEU 61 62 62 LEU LEU A . n A 1 62 LYS 62 63 63 LYS LYS A . n A 1 63 PHE 63 64 64 PHE PHE A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 LEU 65 66 66 LEU LEU A . n A 1 66 ASP 66 67 67 ASP ASP A . n A 1 67 ARG 67 68 68 ARG ARG A . n A 1 68 ASP 68 69 69 ASP ASP A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 LEU 70 71 71 LEU LEU A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 SER 72 73 73 SER SER A . n A 1 73 HIS 73 74 74 HIS HIS A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 ARG 75 76 76 ARG ARG A . n A 1 76 MET 76 77 77 MET MET A . n A 1 77 GLU 77 78 78 GLU GLU A . n A 1 78 GLY 78 79 79 GLY GLY A . n A 1 79 ARG 79 80 80 ARG ARG A . n A 1 80 TYR 80 81 81 TYR TYR A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 VAL 82 83 83 VAL VAL A . n A 1 83 ALA 83 84 84 ALA ALA A . n A 1 84 SER 84 85 85 SER SER A . n A 1 85 ALA 85 86 86 ALA ALA A . n A 1 86 LEU 86 87 87 LEU LEU A . n A 1 87 GLU 87 88 88 GLU GLU A . n A 1 88 PRO 88 89 89 PRO PRO A . n A 1 89 LEU 89 90 90 LEU LEU A . n A 1 90 GLU 90 91 91 GLU GLU A . n A 1 91 PRO 91 92 92 PRO PRO A . n A 1 92 HIS 92 93 93 HIS HIS A . n A 1 93 THR 93 94 94 THR THR A . n A 1 94 HIS 94 95 95 HIS HIS A . n A 1 95 VAL 95 96 96 VAL VAL A . n A 1 96 VAL 96 97 97 VAL VAL A . n A 1 97 PHE 97 98 98 PHE PHE A . n A 1 98 CYS 98 99 99 CYS CYS A . n A 1 99 PHE 99 100 100 PHE PHE A . n A 1 100 THR 100 101 101 THR THR A . n A 1 101 ASP 101 102 102 ASP ASP A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 SER 103 104 104 SER SER A . n A 1 104 GLU 104 105 105 GLU GLU A . n A 1 105 LEU 105 106 106 LEU LEU A . n A 1 106 ARG 106 107 107 ARG ARG A . n A 1 107 TYR 107 108 108 TYR TYR A . n A 1 108 ARG 108 109 109 ARG ARG A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 VAL 110 111 111 VAL VAL A . n A 1 111 ARG 111 112 112 ARG ARG A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 PHE 113 114 114 PHE PHE A . n A 1 114 GLY 114 115 115 GLY GLY A . n A 1 115 THR 115 116 116 THR THR A . n A 1 116 MET 116 117 117 MET MET A . n A 1 117 HIS 117 118 118 HIS HIS A . n A 1 118 VAL 118 119 119 VAL VAL A . n A 1 119 TYR 119 120 120 TYR TYR A . n A 1 120 ALA 120 121 121 ALA ALA A . n A 1 121 LYS 121 122 122 LYS LYS A . n A 1 122 GLU 122 123 123 GLU GLU A . n A 1 123 GLU 123 124 124 GLU GLU A . n A 1 124 ALA 124 125 125 ALA ALA A . n A 1 125 ASP 125 126 126 ASP ASP A . n A 1 126 ARG 126 127 127 ARG ARG A . n A 1 127 ARG 127 128 128 ARG ARG A . n A 1 128 PRO 128 129 129 PRO PRO A . n A 1 129 PRO 129 130 130 PRO PRO A . n A 1 130 LEU 130 131 131 LEU LEU A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 GLU 132 133 133 GLU GLU A . n A 1 133 LEU 133 134 134 LEU LEU A . n A 1 134 GLY 134 135 135 GLY GLY A . n A 1 135 PRO 135 136 136 PRO PRO A . n A 1 136 GLU 136 137 137 GLU GLU A . n A 1 137 PRO 137 138 138 PRO PRO A . n A 1 138 LEU 138 139 139 LEU LEU A . n A 1 139 SER 139 140 140 SER SER A . n A 1 140 PRO 140 141 141 PRO PRO A . n A 1 