data_3U74 # _entry.id 3U74 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3U74 pdb_00003u74 10.2210/pdb3u74/pdb RCSB RCSB068389 ? ? WWPDB D_1000068389 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FAT . unspecified PDB 3BT1 . unspecified PDB 3BT2 . unspecified # _pdbx_database_status.entry_id 3U74 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-13 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, M.D.' 1 'Xu, X.' 2 'Yuan, C.' 3 # _citation.id primary _citation.title 'Crystal structure of the urokinase receptor in a ligand-free form.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 416 _citation.page_first 629 _citation.page_last 641 _citation.year 2012 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22285761 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.12.058 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, X.' 1 ? primary 'Gardsvoll, H.' 2 ? primary 'Yuan, C.' 3 ? primary 'Lin, L.' 4 ? primary 'Ploug, M.' 5 ? primary 'Huang, M.' 6 ? # _cell.entry_id 3U74 _cell.length_a 111.235 _cell.length_b 111.235 _cell.length_c 78.571 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U74 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Urokinase plasminogen activator surface receptor' 31455.377 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'U-PAR, uPAR, Monocyte activation antigen Mo3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTCSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN SGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFH NNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG CATASMCQHAHLGDAFSMCHIDVSCCTKSGCNHPDLDVQYRSG ; _entity_poly.pdbx_seq_one_letter_code_can ;LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTCSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN SGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFH NNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG CATASMCQHAHLGDAFSMCHIDVSCCTKSGCNHPDLDVQYRSG ; _entity_poly.pdbx_strand_id U _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ARG n 1 3 CYS n 1 4 MET n 1 5 GLN n 1 6 CYS n 1 7 LYS n 1 8 THR n 1 9 ASN n 1 10 GLY n 1 11 ASP n 1 12 CYS n 1 13 ARG n 1 14 VAL n 1 15 GLU n 1 16 GLU n 1 17 CYS n 1 18 ALA n 1 19 LEU n 1 20 GLY n 1 21 GLN n 1 22 ASP n 1 23 LEU n 1 24 CYS n 1 25 ARG n 1 26 THR n 1 27 THR n 1 28 ILE n 1 29 VAL n 1 30 ARG n 1 31 LEU n 1 32 TRP n 1 33 GLU n 1 34 GLU n 1 35 GLY n 1 36 GLU n 1 37 GLU n 1 38 LEU n 1 39 GLU n 1 40 LEU n 1 41 VAL n 1 42 GLU n 1 43 LYS n 1 44 SER n 1 45 CYS n 1 46 THR n 1 47 CYS n 1 48 SER n 1 49 GLU n 1 50 LYS n 1 51 THR n 1 52 ASN n 1 53 ARG n 1 54 THR n 1 55 LEU n 1 56 SER n 1 57 TYR n 1 58 ARG n 1 59 THR n 1 60 GLY n 1 61 LEU n 1 62 LYS n 1 63 ILE n 1 64 THR n 1 65 SER n 1 66 LEU n 1 67 THR n 1 68 GLU n 1 69 VAL n 1 70 VAL n 1 71 CYS n 1 72 GLY n 1 73 LEU n 1 74 ASP n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 GLN n 1 79 GLY n 1 80 ASN n 1 81 SER n 1 82 GLY n 1 83 ARG n 1 84 ALA n 1 85 VAL n 1 86 THR n 1 87 TYR n 1 88 SER n 1 89 ARG n 1 90 SER n 1 91 ARG n 1 92 TYR n 1 93 LEU n 1 94 GLU n 1 95 CYS n 1 96 ILE n 1 97 SER n 1 98 CYS n 1 99 GLY n 1 100 SER n 1 101 SER n 1 102 ASP n 1 103 MET n 1 104 SER n 1 105 CYS n 1 106 GLU n 1 107 ARG n 1 108 GLY n 1 109 ARG n 1 110 HIS n 1 111 GLN n 1 112 SER n 1 113 LEU n 1 114 GLN n 1 115 CYS n 1 116 ARG n 1 117 SER n 1 118 PRO n 1 119 GLU n 1 120 GLU n 1 121 GLN n 1 122 CYS n 1 123 LEU n 1 124 ASP n 1 125 VAL n 1 126 VAL n 1 127 THR n 1 128 HIS n 1 129 TRP n 1 130 ILE n 1 131 GLN n 1 132 GLU n 1 133 GLY n 1 134 GLU n 1 135 GLU n 1 136 GLY n 1 137 ARG n 1 138 PRO n 1 139 LYS n 1 140 ASP n 1 141 ASP n 1 142 ARG n 1 143 HIS n 1 144 LEU n 1 145 ARG n 1 146 GLY n 1 147 CYS n 1 148 GLY n 1 149 TYR n 1 150 LEU n 1 151 PRO n 1 152 GLY n 1 153 CYS n 1 154 PRO n 1 155 GLY n 1 156 SER n 1 157 ASN n 1 158 GLY n 1 159 PHE n 1 160 HIS n 1 161 ASN n 1 162 ASN n 1 163 ASP n 1 164 THR n 1 165 PHE n 1 166 HIS n 1 167 PHE n 1 168 LEU n 1 169 LYS n 1 170 CYS n 1 171 CYS n 1 172 ASN n 1 173 THR n 1 174 THR n 1 175 LYS n 1 176 CYS n 1 177 ASN n 1 178 GLU n 1 179 GLY n 1 180 PRO n 1 181 ILE n 1 182 LEU n 1 183 GLU n 1 184 LEU n 1 185 GLU n 1 186 ASN n 1 187 LEU n 1 188 PRO n 1 189 GLN n 1 190 ASN n 1 191 GLY n 1 192 ARG n 1 193 GLN n 1 194 CYS n 1 195 TYR n 1 196 