141 ALA 141 142 142 ALA ALA A . n A 1 142 PHE 142 143 143 PHE PHE A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 PRO 144 145 145 PRO PRO A . n A 1 145 ALA 145 146 146 ALA ALA A . n A 1 146 VAL 146 147 147 VAL VAL A . n A 1 147 LEU 147 148 148 LEU LEU A . n A 1 148 ALA 148 149 149 ALA ALA A . n A 1 149 GLU 149 150 150 GLU GLU A . n A 1 150 ARG 150 151 151 ARG ARG A . n A 1 151 ALA 151 152 152 ALA ALA A . n A 1 152 VAL 152 153 153 VAL VAL A . n A 1 153 LYS 153 154 154 LYS LYS A . n A 1 154 THR 154 155 155 THR THR A . n A 1 155 LYS 155 156 156 LYS LYS A . n A 1 156 ARG 156 157 157 ARG ARG A . n A 1 157 SER 157 158 158 SER SER A . n A 1 158 VAL 158 159 159 VAL VAL A . n A 1 159 LYS 159 160 160 LYS LYS A . n A 1 160 ALA 160 161 161 ALA ALA A . n A 1 161 LEU 161 162 162 LEU LEU A . n A 1 162 LEU 162 163 163 LEU LEU A . n A 1 163 LEU 163 164 164 LEU LEU A . n A 1 164 ASP 164 165 165 ASP ASP A . n A 1 165 CYS 165 166 166 CYS CYS A . n A 1 166 THR 166 167 167 THR THR A . n A 1 167 VAL 167 168 168 VAL VAL A . n A 1 168 VAL 168 169 169 VAL VAL A . n A 1 169 ALA 169 170 170 ALA ALA A . n A 1 170 GLY 170 171 171 GLY GLY A . n A 1 171 PHE 171 172 172 PHE PHE A . n A 1 172 GLY 172 173 173 GLY GLY A . n A 1 173 ASN 173 174 174 ASN ASN A . n A 1 174 ILE 174 175 175 ILE ILE A . n A 1 175 TYR 175 176 176 TYR TYR A . n A 1 176 VAL 176 177 177 VAL VAL A . n A 1 177 ASP 177 178 178 ASP ASP A . n A 1 178 GLU 178 179 179 GLU GLU A . n A 1 179 SER 179 180 180 SER SER A . n A 1 180 LEU 180 181 181 LEU LEU A . n A 1 181 PHE 181 182 182 PHE PHE A . n A 1 182 ARG 182 183 183 ARG ARG A . n A 1 183 ALA 183 184 184 ALA ALA A . n A 1 184 GLY 184 185 185 GLY GLY A . n A 1 185 ILE 185 186 186 ILE ILE A . n A 1 186 LEU 186 187 187 LEU LEU A . n A 1 187 PRO 187 188 188 PRO PRO A . n A 1 188 GLY 188 189 189 GLY GLY A . n A 1 189 ARG 189 190 190 ARG ARG A . n A 1 190 PRO 190 191 191 PRO PRO A . n A 1 191 ALA 191 192 192 ALA ALA A . n A 1 192 ALA 192 193 193 ALA ALA A . n A 1 193 SER 193 194 194 SER SER A . n A 1 194 LEU 194 195 195 LEU LEU A . n A 1 195 SER 195 196 196 SER SER A . n A 1 196 SER 196 197 197 SER SER A . n A 1 197 LYS 197 198 198 LYS LYS A . n A 1 198 GLU 198 199 199 GLU GLU A . n A 1 199 ILE 199 200 200 ILE ILE A . n A 1 200 GLU 200 201 201 GLU GLU A . n A 1 201 ARG 201 202 202 ARG ARG A . n A 1 202 LEU 202 203 203 LEU LEU A . n A 1 203 HIS 203 204 204 HIS HIS A . n A 1 204 GLU 204 205 205 GLU GLU A . n A 1 205 GLU 205 206 206 GLU GLU A . n A 1 206 MET 206 207 207 MET MET A . n A 1 207 VAL 207 208 208 VAL VAL A . n A 1 208 ALA 208 209 209 ALA ALA A . n A 1 209 THR 209 210 210 THR THR A . n A 1 210 ILE 210 211 211 ILE ILE A . n A 1 211 GLY 211 212 212 GLY GLY A . n A 1 212 GLU 212 213 213 GLU GLU A . n A 1 213 ALA 213 214 214 ALA ALA A . n A 1 214 VAL 214 215 215 VAL VAL A . n A 1 215 MET 215 216 216 MET MET A . n A 1 216 LYS 216 217 ? ? ? A . n A 1 217 GLY 217 218 ? ? ? A . n A 1 218 GLY 218 219 ? ? ? A . n A 1 219 SER 219 220 ? ? ? A . n A 1 220 THR 220 221 ? ? ? A . n A 1 221 PRO 221 222 ? ? ? A . n A 1 222 ARG 222 223 ? ? ? A . n A 1 223 THR 223 224 ? ? ? A . n A 1 224 TYR 224 225 ? ? ? A . n A 1 225 VAL 225 226 ? ? ? A . n A 1 226 ASN 226 227 ? ? ? A . n A 1 227 THR 227 228 ? ? ? A . n A 1 228 GLN 228 229 ? ? ? A . n A 1 229 GLY 229 230 ? ? ? A . n A 1 230 GLU 230 231 ? ? ? A . n A 1 231 ALA 231 232 ? ? ? A . n A 1 232 GLY 232 233 ? ? ? A . n A 1 233 THR 233 234 ? ? ? A . n A 1 234 PHE 234 235 ? ? ? A . n A 1 235 GLN 235 236 ? ? ? A . n A 1 236 HIS 236 237 ? ? ? A . n A 1 237 HIS 237 238 238 HIS HIS A . n A 1 238 LEU 238 239 239 LEU LEU A . n A 1 239 TYR 239 240 240 TYR TYR A . n A 1 240 VAL 240 241 241 VAL VAL A . n A 1 241 TYR 241 242 242 TYR TYR A . n A 1 242 GLY 242 243 243 GLY GLY A . n A 1 243 ARG 243 244 244 ARG ARG A . n A 1 244 GLN 244 245 245 GLN GLN A . n A 1 245 GLY 245 246 246 GLY GLY A . n A 1 246 ASN 246 247 247 ASN ASN A . n A 1 247 PRO 247 248 248 PRO PRO A . n A 1 248 CYS 248 249 249 CYS CYS A . n A 1 249 LYS 249 250 250 LYS LYS A . n A 1 250 ARG 250 251 251 ARG ARG A . n A 1 251 CYS 251 252 252 CYS CYS A . n A 1 252 GLY 252 253 253 GLY GLY A . n A 1 253 THR 253 254 254 THR THR A . n A 1 254 PRO 254 255 255 PRO PRO A . n A 1 255 ILE 255 256 256 ILE ILE A . n A 1 256 GLU 256 257 257 GLU GLU A . n A 1 257 LYS 257 258 258 LYS LYS A . n A 1 258 THR 258 259 259 THR THR A . n A 1 259 VAL 259 260 260 VAL VAL A . n A 1 260 VAL 260 261 261 VAL VAL A . n A 1 261 ALA 261 262 262 ALA ALA A . n A 1 262 GLY 262 263 263 GLY GLY A . n A 1 263 ARG 263 264 264 ARG ARG A . n A 1 264 GLY 264 265 265 GLY GLY A . n A 1 265 THR 265 266 266 THR THR A . n A 1 266 HIS 266 267 267 HIS HIS A . n A 1 267 TYR 267 268 268 TYR TYR A . n A 1 268 CYS 268 269 269 CYS CYS A . n A 1 269 PRO 269 270 270 PRO PRO A . n A 1 270 ARG 270 271 271 ARG ARG A . n A 1 271 CYS 271 272 272 CYS CYS A . n A 1 272 GLN 272 273 273 GLN GLN A . n A 1 273 ARG 273 274 274 ARG ARG A . n B 2 1 DA 1 2 ? ? ? B . n B 2 2 DG 2 3 3 DG DG B . n B 2 3 DG 3 4 4 DG DG B . n B 2 4 DT 4 5 5 DT DT B . n B 2 5 DA 5 6 6 DA DA B . n B 2 6 DG 6 7 7 DG DG B . n B 2 7 DA 7 8 8 DA DA B . n B 2 8 DC 8 9 9 DC DC B . n B 2 9 DC 9 10 10 DC DC B . n B 2 10 DG 10 11 11 DG DG B . n B 2 11 DG 11 12 12 DG DG B . n B 2 12 DG 12 13 13 DG DG B . n B 2 13 DA 13 14 14 DA DA B . n B 2 14 DC 14 15 15 DC DC B . n B 2 15 DG 15 16 ? ? ? B . n B 2 16 DC 16 17 ? ? ? B . n C 3 1 DT 1 1 ? ? ? C . n C 3 2 DG 2 2 ? ? ? C . n C 3 3 DC 3 3 ? ? ? C . n C 3 4 DG 4 4 ? ? ? C . n C 3 5 DT 5 5 ? ? ? C . n C 3 6 DC 6 6 5 DC DC C . n C 3 7 DC 7 7 6 DC DC C . n C 3 8 DC 8 8 7 DC DC C . n C 3 9 8OG 9 9 8 8OG 8OG C . n C 3 10 DG 10 10 9 DG DG C . n C 3 11 DT 11 11 10 DT DT C . n C 3 12 CX2 12 12 11 CX2 CX2 C . n C 3 13 DT 13 13 12 DT DT C . n C 3 14 DA 14 14 13 DA DA C . n C 3 15 DC 15 15 14 DC DC C . n C 3 16 DC 16 16 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 300 300 ZN ZN A . E 5 HOH 1 1 1 HOH HOH A . E 5 HOH 2 275 275 HOH HOH A . E 5 HOH 3 276 276 HOH HOH A . E 5 HOH 4 277 277 HOH HOH A . E 5 HOH 5 278 278 HOH HOH A . E 5 HOH 6 279 279 HOH HOH A . E 5 HOH 7 280 280 HOH HOH A . E 5 HOH 8 281 281 HOH HOH A . E 5 HOH 9 282 282 HOH HOH A . E 5 HOH 10 283 283 HOH HOH A . E 5 HOH 11 284 284 HOH HOH A . E 5 HOH 12 285 285 HOH HOH A . E 5 HOH 13 286 286 HOH HOH A . E 5 HOH 14 287 287 HOH HOH A . E 5 HOH 15 288 288 HOH HOH A . E 5 HOH 16 289 289 HOH HOH A . E 5 HOH 17 290 290 HOH HOH A . E 5 HOH 18 291 291 HOH HOH A . E 5 HOH 19 292 292 HOH HOH A . E 5 HOH 20 293 293 HOH HOH A . E 5 HOH 21 294 294 HOH HOH A . E 5 HOH 22 295 295 HOH HOH A . E 5 HOH 23 296 296 HOH HOH A . E 5 HOH 24 297 297 HOH HOH A . E 5 HOH 25 298 298 HOH HOH A . E 5 HOH 26 299 299 HOH HOH A . E 5 HOH 27 301 301 HOH HOH A . E 5 HOH 28 302 302 HOH HOH A . E 5 HOH 29 303 303 HOH HOH A . E 5 HOH 30 304 304 HOH HOH A . E 5 HOH 31 305 305 HOH HOH A . E 5 HOH 32 306 306 HOH HOH A . E 5 HOH 33 307 307 HOH HOH A . E 5 HOH 34 308 308 HOH HOH A . E 5 HOH 35 309 309 HOH HOH A . E 5 HOH 36 310 310 HOH HOH A . E 5 HOH 37 311 311 HOH HOH A . E 5 HOH 38 312 312 HOH HOH A . E 5 HOH 39 313 313 HOH HOH A . E 5 HOH 40 314 314 HOH HOH A . E 5 HOH 41 315 315 HOH HOH A . E 5 HOH 42 316 316 HOH HOH A . E 5 HOH 43 317 317 HOH HOH A . E 5 HOH 44 318 318 HOH HOH A . E 5 HOH 45 319 319 HOH HOH A . E 5 HOH 46 320 320 HOH HOH A . E 5 HOH 47 321 321 HOH HOH A . E 5 HOH 48 322 322 HOH HOH A . E 5 HOH 49 323 323 HOH HOH A . E 5 HOH 50 324 324 HOH HOH A . E 5 HOH 51 325 325 HOH HOH A . E 5 HOH 52 326 326 HOH HOH A . E 5 HOH 53 327 327 HOH HOH A . E 5 HOH 54 328 328 HOH HOH A . E 5 HOH 55 329 329 HOH HOH A . E 5 HOH 56 330 330 HOH HOH A . E 5 HOH 57 331 331 HOH HOH A . E 5 HOH 58 332 332 HOH HOH A . E 5 HOH 59 333 333 HOH HOH A . E 5 HOH 60 334 334 HOH HOH A . E 5 HOH 61 335 335 HOH HOH A . E 5 HOH 62 336 336 HOH HOH A . E 5 HOH 63 337 337 HOH HOH A . E 5 HOH 64 338 338 HOH HOH A . E 5 HOH 65 339 339 HOH HOH A . E 5 HOH 66 340 340 HOH HOH A . E 5 HOH 67 341 341 HOH HOH A . E 5 HOH 68 342 342 HOH HOH A . E 5 HOH 69 343 343 HOH HOH A . E 5 HOH 70 344 344 HOH HOH A . E 5 HOH 71 345 345 HOH HOH A . E 5 HOH 72 346 346 HOH HOH A . E 5 HOH 73 347 347 HOH HOH A . E 5 HOH 74 348 348 HOH HOH A . E 5 HOH 75 349 349 HOH HOH A . E 5 HOH 76 350 350 HOH HOH A . E 5 HOH 77 351 351 HOH HOH A . E 5 HOH 78 352 352 HOH HOH A . E 5 HOH 79 353 353 HOH HOH A . E 5 HOH 80 354 354 HOH HOH A . E 5 HOH 81 355 355 HOH HOH A . E 5 HOH 82 356 356 HOH HOH A . E 5 HOH 83 357 357 HOH HOH A . E 5 HOH 84 358 358 HOH HOH A . E 5 HOH 85 359 359 HOH HOH A . E 5 HOH 86 360 360 HOH HOH A . E 5 HOH 87 361 361 HOH HOH A . E 5 HOH 88 362 362 HOH HOH A . E 5 HOH 89 363 363 HOH HOH A . E 5 HOH 90 364 364 HOH HOH A . E 5 HOH 91 365 365 HOH HOH A . E 5 HOH 92 366 366 HOH HOH A . E 5 HOH 93 367 367 HOH HOH A . E 5 HOH 94 368 368 HOH HOH A . E 5 HOH 95 369 