SER n 1 197 CYS n 1 198 LYS n 1 199 GLY n 1 200 ASN n 1 201 SER n 1 202 THR n 1 203 HIS n 1 204 GLY n 1 205 CYS n 1 206 SER n 1 207 SER n 1 208 GLU n 1 209 GLU n 1 210 THR n 1 211 PHE n 1 212 LEU n 1 213 ILE n 1 214 ASP n 1 215 CYS n 1 216 ARG n 1 217 GLY n 1 218 PRO n 1 219 MET n 1 220 ASN n 1 221 GLN n 1 222 CYS n 1 223 LEU n 1 224 VAL n 1 225 ALA n 1 226 THR n 1 227 GLY n 1 228 THR n 1 229 HIS n 1 230 GLU n 1 231 PRO n 1 232 LYS n 1 233 ASN n 1 234 GLN n 1 235 SER n 1 236 TYR n 1 237 MET n 1 238 VAL n 1 239 ARG n 1 240 GLY n 1 241 CYS n 1 242 ALA n 1 243 THR n 1 244 ALA n 1 245 SER n 1 246 MET n 1 247 CYS n 1 248 GLN n 1 249 HIS n 1 250 ALA n 1 251 HIS n 1 252 LEU n 1 253 GLY n 1 254 ASP n 1 255 ALA n 1 256 PHE n 1 257 SER n 1 258 MET n 1 259 CYS n 1 260 HIS n 1 261 ILE n 1 262 ASP n 1 263 VAL n 1 264 SER n 1 265 CYS n 1 266 CYS n 1 267 THR n 1 268 LYS n 1 269 SER n 1 270 GLY n 1 271 CYS n 1 272 ASN n 1 273 HIS n 1 274 PRO n 1 275 ASP n 1 276 LEU n 1 277 ASP n 1 278 VAL n 1 279 GLN n 1 280 TYR n 1 281 ARG n 1 282 SER n 1 283 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MO3, PLAUR, UPAR' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line 'S2 Cells' _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7227 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PMT/BIP _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UPAR_HUMAN _struct_ref.pdbx_db_accession Q03405 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN SGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFH NNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYRSG ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3U74 _struct_ref_seq.pdbx_strand_id U _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 283 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q03405 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 305 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 283 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3U74 CYS U 47 ? UNP Q03405 HIS 69 'engineered mutation' 47 1 1 3U74 CYS U 259 ? UNP Q03405 ASN 281 'engineered mutation' 259 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3U74 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_percent_sol 58.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 mM HEPES, pH 7.5, 2% (w/v) PEG400, 2 M ammonium sulfate, vapor diffusion, sitting drop, temperature 295.0K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-06-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791 # _reflns.entry_id 3U74 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.39 _reflns.number_obs ? _reflns.number_all 14133 _reflns.percent_possible_obs 99.300 _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.700 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.200 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.400 2.490 93.900 0.600 ? ? 4.200 ? ? ? ? ? ? 1 2 2.490 2.590 99.400 0.484 ? ? 4.900 ? ? ? ? ? ? 1 3 2.590 2.700 100.000 0.395 ? ? 5.300 ? ? ? ? ? ? 1 4 2.700 2.850 100.000 0.284 ? ? 5.400 ? ? ? ? ? ? 1 5 2.850 3.020 100.000 0.193 ? ? 5.400 ? ? ? ? ? ? 1 6 3.020 3.260 100.000 0.156 ? ? 5.500 ? ? ? ? ? ? 1 7 3.260 3.580 100.000 0.121 ? ? 5.500 ? ? ? ? ? ? 1 8 3.580 4.100 100.000 0.101 ? ? 5.400 ? ? ? ? ? ? 1 9 4.100 5.170 100.000 0.083 ? ? 5.400 ? ? ? ? ? ? 1 10 5.170 50.000 99.400 0.061 ? ? 5.100 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U74 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14130 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.04 _refine.ls_d_res_high 2.39 _refine.ls_percent_reflns_obs 99.0 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.252 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 706 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.B_iso_mean 71.02 _refine.aniso_B[1][1] -1.61000 _refine.aniso_B[2][2] -1.61000 _refine.aniso_B[3][3] 2.41000 _refine.aniso_B[1][2] -0.80000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN' _refine.pdbx_starting_model 'PDB ENTRY 1YWH and 2FD6' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.242 _refine.overall_SU_ML 0.186 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.848 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2017 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 2081 _refine_hist.d_res_high 2.39 _refine_hist.d_res_low 33.04 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.019 ? 2104 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.008 1.968 ? 2843 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.477 5.000 ? 260 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.520 24.400 ? 100 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.467 15.000 ? 359 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.551 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.134 0.200 ? 312 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1576 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.46 _refine_ls_shell.number_reflns_R_work 888 _refine_ls_shell.R_factor_R_work 0.2810 _refine_ls_shell.percent_reflns_obs 89.60 _refine_ls_shell.R_factor_R_free 0.3020 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3U74 _struct.title 'Crystal structure of stabilized human uPAR mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U74 _struct_keywords.text 'glycosylation, HYDROLASE RECEPTOR' _struct_keywords.pdbx_keywords 'HYDROLASE RECEPTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 103 ? GLY A 108 ? MET U 103 GLY U 108 1 ? 6 HELX_P HELX_P2 2 GLU A 183 ? LEU A 187 ? GLU U 183 LEU U 187 5 ? 5 HELX_P HELX_P3 3 SER A 206 ? THR A 210 ? SER U 206 THR U 210 5 ? 5 HELX_P HELX_P4 4 ALA A 244 ? CYS A 247 ? ALA U 244 CYS U 247 5 ? 4 HELX_P HELX_P5 5 GLN A 248 ? SER A 257 ? GLN U 248 SER U 257 1 ? 10 HELX_P HELX_P6 6 HIS A 273 ? ASP A 277 ? HIS U 273 ASP U 277 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 24 SG ? ? U CYS 3 U CYS 24 1_555 ? ? ? ? ? ? ? 1.955 ? ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 12 SG ? ? U CYS 6 U CYS 12 1_555 ? ? ? ? ? ? ? 1.963 ? ? disulf3 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 45 SG ? ? U CYS 17 U CYS 45 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf4 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 259 SG ? ? U CYS 47 U CYS 259 1_555 ? ? ? ? ? ? ? 1.974 ? ? disulf5 disulf ? ? A CYS 71 SG ? ? ? 1_555 A CYS 76 SG ? ? U CYS 71 U CYS 76 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf6 disulf ? ? A CYS 95 SG ? ? ? 1_555 A CYS 122 SG ? ? U CYS 95 U CYS 122 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf7 disulf ? ? A CYS 98 SG ? ? ? 1_555 A CYS 105 SG ? ? U CYS 98 U CYS 105 1_555 ? ? ? ? ? ? ? 2.081 ? ? disulf8 disulf ? ? A CYS 115 SG ? ? ? 1_555 A CYS 147 SG ? ? U CYS 115 U CYS 147 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf9 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 170 SG ? ? U CYS 153 U CYS 170 1_555 ? ? ? ? ? ? ? 1.992 ? ? disulf10 disulf ? ? A CYS 171 SG ? ? ? 1_555 A CYS 176 SG ? ? U CYS 171 U CYS 176 1_555 ? ? ? ? ? ? ? 1.917 ? ? disulf11 disulf ? ? A CYS 194 SG ? ? ? 1_555 A CYS 222 SG ? ? U CYS 194 U CYS 222 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf12 disulf ? ? A CYS 197 SG ? ? ? 1_555 A CYS 205 SG ? ? U CYS 197 U CYS 205 1_555 ? ? ? ? ? ? ? 2.094 ? ? disulf13 disulf ? ? A CYS 215 SG ? ? ? 1_555 A CYS 241 SG ? ? U CYS 215 U CYS 241 1_555 ? ? ? ? ? ? ? 1.987 ? ? disulf14 disulf ? ? A CYS 247 SG ? ? ? 1_555 A CYS 265 SG ? ? U CYS 247 U CYS 265 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf15 disulf ? ? A CYS 266 SG ? ? ? 1_555 A CYS 271 SG ? ? U CYS 266 U CYS 271 1_555 ? ? ? ? ? ? ? 1.980 ? ? covale1 covale one ? A ASN 52 ND2 ? ? ? 1_555 B NAG . C1 ? ? U ASN 52 A NAG 1 1_555 ? ? ? ? ? ? ? 1.490 ? N-Glycosylation covale2 covale one ? A ASN 200 ND2 ? ? ? 1_555 C NAG . C1 ? ? U ASN 200 U NAG 503 1_555 ? ? ? ? ? ? ? 1.489 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.428 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 153 A . ? CYS 153 U PRO 154 A ? PRO 154 U 1 -8.33 2 SER 282 A . ? SER 282 U GLY 283 A ? GLY 283 U 1 0.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 11 ? C ? 