369 HOH HOH A . E 5 HOH 96 370 370 HOH HOH A . E 5 HOH 97 371 371 HOH HOH A . E 5 HOH 98 372 372 HOH HOH A . E 5 HOH 99 373 373 HOH HOH A . E 5 HOH 100 374 374 HOH HOH A . E 5 HOH 101 375 375 HOH HOH A . E 5 HOH 102 376 376 HOH HOH A . E 5 HOH 103 377 377 HOH HOH A . E 5 HOH 104 378 378 HOH HOH A . E 5 HOH 105 379 379 HOH HOH A . E 5 HOH 106 380 380 HOH HOH A . E 5 HOH 107 381 381 HOH HOH A . E 5 HOH 108 382 382 HOH HOH A . E 5 HOH 109 383 383 HOH HOH A . E 5 HOH 110 384 384 HOH HOH A . E 5 HOH 111 385 385 HOH HOH A . E 5 HOH 112 386 386 HOH HOH A . E 5 HOH 113 387 387 HOH HOH A . E 5 HOH 114 388 388 HOH HOH A . E 5 HOH 115 389 389 HOH HOH A . E 5 HOH 116 390 390 HOH HOH A . E 5 HOH 117 391 391 HOH HOH A . E 5 HOH 118 392 392 HOH HOH A . E 5 HOH 119 393 393 HOH HOH A . E 5 HOH 120 394 394 HOH HOH A . E 5 HOH 121 395 395 HOH HOH A . E 5 HOH 122 396 396 HOH HOH A . E 5 HOH 123 397 397 HOH HOH A . E 5 HOH 124 398 398 HOH HOH A . E 5 HOH 125 399 399 HOH HOH A . E 5 HOH 126 400 400 HOH HOH A . E 5 HOH 127 401 401 HOH HOH A . E 5 HOH 128 402 402 HOH HOH A . E 5 HOH 129 403 403 HOH HOH A . E 5 HOH 130 404 404 HOH HOH A . E 5 HOH 131 405 405 HOH HOH A . E 5 HOH 132 406 406 HOH HOH A . E 5 HOH 133 407 407 HOH HOH A . E 5 HOH 134 408 408 HOH HOH A . E 5 HOH 135 409 409 HOH HOH A . E 5 HOH 136 410 410 HOH HOH A . E 5 HOH 137 411 411 HOH HOH A . E 5 HOH 138 412 412 HOH HOH A . E 5 HOH 139 413 413 HOH HOH A . E 5 HOH 140 414 414 HOH HOH A . E 5 HOH 141 415 415 HOH HOH A . E 5 HOH 142 416 416 HOH HOH A . E 5 HOH 143 417 417 HOH HOH A . E 5 HOH 144 418 418 HOH HOH A . E 5 HOH 145 419 419 HOH HOH A . E 5 HOH 146 420 420 HOH HOH A . E 5 HOH 147 421 421 HOH HOH A . E 5 HOH 148 422 422 HOH HOH A . E 5 HOH 149 423 423 HOH HOH A . E 5 HOH 150 424 424 HOH HOH A . E 5 HOH 151 425 425 HOH HOH A . E 5 HOH 152 426 426 HOH HOH A . E 5 HOH 153 427 427 HOH HOH A . E 5 HOH 154 428 428 HOH HOH A . E 5 HOH 155 429 429 HOH HOH A . E 5 HOH 156 430 430 HOH HOH A . E 5 HOH 157 431 431 HOH HOH A . E 5 HOH 158 432 432 HOH HOH A . E 5 HOH 159 433 433 HOH HOH A . E 5 HOH 160 434 434 HOH HOH A . E 5 HOH 161 435 435 HOH HOH A . E 5 HOH 162 436 436 HOH HOH A . E 5 HOH 163 437 437 HOH HOH A . E 5 HOH 164 438 438 HOH HOH A . E 5 HOH 165 439 439 HOH HOH A . E 5 HOH 166 440 440 HOH HOH A . E 5 HOH 167 441 441 HOH HOH A . E 5 HOH 168 442 442 HOH HOH A . E 5 HOH 169 443 443 HOH HOH A . E 5 HOH 170 444 444 HOH HOH A . E 5 HOH 171 445 445 HOH HOH A . E 5 HOH 172 446 446 HOH HOH A . E 5 HOH 173 447 447 HOH HOH A . E 5 HOH 174 448 448 HOH HOH A . E 5 HOH 175 449 449 HOH HOH A . E 5 HOH 176 450 450 HOH HOH A . E 5 HOH 177 451 451 HOH HOH A . E 5 HOH 178 452 452 HOH HOH A . E 5 HOH 179 453 453 HOH HOH A . E 5 HOH 180 454 454 HOH HOH A . E 5 HOH 181 455 455 HOH HOH A . E 5 HOH 182 456 456 HOH HOH A . E 5 HOH 183 457 457 HOH HOH A . E 5 HOH 184 458 458 HOH HOH A . E 5 HOH 185 459 459 HOH HOH A . E 5 HOH 186 460 460 HOH HOH A . E 5 HOH 187 