11 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel B 10 11 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel C 8 9 ? anti-parallel C 9 10 ? anti-parallel C 10 11 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 2 ? CYS A 6 ? ARG U 2 CYS U 6 A 2 CYS A 12 ? GLU A 16 ? CYS U 12 GLU U 16 B 1 GLU A 36 ? THR A 46 ? GLU U 36 THR U 46 B 2 LEU A 23 ? GLU A 33 ? LEU U 23 GLU U 33 B 3 LYS A 62 ? CYS A 71 ? LYS U 62 CYS U 71 B 4 ARG A 53 ? THR A 59 ? ARG U 53 THR U 59 B 5 ARG A 142 ? TYR A 149 ? ARG U 142 TYR U 149 B 6 GLN A 121 ? HIS A 128 ? GLN U 121 HIS U 128 B 7 PHE A 165 ? CYS A 171 ? PHE U 165 CYS U 171 B 8 GLY A 155 ? HIS A 160 ? GLY U 155 HIS U 160 B 9 SER A 235 ? ALA A 242 ? SER U 235 ALA U 242 B 10 GLN A 189 ? GLY A 199 ? GLN U 189 GLY U 199 B 11 PHE A 211 ? ARG A 216 ? PHE U 211 ARG U 216 C 1 GLU A 36 ? THR A 46 ? GLU U 36 THR U 46 C 2 LEU A 23 ? GLU A 33 ? LEU U 23 GLU U 33 C 3 LYS A 62 ? CYS A 71 ? LYS U 62 CYS U 71 C 4 ARG A 53 ? THR A 59 ? ARG U 53 THR U 59 C 5 ARG A 142 ? TYR A 149 ? ARG U 142 TYR U 149 C 6 GLN A 121 ? HIS A 128 ? GLN U 121 HIS U 128 C 7 PHE A 165 ? CYS A 171 ? PHE U 165 CYS U 171 C 8 GLY A 155 ? HIS A 160 ? GLY U 155 HIS U 160 C 9 SER A 235 ? ALA A 242 ? SER U 235 ALA U 242 C 10 GLN A 221 ? HIS A 229 ? GLN U 221 HIS U 229 C 11 MET A 258 ? CYS A 266 ? MET U 258 CYS U 266 D 1 GLU A 94 ? SER A 97 ? GLU U 94 SER U 97 D 2 GLN A 111 ? GLN A 114 ? GLN U 111 GLN U 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 3 ? N CYS U 3 O GLU A 15 ? O GLU U 15 B 1 2 O THR A 46 ? O THR U 46 N LEU A 23 ? N LEU U 23 B 2 3 N CYS A 24 ? N CYS U 24 O CYS A 71 ? O CYS U 71 B 3 4 O LEU A 66 ? O LEU U 66 N LEU A 55 ? N LEU U 55 B 4 5 N SER A 56 ? N SER U 56 O CYS A 147 ? O CYS U 147 B 5 6 O GLY A 148 ? O GLY U 148 N GLN A 121 ? N GLN U 121 B 6 7 N VAL A 126 ? N VAL U 126 O PHE A 167 ? O PHE U 167 B 7 8 O CYS A 170 ? O CYS U 170 N GLY A 155 ? N GLY U 155 B 8 9 N HIS A 160 ? N HIS U 160 O CYS A 241 ? O CYS U 241 B 9 10 O ARG A 239 ? O ARG U 239 N CYS A 197 ? N CYS U 197 B 10 11 N ARG A 192 ? N ARG U 192 O CYS A 215 ? O CYS U 215 C 1 2 O THR A 46 ? O THR U 46 N LEU A 23 ? N LEU U 23 C 2 3 N CYS A 24 ? N CYS U 24 O CYS A 71 ? O CYS U 71 C 3 4 O LEU A 66 ? O LEU U 66 N LEU A 55 ? N LEU U 55 C 4 5 N SER A 56 ? N SER U 56 O CYS A 147 ? O CYS U 147 C 5 6 O GLY A 148 ? O GLY U 148 N GLN A 121 ? N GLN U 121 C 6 7 N VAL A 126 ? N VAL U 126 O PHE A 167 ? O PHE U 167 C 7 8 O CYS A 170 ? O CYS U 170 N GLY A 155 ? N GLY U 155 C 8 9 N HIS A 160 ? N HIS U 160 O CYS A 241 ? O CYS U 241 C 9 10 O GLY A 240 ? O GLY U 240 N LEU A 223 ? N LEU U 223 C 10 11 N THR A 226 ? N THR U 226 O ASP A 262 ? O ASP U 262 D 1 2 N CYS A 95 ? N CYS U 95 O LEU A 113 ? O LEU U 113 # _atom_sites.entry_id 3U74 _atom_sites.fract_transf_matrix[1][1] 0.008990 _atom_sites.fract_transf_matrix[1][2] 0.005190 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010381 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012727 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU U . n A 1 2 ARG 2 2 2 ARG ARG U . n A 1 3 CYS 3 3 3 CYS CYS U . n A 1 4 MET 4 4 4 MET MET U . n A 1 5 GLN 5 5 5 GLN GLN U . n A 1 6 CYS 6 6 6 CYS CYS U . n A 1 7 LYS 7 7 7 LYS LYS U . n A 1 8 THR 8 8 8 THR THR U . n A 1 9 ASN 9 9 9 ASN ASN U . n A 1 10 GLY 10 10 10 GLY GLY U . n A 1 11 ASP 11 11 11 ASP ASP U . n A 1 12 CYS 12 12 12 CYS CYS U . n A 1 13 ARG 13 13 13 ARG ARG U . n A 1 14 VAL 14 14 14 VAL VAL U . n A 1 15 GLU 15 15 15 GLU GLU U . n A 1 16 GLU 16 16 16 GLU GLU U . n A 1 17 CYS 17 17 17 CYS CYS U . n A 1 18 ALA 18 18 18 ALA ALA U . n A 1 19 LEU 19 19 19 LEU LEU U . n A 1 20 GLY 20 20 20 GLY GLY U . n A 1 21 GLN 21 21 21 GLN GLN U . n A 1 22 ASP 22 22 22 ASP ASP U . n A 1 23 LEU 23 23 23 LEU LEU U . n A 1 24 CYS 24 24 24 CYS CYS U . n A 1 25 ARG 25 25 25 ARG ARG U . n A 1 26 THR 26 26 26 THR THR U . n A 1 27 THR 27 27 27 THR THR U . n A 1 28 ILE 28 28 28 ILE ILE U . n A 1 29 VAL 29 29 29 VAL VAL U . n A 1 30 ARG 30 30 30 ARG ARG U . n A 1 31 LEU 31 31 31 LEU LEU U . n A 1 32 TRP 32 32 32 TRP TRP U . n A 1 33 GLU 33 33 33 GLU GLU U . n A 1 34 GLU 34 34 34 GLU GLU U . n A 1 35 GLY 35 35 35 GLY GLY U . n A 1 36 GLU 36 36 36 GLU GLU U . n A 1 37 GLU 37 37 37 GLU GLU U . n A 1 38 LEU 38 38 38 LEU LEU U . n A 1 39 GLU 39 39 39 GLU GLU U . n A 1 40 LEU 40 40 40 LEU LEU U . n A 1 41 VAL 41 41 41 VAL VAL U . n A 1 42 GLU 42 42 42 GLU GLU U . n A 1 43 LYS 43 43 43 LYS LYS U . n A 1 44 SER 44 44 44 SER SER U . n A 1 45 CYS 45 45 45 CYS CYS U . n A 1 46 THR 46 46 46 THR THR U . n A 1 47 CYS 47 47 47 CYS CYS U . n A 1 48 SER 48 48 48 SER SER U . n A 1 49 GLU 49 49 49 GLU GLU U . n A 1 50 LYS 50 50 50 LYS LYS U . n A 1 51 THR 51 51 51 THR THR U . n A 1 52 ASN 52 52 52 ASN ASN U . n A 1 53 ARG 53 53 53 ARG ARG U . n A 1 54 THR 54 54 54 THR THR U . n A 1 55 LEU 55 55 55 LEU LEU U . n A 1 56 SER 56 56 56 SER SER U . n A 1 57 TYR 57 57 57 TYR TYR U . n A 1 58 ARG 58 58 58 ARG ARG U . n A 1 59 THR 59 59 59 THR THR U . n A 1 60 GLY 60 60 60 GLY GLY U . n A 1 61 LEU 61 61 61 LEU LEU U . n A 1 62 LYS 62 62 62 LYS LYS U . n A 1 63 ILE 63 63 63 ILE ILE U . n A 1 64 THR 64 64 64 THR THR U . n A 1 65 SER 65 65 65 SER SER U . n A 1 66 LEU 66 66 66 LEU LEU U . n A 1 67 THR 67 67 67 THR THR U . n A 1 68 GLU 68 68 68 GLU GLU U . n A 1 69 VAL 69 69 69 VAL VAL U . n A 1 70 VAL 70 70 70 VAL VAL U . n A 1 71 CYS 71 71 71 CYS CYS U . n A 1 72 GLY 72 72 72 GLY GLY U . n A 1 73 LEU 73 73 73 LEU LEU U . n A 1 74 ASP 74 74 74 ASP ASP U . n A 1 75 LEU 75 75 75 LEU LEU U . n A 1 76 CYS 76 76 76 CYS CYS U . n A 1 77 ASN 77 77 77 ASN ASN U . n A 1 78 GLN 78 78 78 GLN GLN U . n A 1 79 GLY 79 79 79 GLY GLY U . n A 1 80 ASN 80 80 80 ASN ASN U . n A 1 81 SER 81 81 ? ? ? U . n A 1 82 GLY 82 82 ? ? ? U . n A 1 83 ARG 83 83 ? ? ? U . n A 1 84 ALA 84 84 ? ? ? U . n A 1 85 VAL 85 85 ? ? ? U . n A 1 86 THR 86 86 ? ? ? U . n A 1 87 TYR 87 87 ? ? ? U . n A 1 88 SER 88 88 ? ? ? U . n A 1 89 ARG 89 89 ? ? ? U . n A 1 90 SER 90 90 ? ? ? U . n A 1 91 ARG 91 91 91 ARG ARG U . n A 1 92 TYR 92 92 92 TYR TYR U . n A 1 93 LEU 93 93 93 LEU LEU U . n A 1 94 GLU 94 94 94 GLU GLU U . n A 1 95 CYS 95 95 95 CYS CYS U . n A 1 96 ILE 96 96 96 ILE ILE U . n A 1 97 SER 97 97 97 SER SER U . n A 1 98 CYS 98 98 98 CYS CYS U . n A 1 99 GLY 99 99 99 GLY GLY U . n A 1 100 SER 100 100 100 SER SER U . n A 1 101 SER 101 101 101 SER SER U . n A 1 102 ASP 102 102 102 ASP ASP U . n A 1 103 MET 103 103 103 MET MET U . n A 1 104 SER 104 104 104 SER SER U . n A 1 105 CYS 105 105 105 CYS CYS U . n A 1 106 GLU 106 106 106 GLU GLU U . n A 1 107 ARG 107 107 107 ARG ARG U . n A 1 108 GLY 108 108 108 GLY GLY U . n A 1 109 ARG 109 109 109 ARG ARG U . n A 1 110 HIS 110 110 110 HIS HIS U . n A 1 111 GLN 111 111 111 GLN GLN U . n A 1 112 SER 112 112 112 SER SER U . n A 1 113 LEU 113 113 113 LEU LEU U . n A 1 114 GLN 114 114 114 GLN GLN U . n A 1 115 CYS 115 115 115 CYS CYS U . n A 1 116 ARG 116 116 116 ARG ARG U . n A 1 117 SER 117 117 117 SER SER U . n A 1 118 PRO 118 118 118 PRO PRO U . n A 1 119 GLU 119 119 119 GLU GLU U . n A 1 120 GLU 120 120 120 GLU GLU U . n A 1 121 GLN 121 121 121 GLN GLN U . n A 1 122 CYS 122 122 122 CYS CYS U . n A 1 123 LEU 123 123 123 LEU LEU U . n A 1 124 ASP 124 124 124 ASP ASP U . n A 1 125 VAL 125 125 125 VAL VAL U . n A 1 126 VAL 126 126 126 VAL VAL U . n A 1 127 THR 127 127 127 THR THR U . n A 1 128 HIS 128 128 128 HIS HIS U . n A 1 129 TRP 129 129 129 TRP TRP U . n A 1 130 ILE 130 130 ? ? ? U . n A 1 131 GLN 131 131 ? ? ? U . n A 1 132 GLU 132 132 ? ? ? U . n A 1 133 GLY 133 133 ? ? ? U . n A 1 134 GLU 134 134 ? ? ? U . n A 1 135 GLU 135 135 ? ? ? U . n A 1 136 GLY 136 136 ? ? ? U . n A 1 137 ARG 137 137 ? ? ? U . n A 1 138 PRO 138 138 ? ? ? U . n A 1 139 LYS 139 139 ? ? ? U . n A 1 140 ASP 140 140 140 ASP ASP U . n A 1 141 ASP 141 141 141 ASP ASP U . n A 1 142 ARG 142 142 142 ARG ARG U . n A 1 143 HIS 143 143 143 HIS HIS U . n A 1 144 LEU 144 144 144 LEU LEU U . n A 1 145 ARG 145 145 145 ARG ARG U . n A 1 146 GLY 146 146 146 GLY GLY U . n A 1 147 CYS 147 147 147 CYS CYS U . n A 1 148 GLY 148 148 148 GLY GLY U . n A 1 149 TYR 149 149 149 TYR TYR U . n A 1 150 LEU 150 150 150 LEU LEU U . n A 1 151 PRO 151 151 151 PRO PRO U . n A 1 152 GLY 152 152 152 GLY GLY U . n A 1 153 CYS 153 153 153 CYS CYS U . n A 1 154 PRO 154 154 154 PRO PRO U . n A 1 155 GLY 155 155 155 GLY GLY U . n A 1 156 SER 156 156 156 SER SER U . n A 1 157 ASN 157 157 157 ASN ASN U . n A 1 158 GLY 158 158 158 GLY GLY U . n A 1 159 PHE 159 159 159 PHE PHE U . n A 1 160 HIS 160 160 160 HIS HIS U . n A 1 161 ASN 161 161 161 ASN ASN U . n A 1 162 ASN 162 162 162 ASN ASN U . n A 1 163 ASP 163 163 163 ASP ASP U . n A 1 164 THR 164 164 164 THR THR U . n A 1 165 PHE 165 165 165 PHE PHE U . n A 1 166 HIS 166 166 166 HIS HIS U . n A 1 167 PHE 167 167 167 PHE PHE U . n A 1 168 LEU 168 168 168 LEU LEU U . n A 1 169 LYS 169 169 169 LYS LYS U . n A 1 170 CYS 170 170 170 CYS CYS U . n A 1 171 CYS 171 171 171 CYS CYS U . n A 1 172 ASN 172 172 172 ASN ASN U . n A 1 173 THR 173 173 173 