461 461 HOH HOH A . E 5 HOH 188 462 462 HOH HOH A . E 5 HOH 189 463 463 HOH HOH A . E 5 HOH 190 464 464 HOH HOH A . E 5 HOH 191 465 465 HOH HOH A . E 5 HOH 192 466 466 HOH HOH A . E 5 HOH 193 467 467 HOH HOH A . E 5 HOH 194 468 468 HOH HOH A . E 5 HOH 195 469 469 HOH HOH A . E 5 HOH 196 470 470 HOH HOH A . E 5 HOH 197 471 471 HOH HOH A . E 5 HOH 198 472 472 HOH HOH A . E 5 HOH 199 473 473 HOH HOH A . E 5 HOH 200 474 474 HOH HOH A . E 5 HOH 201 475 475 HOH HOH A . E 5 HOH 202 476 476 HOH HOH A . E 5 HOH 203 477 477 HOH HOH A . E 5 HOH 204 478 478 HOH HOH A . E 5 HOH 205 479 479 HOH HOH A . E 5 HOH 206 480 480 HOH HOH A . E 5 HOH 207 481 481 HOH HOH A . E 5 HOH 208 482 482 HOH HOH A . E 5 HOH 209 483 483 HOH HOH A . E 5 HOH 210 484 484 HOH HOH A . E 5 HOH 211 485 485 HOH HOH A . E 5 HOH 212 486 486 HOH HOH A . E 5 HOH 213 487 487 HOH HOH A . E 5 HOH 214 488 488 HOH HOH A . E 5 HOH 215 489 489 HOH HOH A . E 5 HOH 216 490 490 HOH HOH A . E 5 HOH 217 491 491 HOH HOH A . E 5 HOH 218 492 492 HOH HOH A . E 5 HOH 219 493 493 HOH HOH A . E 5 HOH 220 494 494 HOH HOH A . E 5 HOH 221 495 495 HOH HOH A . E 5 HOH 222 496 496 HOH HOH A . E 5 HOH 223 497 497 HOH HOH A . E 5 HOH 224 498 498 HOH HOH A . E 5 HOH 225 499 499 HOH HOH A . E 5 HOH 226 500 500 HOH HOH A . E 5 HOH 227 501 501 HOH HOH A . E 5 HOH 228 502 502 HOH HOH A . E 5 HOH 229 503 503 HOH HOH A . E 5 HOH 230 504 504 HOH HOH A . E 5 HOH 231 505 505 HOH HOH A . E 5 HOH 232 506 506 HOH HOH A . E 5 HOH 233 507 507 HOH HOH A . E 5 HOH 234 508 508 HOH HOH A . E 5 HOH 235 509 509 HOH HOH A . E 5 HOH 236 510 510 HOH HOH A . E 5 HOH 237 511 511 HOH HOH A . E 5 HOH 238 512 512 HOH HOH A . E 5 HOH 239 513 513 HOH HOH A . F 5 HOH 1 83 83 HOH HOH B . F 5 HOH 2 107 107 HOH HOH B . F 5 HOH 3 113 113 HOH HOH B . F 5 HOH 4 121 121 HOH HOH B . F 5 HOH 5 129 129 HOH HOH B . F 5 HOH 6 142 142 HOH HOH B . F 5 HOH 7 148 148 HOH HOH B . F 5 HOH 8 160 160 HOH HOH B . F 5 HOH 9 176 176 HOH HOH B . F 5 HOH 10 209 209 HOH HOH B . F 5 HOH 11 233 233 HOH HOH B . F 5 HOH 12 241 241 HOH HOH B . F 5 HOH 13 249 249 HOH HOH B . G 5 HOH 1 17 16 HOH HOH C . G 5 HOH 2 33 33 HOH HOH C . G 5 HOH 3 69 69 HOH HOH C . G 5 HOH 4 97 97 HOH HOH C . G 5 HOH 5 161 161 HOH HOH C . G 5 HOH 6 206 206 HOH HOH C . G 5 HOH 7 207 207 HOH HOH C . G 5 HOH 8 243 243 HOH HOH C . G 5 HOH 9 244 244 HOH HOH C . G 5 HOH 10 261 261 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C 8OG 9 C 8OG 9 ? DG ? 2 C CX2 12 C CX2 12 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3660 ? 1 MORE -16 ? 1 'SSA (A^2)' 14580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 268 ? A CYS 269 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 271 ? A CYS 272 ? 1_555 118.4 ? 2 SG ? A CYS 268 ? A CYS 269 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 251 ? A CYS 252 ? 1_555 96.1 ? 3 SG ? A CYS 271 ? A CYS 272 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 251 ? A CYS 252 ? 1_555 111.1 ? 4 SG ? A CYS 268 ? A CYS 269 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 248 ? A CYS 249 ? 1_555 111.9 ? 5 SG ? A CYS 271 ? A CYS 272 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 248 ? A CYS 249 ? 1_555 108.6 ? 6 SG ? A CYS 251 ? A CYS 252 ? 1_555 ZN ? D ZN . ? A ZN 300 ? 1_555 SG ? A CYS 248 ? A CYS 249 ? 1_555 110.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2017-01-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 13.8055 -4.1971 17.2057 0.0578 0.1416 0.1079 0.0124 -0.0045 -0.0490 -0.1975 1.2046 1.1292 0.1720 0.0660 1.0705 0.0008 -0.0490 0.0349 -0.0091 -0.1516 0.1191 -0.0526 -0.1008 0.1271 'X-RAY DIFFRACTION' 2 ? refined 6.0691 -12.6013 28.9502 0.4045 0.3834 0.4116 0.0300 0.1626 0.0125 3.8659 7.6107 2.5548 -3.3585 -1.1906 -2.0237 -0.4348 -0.7986 -0.4914 1.4110 0.7080 1.2512 -0.1941 0.2155 -0.1460 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain B or chain C' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C1'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 15 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N1 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 15 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 2.762 _pdbx_validate_rmsd_bond.bond_target_value 1.488 _pdbx_validate_rmsd_bond.bond_deviation 1.274 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 110.79 108.30 2.49 0.30 N 2 1 N1 B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 90.49 112.60 -22.11 1.90 N 3 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 88.51 108.00 -19.49 0.70 N 4 1 C6 B DC 15 ? ? N1 B DC 15 ? ? "C1'" B DC 15 ? ? 130.86 120.80 10.06 1.20 N 5 1 C2 B DC 15 ? ? N1 B DC 15 ? ? "C1'" B DC 15 ? ? 106.76 118.80 -12.04 1.10 N 6 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 110.11 108.30 1.81 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 66 ? ? -107.49 -154.42 2 1 ARG A 76 ? ? 49.25 -140.42 3 1 ASP A 110 ? ? -176.49 104.34 4 1 GLU A 133 ? ? 81.17 -8.56 5 1 VAL A 241 ? ? -131.35 -37.24 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 15 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.135 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 217 ? A LYS 216 2 1 Y 1 A GLY 218 ? A GLY 217 3 1 Y 1 A GLY 219 ? A GLY 218 4 1 Y 1 A SER 220 ? A SER 219 5 1 Y 1 A THR 221 ? A THR 220 6 1 Y 1 A PRO 222 ? A PRO 221 7 1 Y 1 A ARG 223 ? A ARG 222 8 1 Y 1 A THR 224 ? A THR 223 9 1 Y 1 A TYR 225 ? A TYR 224 10 1 Y 1 A VAL 226 ? A VAL 225 11 1 Y 1 A ASN 227 ? A ASN 226 12 1 Y 1 A THR 228 ? A THR 227 13 1 Y 1 A GLN 229 ? A GLN 228 14 1 Y 1 A GLY 230 ? A GLY 229 15 1 Y 1 A GLU 231 ? A GLU 230 16 1 Y 1 A ALA 232 ? A ALA 231 17 1 Y 1 A GLY 233 ? A GLY 232 18 1 Y 1 A THR 234 ? A THR 233 19 1 Y 1 A PHE 235 ? A PHE 234 20 1 Y 1 A GLN 236 ? A GLN 235 21 1 Y 1 A HIS 237 ? A HIS 236 22 1 Y 1 B DA 2 ? B DA 1 23 1 Y 1 B DG 16 ? B DG 15 24 1 Y 1 B DC 17 ? B DC 16 25 1 Y 1 C DT 1 ? C DT 1 26 1 Y 1 C DG 2 ? C DG 2 27 1 Y 1 C DC 3 ? C DC 3 28 1 Y 1 C DG 4 ? C DG 4 29 1 Y 1 C DT 5 ? C DT 5 30 1 Y 1 C DC 16 ? C DC 16 # _ndb_struct_conf_na.entry_id 3U6L _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 3 1_555 C DC 15 1_555 0.683 0.126 0.210 2.647 -16.386 14.028 1 B_DG4:DC15_C B 4 ? C 15 ? 