THR THR U . n A 1 174 THR 174 174 174 THR THR U . n A 1 175 LYS 175 175 175 LYS LYS U . n A 1 176 CYS 176 176 176 CYS CYS U . n A 1 177 ASN 177 177 177 ASN ASN U . n A 1 178 GLU 178 178 178 GLU GLU U . n A 1 179 GLY 179 179 179 GLY GLY U . n A 1 180 PRO 180 180 180 PRO PRO U . n A 1 181 ILE 181 181 181 ILE ILE U . n A 1 182 LEU 182 182 182 LEU LEU U . n A 1 183 GLU 183 183 183 GLU GLU U . n A 1 184 LEU 184 184 184 LEU LEU U . n A 1 185 GLU 185 185 185 GLU GLU U . n A 1 186 ASN 186 186 186 ASN ASN U . n A 1 187 LEU 187 187 187 LEU LEU U . n A 1 188 PRO 188 188 188 PRO PRO U . n A 1 189 GLN 189 189 189 GLN GLN U . n A 1 190 ASN 190 190 190 ASN ASN U . n A 1 191 GLY 191 191 191 GLY GLY U . n A 1 192 ARG 192 192 192 ARG ARG U . n A 1 193 GLN 193 193 193 GLN GLN U . n A 1 194 CYS 194 194 194 CYS CYS U . n A 1 195 TYR 195 195 195 TYR TYR U . n A 1 196 SER 196 196 196 SER SER U . n A 1 197 CYS 197 197 197 CYS CYS U . n A 1 198 LYS 198 198 198 LYS LYS U . n A 1 199 GLY 199 199 199 GLY GLY U . n A 1 200 ASN 200 200 200 ASN ASN U . n A 1 201 SER 201 201 201 SER SER U . n A 1 202 THR 202 202 202 THR THR U . n A 1 203 HIS 203 203 203 HIS HIS U . n A 1 204 GLY 204 204 204 GLY GLY U . n A 1 205 CYS 205 205 205 CYS CYS U . n A 1 206 SER 206 206 206 SER SER U . n A 1 207 SER 207 207 207 SER SER U . n A 1 208 GLU 208 208 208 GLU GLU U . n A 1 209 GLU 209 209 209 GLU GLU U . n A 1 210 THR 210 210 210 THR THR U . n A 1 211 PHE 211 211 211 PHE PHE U . n A 1 212 LEU 212 212 212 LEU LEU U . n A 1 213 ILE 213 213 213 ILE ILE U . n A 1 214 ASP 214 214 214 ASP ASP U . n A 1 215 CYS 215 215 215 CYS CYS U . n A 1 216 ARG 216 216 216 ARG ARG U . n A 1 217 GLY 217 217 217 GLY GLY U . n A 1 218 PRO 218 218 218 PRO PRO U . n A 1 219 MET 219 219 219 MET MET U . n A 1 220 ASN 220 220 220 ASN ASN U . n A 1 221 GLN 221 221 221 GLN GLN U . n A 1 222 CYS 222 222 222 CYS CYS U . n A 1 223 LEU 223 223 223 LEU LEU U . n A 1 224 VAL 224 224 224 VAL VAL U . n A 1 225 ALA 225 225 225 ALA ALA U . n A 1 226 THR 226 226 226 THR THR U . n A 1 227 GLY 227 227 227 GLY GLY U . n A 1 228 THR 228 228 228 THR THR U . n A 1 229 HIS 229 229 229 HIS HIS U . n A 1 230 GLU 230 230 230 GLU GLU U . n A 1 231 PRO 231 231 231 PRO PRO U . n A 1 232 LYS 232 232 232 LYS LYS U . n A 1 233 ASN 233 233 233 ASN ASN U . n A 1 234 GLN 234 234 234 GLN GLN U . n A 1 235 SER 235 235 235 SER SER U . n A 1 236 TYR 236 236 236 TYR TYR U . n A 1 237 MET 237 237 237 MET MET U . n A 1 238 VAL 238 238 238 VAL VAL U . n A 1 239 ARG 239 239 239 ARG ARG U . n A 1 240 GLY 240 240 240 GLY GLY U . n A 1 241 CYS 241 241 241 CYS CYS U . n A 1 242 ALA 242 242 242 ALA ALA U . n A 1 243 THR 243 243 243 THR THR U . n A 1 244 ALA 244 244 244 ALA ALA U . n A 1 245 SER 245 245 245 SER SER U . n A 1 246 MET 246 246 246 MET MET U . n A 1 247 CYS 247 247 247 CYS CYS U . n A 1 248 GLN 248 248 248 GLN GLN U . n A 1 249 HIS 249 249 249 HIS HIS U . n A 1 250 ALA 250 250 250 ALA ALA U . n A 1 251 HIS 251 251 251 HIS HIS U . n A 1 252 LEU 252 252 252 LEU LEU U . n A 1 253 GLY 253 253 253 GLY GLY U . n A 1 254 ASP 254 254 254 ASP ASP U . n A 1 255 ALA 255 255 255 ALA ALA U . n A 1 256 PHE 256 256 256 PHE PHE U . n A 1 257 SER 257 257 257 SER SER U . n A 1 258 MET 258 258 258 MET MET U . n A 1 259 CYS 259 259 259 CYS CYS U . n A 1 260 HIS 260 260 260 HIS HIS U . n A 1 261 ILE 261 261 261 ILE ILE U . n A 1 262 ASP 262 262 262 ASP ASP U . n A 1 263 VAL 263 263 263 VAL VAL U . n A 1 264 SER 264 264 264 SER SER U . n A 1 265 CYS 265 265 265 CYS CYS U . n A 1 266 CYS 266 266 266 CYS CYS U . n A 1 267 THR 267 267 267 THR THR U . n A 1 268 LYS 268 268 268 LYS LYS U . n A 1 269 SER 269 269 269 SER SER U . n A 1 270 GLY 270 270 270 GLY GLY U . n A 1 271 CYS 271 271 271 CYS CYS U . n A 1 272 ASN 272 272 272 ASN ASN U . n A 1 273 HIS 273 273 273 HIS HIS U . n A 1 274 PRO 274 274 274 PRO PRO U . n A 1 275 ASP 275 275 275 ASP ASP U . n A 1 276 LEU 276 276 276 LEU LEU U . n A 1 277 ASP 277 277 277 ASP ASP U . n A 1 278 VAL 278 278 278 VAL VAL U . n A 1 279 GLN 279 279 279 GLN GLN U . n A 1 280 TYR 280 280 280 TYR TYR U . n A 1 281 ARG 281 281 281 ARG ARG U . n A 1 282 SER 282 282 282 SER SER U . n A 1 283 GLY 283 283 283 GLY GLY U . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 503 503 NAG NAG U . D 4 HOH 1 601 1 HOH HOH U . D 4 HOH 2 602 2 HOH HOH U . D 4 HOH 3 603 3 HOH HOH U . D 4 HOH 4 604 4 HOH HOH U . D 4 HOH 5 605 5 HOH HOH U . D 4 HOH 6 606 6 HOH HOH U . D 4 HOH 7 607 7 HOH HOH U . D 4 HOH 8 608 8 HOH HOH U . D 4 HOH 9 609 9 HOH HOH U . D 4 HOH 10 610 10 HOH HOH U . D 4 HOH 11 611 11 HOH HOH U . D 4 HOH 12 612 12 HOH HOH U . D 4 HOH 13 613 13 HOH HOH U . D 4 HOH 14 614 14 HOH HOH U . D 4 HOH 15 615 15 HOH HOH U . D 4 HOH 16 616 16 HOH HOH U . D 4 HOH 17 617 17 HOH HOH U . D 4 HOH 18 618 18 HOH HOH U . D 4 HOH 19 619 19 HOH HOH U . D 4 HOH 20 620 20 HOH HOH U . D 4 HOH 21 621 21 HOH HOH U . D 4 HOH 22 622 22 HOH HOH U . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 200 U ASN 200 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 52 U ASN 52 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-18 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2023-09-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Refinement description' 9 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_branch_scheme 5 2 'Structure model' pdbx_chem_comp_identifier 6 2 'Structure model' pdbx_entity_branch 7 2 'Structure model' pdbx_entity_branch_descriptor 8 2 'Structure model' pdbx_entity_branch_link 9 2 'Structure model' pdbx_entity_branch_list 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_struct_assembly_gen 13 2 'Structure model' struct_asym 14 2 'Structure model' struct_conn 15 2 'Structure model' struct_ref_seq_dif 16 2 'Structure model' struct_site 17 2 'Structure model' struct_site_gen 18 3 'Structure model' chem_comp 19 3 'Structure model' chem_comp_atom 20 3 'Structure model' chem_comp_bond 21 3 'Structure model' database_2 22 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_asym_id' 2 2 'Structure model' '_atom_site.auth_seq_id' 3 2 'Structure model' '_atom_site.label_asym_id' 4 2 'Structure model' '_atom_site.label_entity_id' 5 2 'Structure model' '_chem_comp.name' 6 2 'Structure model' '_chem_comp.type' 7 2 'Structure model' '_pdbx_entity_nonpoly.entity_id' 8 2 'Structure model' '_pdbx_entity_nonpoly.name' 9 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 10 2 'Structure model' '_struct_conn.pdbx_dist_value' 11 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 2 'Structure model' '_struct_conn.pdbx_role' 13 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 2 'Structure model' '_struct_ref_seq_dif.details' 24 3 'Structure model' '_chem_comp.pdbx_synonyms' 25 3 'Structure model' '_database_2.pdbx_DOI' 26 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG U ASN 200 ? ? C1 U NAG 503 ? ? 2.01 2 1 ND2 U ASN 200 ? ? O5 U NAG 503 ? ? 2.08 3 1 OD1 U ASN 200 ? ? C1 U NAG 503 ? ? 2.09 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 U _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 160 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 U _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 160 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.427 _pdbx_validate_rmsd_bond.bond_target_value 1.354 _pdbx_validate_rmsd_bond.bond_deviation 0.073 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE U ARG 13 ? ? CZ U ARG 13 ? ? NH2 U ARG 13 ? ? 116.31 120.30 -3.99 0.50 N 2 1 CA U CYS 176 ? ? CB U CYS 176 ? ? SG U CYS 176 ? ? 98.49 114.00 -15.51 1.80 N 3 1 NE U ARG 239 ? ? CZ U ARG 239 ? ? NH2 U ARG 239 ? ? 117.02 120.30 -3.28 0.50 N 4 1 CB U VAL 263 ? ? CA U VAL 263 ? ? C U VAL 263 ? ? 98.78 111.40 -12.62 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU U 34 ? ? 26.21 70.48 2 1 GLU U 49 ? ? 75.25 66.81 3 1 TYR U 92 ? ? -141.16 -156.36 4 1 ASN U 161 ? ? -134.25 -156.64 5 1 LYS U 175 ? ? 46.53 20.65 6 1 CYS U 197 ? ? 179.40 164.59 7 1 HIS U 260 ? ? 63.29 67.41 8 1 ARG U 281 ? ? 28.96 30.96 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 U SER 81 ? A SER 81 2 1 Y 1 U GLY 82 ? A GLY 82 3 1 Y 1 U ARG 83 ? A ARG 83 4 1 Y 1 U ALA 84 ? A ALA 84 5 1 Y 1 U VAL 85 ? A VAL 85 6 1 Y 1 U THR 86 ? A THR 86 7 1 Y 1 U TYR 87 ? A TYR 87 8 1 Y 1 U SER 88 ? A SER 88 9 1 Y 1 U ARG 89 ? A ARG 89 10 1 Y 1 U SER 90 ? A SER 90 11 1 Y 1 U ILE 130 ? A ILE 130 12 1 Y 1 U GLN 131 ? A GLN 131 13 1 Y 1 U GLU 132 ? A GLU 132 14 1 Y 1 U GLY 133 ? A GLY 133 15 1 Y 1 U GLU 134 ? A GLU 134 16 1 Y 1 U GLU 135 ? A GLU 135 17 1 Y 1 U GLY 136 ? A GLY 136 18 1 Y 1 U ARG 137 ? A ARG 137 19 1 Y 1 U PRO 138 ? A PRO 138 20 1 Y 1 U LYS 139 ? A LYS 139 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NAG C1 C N R 250 NAG C2 C N R 251 NAG C3 C N R 252 NAG C4 C N S 253 NAG C5 C N R 254 NAG C6 C N N 255 NAG C7 C N N 256 NAG C8 C N N 257 NAG N2 N N N 258 NAG O1 O N N 259 NAG O3 O N N 260 NAG O4 O N N 261 NAG O5 O N N 262 NAG O6 O N N 263 NAG O7 O N N 264 NAG H1 H N N 265 NAG H2 H N N 266 NAG H3 H N N 267 NAG H4 H N N 268 NAG H5 H N N 269 NAG H61 H N N 270 NAG H62 H N N 271 NAG H81 H N N 272 NAG H82 H N N 273 NAG H83 H N N 274 NAG HN2 H N N 275 NAG HO1 H N N 276 NAG HO3 H N N 277 NAG HO4 H N N 278 NAG HO6 H N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TRP N N N N 351 TRP CA C N S 352 TRP C C N N 353 TRP O O N N 354 TRP CB C N N 355 TRP CG C Y N 356 TRP CD1 C Y N 357 TRP CD2 C Y N 358 TRP NE1 N Y N 359 TRP CE2 C Y N 360 TRP CE3 C Y N 361 TRP CZ2 C Y N 362 TRP CZ3 C Y N 363 TRP CH2 C Y N 364 TRP OXT O N N 365 TRP H H N N 366 TRP H2 H N N 367 TRP HA H N N 368 TRP HB2 H N N 369 TRP HB3 H N N 370 TRP HD1 H N N 371 TRP HE1 H N N 372 TRP HE3 H N N 373 TRP HZ2 H N N 374 TRP HZ3 H N N 375 TRP HH2 H N N 376 TRP HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 VAL N N N N 402 VAL CA C N S 403 VAL C C N N 404 VAL O O N N 405 VAL CB C N N 406 VAL CG1 C N N 407 VAL CG2 C N N 408 VAL OXT O N N 409 VAL H H N N 410 VAL H2 H N N 411 VAL HA H N N 412 VAL HB H N N 413 VAL HG11 H N N 414 VAL HG12 H N N 415 VAL HG13 H N N 416 VAL HG21 H N N 417 VAL HG22 H N N 418 VAL HG23 H N N 419 VAL HXT H N N 420 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NAG C1 C2 sing N N 237 NAG C1 O1 sing N N 238 NAG C1 O5 sing N N 239 NAG C1 H1 sing N N 240 NAG C2 C3 sing N N 241 NAG C2 N2 sing N N 242 NAG C2 H2 sing N N 243 NAG C3 C4 sing N N 244 NAG C3 O3 sing N N 245 NAG C3 H3 sing N N 246 NAG C4 C5 sing N N 247 NAG C4 O4 sing N N 248 NAG C4 H4 sing N N 249 NAG C5 C6 sing N N 250 NAG C5 O5 sing N N 251 NAG C5 H5 sing N N 252 NAG C6 O6 sing N N 253 NAG C6 H61 sing N N 254 NAG C6 H62 sing N N 255 NAG C7 C8 sing N N 256 NAG C7 N2 sing N N 257 NAG C7 O7 doub N N 258 NAG C8 H81 sing N N 259 NAG C8 H82 sing N N 260 NAG C8 H83 sing N N 261 NAG N2 HN2 sing N N 262 NAG O1 HO1 sing N N 263 NAG O3 HO3 sing N N 264 NAG O4 HO4 sing N N 265 NAG O6 HO6 sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TRP N CA sing N N 336 TRP N H sing N N 337 TRP N H2 sing N N 338 TRP CA C sing N N 339 TRP CA CB sing N N 340 TRP CA HA sing N N 341 TRP C O doub N N 342 TRP C OXT sing N N 343 TRP CB CG sing N N 344 TRP CB HB2 sing N N 345 TRP CB HB3 sing N N 346 TRP CG CD1 doub Y N 347 TRP CG CD2 sing Y N 348 TRP CD1 NE1 sing Y N 349 TRP CD1 HD1 sing N N 350 TRP CD2 CE2 doub Y N 351 TRP CD2 CE3 sing Y N 352 TRP NE1 CE2 sing Y N 353 TRP NE1 HE1 sing N N 354 TRP CE2 CZ2 sing Y N 355 TRP CE3 CZ3 doub Y N 356 TRP CE3 HE3 sing N N 357 TRP CZ2 CH2 doub Y N 358 TRP CZ2 HZ2 sing N N 359 TRP CZ3 CH2 sing Y N 360 TRP CZ3 HZ3 sing N N 361 TRP CH2 HH2 sing N N 362 TRP OXT HXT sing N N 363 TYR N CA sing N N 364 TYR N H sing N N 365 TYR N H2 sing N N 366 TYR CA C sing N N 367 TYR CA CB sing N N 368 TYR CA HA sing N N 369 TYR C O doub N N 370 TYR C OXT sing N N 371 TYR CB CG sing N N 372 TYR CB HB2 sing N N 373 TYR CB HB3 sing N N 374 TYR CG CD1 doub Y N 375 TYR CG CD2 sing Y N 376 TYR CD1 CE1 sing Y N 377 TYR CD1 HD1 sing N N 378 TYR CD2 CE2 doub Y N 379 TYR CD2 HD2 sing N N 380 TYR CE1 CZ doub Y N 381 TYR CE1 HE1 sing N N 382 TYR CE2 CZ sing Y N 383 TYR CE2 HE2 sing N N 384 TYR CZ OH sing N N 385 TYR OH HH sing N N 386 TYR OXT HXT sing N N 387 VAL N CA sing N N 388 VAL N H sing N N 389 VAL N H2 sing N N 390 VAL CA C sing N N 391 VAL CA CB sing N N 392 VAL CA HA sing N N 393 VAL C O doub N N 394 VAL C OXT sing N N 395 VAL CB CG1 sing N N 396 VAL CB CG2 sing N N 397 VAL CB HB sing N N 398 VAL CG1 HG11 sing N N 399 VAL CG1 HG12 sing N N 400 VAL CG1 HG13 sing N N 401 VAL CG2 HG21 sing N N 402 VAL CG2 HG22 sing N N 403 VAL CG2 HG23 sing N N 404 VAL OXT HXT sing N N 405 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 A NAG 1 U NAG 501 n B 2 NAG 2 A NAG 2 U NAG 502 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1YWH 'PDB ENTRY 1YWH and 2FD6' 2 ? 'experimental model' PDB 2FD6 'PDB ENTRY 1YWH and 2FD6' #