19 1 1 B DT 4 1_555 C DA 14 1_555 0.970 -0.093 0.467 10.714 -18.725 11.413 2 B_DT5:DA14_C B 5 ? C 14 ? 20 1 1 B DA 5 1_555 C DT 13 1_555 0.179 -0.047 0.214 2.511 -17.360 5.223 3 B_DA6:DT13_C B 6 ? C 13 ? 20 1 1 B DG 6 1_555 C CX2 12 1_555 -0.169 -0.281 -0.102 -6.454 -22.706 -0.343 4 B_DG7:CX212_C B 7 ? C 12 ? 19 1 1 B DA 7 1_555 C DT 11 1_555 0.290 -0.113 0.063 -10.112 -6.431 4.969 5 B_DA8:DT11_C B 8 ? C 11 ? 20 1 1 B DC 8 1_555 C DG 10 1_555 0.270 -0.087 -0.305 14.863 -0.715 0.715 6 B_DC9:DG10_C B 9 ? C 10 ? 19 1 1 B DC 9 1_555 C 8OG 9 1_555 0.336 -0.181 0.506 -24.613 0.597 1.285 7 B_DC10:8OG9_C B 10 ? C 9 ? 19 1 1 B DG 10 1_555 C DC 8 1_555 -0.216 -0.171 0.242 10.085 7.636 -0.584 8 B_DG11:DC8_C B 11 ? C 8 ? 19 1 1 B DG 11 1_555 C DC 7 1_555 0.101 0.053 0.681 15.099 -14.751 -0.099 9 B_DG12:DC7_C B 12 ? C 7 ? 19 1 1 B DG 12 1_555 C DC 6 1_555 0.353 0.272 -0.203 5.863 -12.811 -4.226 10 B_DG13:DC6_C B 13 ? C 6 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 3 1_555 C DC 15 1_555 B DT 4 1_555 C DA 14 1_555 -0.286 -0.184 3.002 1.945 7.401 30.805 -1.575 0.848 2.859 13.669 -3.591 31.719 1 BB_DG4DT5:DA14DC15_CC B 4 ? C 15 ? B 5 ? C 14 ? 1 B DT 4 1_555 C DA 14 1_555 B DA 5 1_555 C DT 13 1_555 -0.272 -0.227 3.314 4.080 2.999 33.747 -0.865 1.115 3.229 5.130 -6.979 34.113 2 BB_DT5DA6:DT13DA14_CC B 5 ? C 14 ? B 6 ? C 13 ? 1 B DA 5 1_555 C DT 13 1_555 B DG 6 1_555 C CX2 12 1_555 -0.081 0.067 3.497 -2.010 6.707 37.413 -0.811 -0.150 3.457 10.344 3.100 38.040 3 BB_DA6DG7:CX212DT13_CC B 6 ? C 13 ? B 7 ? C 12 ? 1 B DG 6 1_555 C CX2 12 1_555 B DA 7 1_555 C DT 11 1_555 0.359 -0.234 3.332 0.217 -0.817 38.431 -0.252 -0.518 3.338 -1.241 -0.329 38.440 4 BB_DG7DA8:DT11CX212_CC B 7 ? C 12 ? B 8 ? C 11 ? 1 B DA 7 1_555 C DT 11 1_555 B DC 8 1_555 C DG 10 1_555 -0.091 0.019 2.679 3.398 10.611 21.945 -2.637 1.072 2.391 25.841 -8.275 24.580 5 BB_DA8DC9:DG10DT11_CC B 8 ? C 11 ? B 9 ? C 10 ? 1 B DC 8 1_555 C DG 10 1_555 B DC 9 1_555 C 8OG 9 1_555 0.128 0.731 5.329 -3.467 48.884 21.634 -5.033 -0.557 2.883 67.451 4.784 53.299 6 BB_DC9DC10:8OG9DG10_CC B 9 ? C 10 ? B 10 ? C 9 ? 1 B DC 9 1_555 C 8OG 9 1_555 B DG 10 1_555 C DC 8 1_555 -0.269 1.695 2.700 0.571 6.854 20.377 2.031 0.930 3.089 18.699 -1.557 21.495 7 BB_DC10DG11:DC88OG9_CC B 10 ? C 9 ? B 11 ? C 8 ? 1 B DG 10 1_555 C DC 8 1_555 B DG 11 1_555 C DC 7 1_555 -1.007 1.406 3.487 -4.275 1.669 38.365 1.901 0.948 3.630 2.529 6.478 38.628 8 BB_DG11DG12:DC7DC8_CC B 11 ? C 8 ? B 12 ? C 7 ? 1 B DG 11 1_555 C DC 7 1_555 B DG 12 1_555 C DC 6 1_555 0.292 -0.108 3.535 5.941 4.052 35.048 -0.811 0.456 3.502 6.642 -9.738 35.756 9 BB_DG12DG13:DC6DC7_CC B 12 ? C 7 ? B 13 ? C 6 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH #