data_3U7H # _entry.id 3U7H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U7H NDB NA1351 RCSB RCSB068402 WWPDB D_1000068402 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YJ5 . unspecified PDB 3U7E . unspecified PDB 3U7f . unspecified PDB 3u7g . unspecified # _pdbx_database_status.entry_id 3U7H _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-13 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coquelle, N.' 1 'Havali, Z.' 2 'Bernstein, N.' 3 'Green, R.' 4 'Glover, J.N.M.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural basis for the phosphatase activity of polynucleotide kinase/phosphatase on single- and double-stranded DNA substrates.' Proc.Natl.Acad.Sci.USA 108 21022 21027 2011 PNASA6 US 0027-8424 0040 ? 22171004 10.1073/pnas.1112036108 1 'The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase.' 'Mol. Cell' 17 657 670 2005 MOCEFL US 1097-2765 2168 ? 15749016 10.1016/j.molcel.2005.02.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Coquelle, N.' 1 primary 'Havali-Shahriari, Z.' 2 primary 'Bernstein, N.' 3 primary 'Green, R.' 4 primary 'Glover, J.N.' 5 1 'Bernstein, N.K.' 6 1 'Williams, R.S.' 7 1 'Rakovszky, M.L.' 8 1 'Cui, D.' 9 1 'Green, R.' 10 1 'Karimi-Busheri, F.' 11 1 'Mani, R.S.' 12 1 'Galicia, S.' 13 1 'Koch, C.A.' 14 1 'Cass, C.E.' 15 1 'Durocher, D.' 16 1 'Weinfeld, M.' 17 1 'Glover, J.N.' 18 # _cell.length_a 42.830 _cell.length_b 62.530 _cell.length_c 67.980 _cell.angle_alpha 90.000 _cell.angle_beta 91.690 _cell.angle_gamma 90.000 _cell.entry_id 3U7H _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3U7H _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bifunctional polynucleotide phosphatase/kinase' 42378.699 1 '3.1.3.32, 2.7.1.78' D170A 'UNP residues 142-522' ? 2 polymer syn DNA 1445.985 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 6 water nat water 18.015 234 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;DNA 5'-kinase/3'-phosphatase, Polynucleotide kinase-3'-phosphatase, Polynucleotide 3'-phosphatase, 2'(3')-polynucleotidase, Polynucleotide 5'-hydroxyl-kinase ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;SSLGWESLKKLLVFTASGVKPQGKVAAFALDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQ (MSE)GIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSG(MSE)WDHLQEQANEGIPISVEDSVFVGDAA GRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSSLLSPNPEVVVAV GFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNF (CSO)ATIEQARHNNRFRE(MSE)TDPSHAPVSD(MSE)V(MSE)FSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQ RLYRQFSEG ; ;SSLGWESLKKLLVFTASGVKPQGKVAAFALDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGI GRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRK KKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFI QEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNR FREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG ; B ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DT)(DT)' TCCTT X ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 LEU n 1 4 GLY n 1 5 TRP n 1 6 GLU n 1 7 SER n 1 8 LEU n 1 9 LYS n 1 10 LYS n 1 11 LEU n 1 12 LEU n 1 13 VAL n 1 14 PHE n 1 15 THR n 1 16 ALA n 1 17 SER n 1 18 GLY n 1 19 VAL n 1 20 LYS n 1 21 PRO n 1 22 GLN n 1 23 GLY n 1 24 LYS n 1 25 VAL n 1 26 ALA n 1 27 ALA n 1 28 PHE n 1 29 ALA n 1 30 LEU n 1 31 ASP n 1 32 GLY n 1 33 THR n 1 34 LEU n 1 35 ILE n 1 36 THR n 1 37 THR n 1 38 ARG n 1 39 SER n 1 40 GLY n 1 41 LYS n 1 42 VAL n 1 43 PHE n 1 44 PRO n 1 45 THR n 1 46 SER n 1 47 PRO n 1 48 SER n 1 49 ASP n 1 50 TRP n 1 51 ARG n 1 52 ILE n 1 53 LEU n 1 54 TYR n 1 55 PRO n 1 56 GLU n 1 57 ILE n 1 58 PRO n 1 59 LYS n 1 60 LYS n 1 61 LEU n 1 62 GLN n 1 63 GLU n 1 64 LEU n 1 65 ALA n 1 66 ALA n 1 67 GLU n 1 68 GLY n 1 69 TYR n 1 70 LYS n 1 71 LEU n 1 72 VAL n 1 73 ILE n 1 74 PHE n 1 75 THR n 1 76 ASN n 1 77 GLN n 1 78 MSE n 1 79 GLY n 1 80 ILE n 1 81 GLY n 1 82 ARG n 1 83 GLY n 1 84 LYS n 1 85 LEU n 1 86 PRO n 1 87 ALA n 1 88 GLU n 1 89 VAL n 1 90 PHE n 1 91 LYS n 1 92 GLY n 1 93 LYS n 1 94 VAL n 1 95 GLU n 1 96 ALA n 1 97 VAL n 1 98 LEU n 1 99 GLU n 1 100 LYS n 1 101 LEU n 1 102 GLY n 1 103 VAL n 1 104 PRO n 1 105 PHE n 1 106 GLN n 1 107 VAL n 1 108 LEU n 1 109 VAL n 1 110 ALA n 1 111 THR n 1 112 HIS n 1 113 ALA n 1 114 GLY n 1 115 LEU n 1 116 ASN n 1 117 ARG n 1 118 LYS n 1 119 PRO n 1 120 VAL n 1 121 SER n 1 122 GLY n 1 123 MSE n 1 124 TRP n 1 125 ASP n 1 126 HIS n 1 127 LEU n 1 128 GLN n 1 129 GLU n 1 130 GLN n 1 131 ALA n 1 132 ASN n 1 133 GLU n 1 134 GLY n 1 135 ILE n 1 136 PRO n 1 137 ILE n 1 138 SER n 1 139 VAL n 1 140 GLU n 1 141 ASP n 1 142 SER n 1 143 VAL n 1 144 PHE n 1 145 VAL n 1 146 GLY n 1 147 ASP n 1 148 ALA n 1 149 ALA n 1 150 GLY n 1 151 ARG n 1 152 LEU n 1 153 ALA n 1 154 ASN n 1 155 TRP n 1 156 ALA n 1 157 PRO n 1 158 GLY n 1 159 ARG n 1 160 LYS n 1 161 LYS n 1 162 LYS n 1 163 ASP n 1 164 PHE n 1 165 SER n 1 166 CYS n 1 167 ALA n 1 168 ASP n 1 169 ARG n 1 170 LEU n 1 171 PHE n 1 172 ALA n 1 173 LEU n 1 174 ASN n 1 175 VAL n 1 176 GLY n 1 177 LEU n 1 178 PRO n 1 179 PHE n 1 180 ALA n 1 181 THR n 1 182 PRO n 1 183 GLU n 1 184 GLU n 1 185 PHE n 1 186 PHE n 1 187 LEU n 1 188 LYS n 1 189 TRP n 1 190 PRO n 1 191 ALA n 1 192 ALA n 1 193 ARG n 1 194 PHE n 1 195 GLU n 1 196 LEU n 1 197 PRO n 1 198 ALA n 1 199 PHE n 1 200 ASP n 1 201 PRO n 1 202 ARG n 1 203 THR n 1 204 ILE n 1 205 SER n 1 206 SER n 1 207 ALA n 1 208 GLY n 1 209 PRO n 1 210 LEU n 1 211 TYR n 1 212 LEU n 1 213 PRO n 1 214 GLU n 1 215 SER n 1 216 SER n 1 217 SER n 1 218 LEU n 1 219 LEU n 1 220 SER n 1 221 PRO n 1 222 ASN n 1 223 PRO n 1 224 GLU n 1 225 VAL n 1 226 VAL n 1 227 VAL n 1 228 ALA n 1 229 VAL n 1 230 GLY n 1 231 PHE n 1 232 PRO n 1 233 GLY n 1 234 ALA n 1 235 GLY n 1 236 LYS n 1 237 SER n 1 238 THR n 1 239 PHE n 1 240 ILE n 1 241 GLN n 1 242 GLU n 1 243 HIS n 1 244 LEU n 1 245 VAL n 1 246 SER n 1 247 ALA n 1 248 GLY n 1 249 TYR n 1 250 VAL n 1 251 HIS n 1 252 VAL n 1 253 ASN n 1 254 ARG n 1 255 ASP n 1 256 THR n 1 257 LEU n 1 258 GLY n 1 259 SER n 1 260 TRP n 1 261 GLN n 1 262 ARG n 1 263 CYS n 1 264 VAL n 1 265 SER n 1 266 SER n 1 267 CYS n 1 268 GLN n 1 269 ALA n 1 270 ALA n 1 271 LEU n 1 272 ARG n 1 273 GLN n 1 274 GLY n 1 275 LYS n 1 276 ARG n 1 277 VAL n 1 278 VAL n 1 279 ILE n 1 280 ASP n 1 281 ASN n 1 282 THR n 1 283 ASN n 1 284 PRO n 1 285 ASP n 1 286 VAL n 1 287 PRO n 1 288 SER n 1 289 ARG n 1 290 ALA n 1 291 ARG n 1 292 TYR n 1 293 ILE n 1 294 GLN n 1 295 CYS n 1 296 ALA n 1 297 LYS n 1 298 ASP n 1 299 ALA n 1 300 GLY n 1 301 VAL n 1 302 PRO n 1 303 CYS n 1 304 ARG n 1 305 CYS n 1 306 PHE n 1 307 ASN n 1 308 PHE n 1 309 CSO n 1 310 ALA n 1 311 THR n 1 312 ILE n 1 313 GLU n 1 314 GLN n 1 315 ALA n 1 316 ARG n 1 317 HIS n 1 318 ASN n 1 319 ASN n 1 320 ARG n 1 321 PHE n 1 322 ARG n 1 323 GLU n 1 324 MSE n 1 325 THR n 1 326 ASP n 1 327 PRO n 1 328 SER n 1 329 HIS n 1 330 ALA n 1 331 PRO n 1 332 VAL n 1 333 SER n 1 334 ASP n 1 335 MSE n 1 336 VAL n 1 337 MSE n 1 338 PHE n 1 339 SER n 1 340 TYR n 1 341 ARG n 1 342 LYS n 1 343 GLN n 1 344 PHE n 1 345 GLU n 1 346 PRO n 1 347 PRO n 1 348 THR n 1 349 LEU n 1 350 ALA n 1 351 GLU n 1 352 GLY n 1 353 PHE n 1 354 LEU n 1 355 GLU n 1 356 ILE n 1 357 LEU n 1 358 GLU n 1 359 ILE n 1 360 PRO n 1 361 PHE n 1 362 ARG n 1 363 LEU n 1 364 GLN n 1 365 GLU n 1 366 HIS n 1 367 LEU n 1 368 ASP n 1 369 PRO n 1 370 ALA n 1 371 LEU n 1 372 GLN n 1 373 ARG n 1 374 LEU n 1 375 TYR n 1 376 ARG n 1 377 GLN n 1 378 PHE n 1 379 SER n 1 380 GLU n 1 381 GLY n 2 1 DT n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Pnkp _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA substrate of PNKP phosphatase domain' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PNKP_MOUSE Q9JLV6 1 ;SSLGWESLKKLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGI GRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRK KKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFI QEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNR FREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG ; 142 ? 2 PDB 3U7H 3U7H 2 TCCTT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U7H B 1 ? 381 ? Q9JLV6 142 ? 522 ? 142 522 2 2 3U7H X 1 ? 5 ? 3U7H 523 ? 527 ? 523 527 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3U7H _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 29 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9JLV6 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 170 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 170 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3U7H _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '25% PEG 3350, pH 7, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2010-04-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 3U7H _reflns.d_resolution_high 2.000 _reflns.number_obs 23538 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_netI_over_sigmaI 11.310 _reflns.percent_possible_obs 96.500 _reflns.B_iso_Wilson_estimate 27.541 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F -3.000 _reflns.d_resolution_low 31.0340 _reflns.number_all 23538 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.000 2.050 3489 ? 1627 0.506 1.850 ? ? ? ? ? 92.700 1 1 2.050 2.100 3289 ? 1447 0.418 2.370 ? ? ? ? ? 93.200 2 1 2.100 2.200 6461 ? 2606 0.376 2.670 ? ? ? ? ? 95.900 3 1 2.200 2.300 5841 ? 2165 0.302 3.570 ? ? ? ? ? 95.100 4 1 2.300 2.400 5763 ? 1884 0.247 4.720 ? ? ? ? ? 97.700 5 1 2.400 2.450 2809 ? 813 0.241 5.360 ? ? ? ? ? 98.100 6 1 2.450 2.500 2654 ? 764 0.227 5.600 ? ? ? ? ? 97.800 7 1 2.500 2.550 2427 ? 696 0.193 6.350 ? ? ? ? ? 98.200 8 1 2.550 2.600 2266 ? 652 0.193 6.350 ? ? ? ? ? 98.800 9 1 2.600 2.800 7577 ? 2190 0.143 8.450 ? ? ? ? ? 98.500 10 1 2.800 3.000 5606 ? 1621 0.099 11.440 ? ? ? ? ? 98.500 11 1 3.000 3.500 9199 ? 2644 0.061 17.340 ? ? ? ? ? 98.400 12 1 3.500 5.000 10172 ? 2929 0.034 29.450 ? ? ? ? ? 97.200 13 1 5.000 10.000 4655 ? 1326 0.034 31.440 ? ? ? ? ? 94.100 14 1 10.000 31 626 ? 174 0.022 46.650 ? ? ? ? ? 80.900 15 1 # _refine.entry_id 3U7H _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 31.0340 _refine.pdbx_ls_sigma_F -3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.4600 _refine.ls_number_reflns_obs 23527 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1940 _refine.ls_R_factor_R_work 0.1918 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2365 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1176 _refine.ls_number_reflns_R_work 22351 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.4451 _refine.solvent_model_param_bsol 38.7740 _refine.solvent_model_param_ksol 0.3840 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.1302 _refine.aniso_B[2][2] 2.4228 _refine.aniso_B[3][3] -3.5529 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.3522 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.5700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8456 _refine.B_iso_max 112.800 _refine.B_iso_min 6.810 _refine.pdbx_overall_phase_error 23.0000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.320 _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2887 _refine_hist.pdbx_number_atoms_nucleic_acid 28 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 234 _refine_hist.number_atoms_total 3184 _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 31.0340 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 3030 0.009 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 4116 1.005 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 451 0.056 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 531 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1117 15.164 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 1.9999 2.0909 8 93.0000 2662 . 0.2555 0.2955 . 139 . 2801 . 'X-RAY DIFFRACTION' . 2.0909 2.2012 8 96.0000 2759 . 0.2305 0.2748 . 145 . 2904 . 'X-RAY DIFFRACTION' . 2.2012 2.3390 8 96.0000 2752 . 0.2189 0.2995 . 145 . 2897 . 'X-RAY DIFFRACTION' . 2.3390 2.5195 8 98.0000 2839 . 0.2171 0.2605 . 149 . 2988 . 'X-RAY DIFFRACTION' . 2.5195 2.7729 8 99.0000 2820 . 0.2045 0.2703 . 149 . 2969 . 'X-RAY DIFFRACTION' . 2.7729 3.1739 8 99.0000 2874 . 0.1880 0.2204 . 151 . 3025 . 'X-RAY DIFFRACTION' . 3.1739 3.9974 8 97.0000 2838 . 0.1635 0.2389 . 150 . 2988 . 'X-RAY DIFFRACTION' . 3.9974 31.0380 8 95.0000 2807 . 0.1667 0.1745 . 148 . 2955 . 'X-RAY DIFFRACTION' . # _struct.entry_id 3U7H _struct.title 'Crystal structure of mPNKP catalytic fragment (D170A) bound to single-stranded DNA (TCCTTp)' _struct.pdbx_descriptor 'PNKP/ DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U7H _struct_keywords.text 'protein-DNA complex, HAD family, pnkp, DNA repair, phosphatase, HYDROLASE, TRANSFERASE-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE,TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 6 ? K N N 6 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 0 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 56 ? GLU A 67 ? GLU B 197 GLU B 208 1 ? 12 HELX_P HELX_P2 2 GLN A 77 ? ARG A 82 ? GLN B 218 ARG B 223 1 ? 6 HELX_P HELX_P3 3 PRO A 86 ? GLY A 102 ? PRO B 227 GLY B 243 1 ? 17 HELX_P HELX_P4 4 SER A 121 ? ALA A 131 ? SER B 262 ALA B 272 1 ? 11 HELX_P HELX_P5 5 CYS A 166 ? GLY A 176 ? CYS B 307 GLY B 317 1 ? 11 HELX_P HELX_P6 6 THR A 181 ? LYS A 188 ? THR B 322 LYS B 329 1 ? 8 HELX_P HELX_P7 7 ASP A 200 ? ILE A 204 ? ASP B 341 ILE B 345 5 ? 5 HELX_P HELX_P8 8 GLY A 235 ? LEU A 244 ? GLY B 376 LEU B 385 1 ? 10 HELX_P HELX_P9 9 VAL A 245 ? GLY A 248 ? VAL B 386 GLY B 389 5 ? 4 HELX_P HELX_P10 10 ASN A 253 ? LEU A 257 ? ASN B 394 LEU B 398 5 ? 5 HELX_P HELX_P11 11 VAL A 264 ? GLN A 273 ? VAL B 405 GLN B 414 1 ? 10 HELX_P HELX_P12 12 ASP A 285 ? GLY A 300 ? ASP B 426 GLY B 441 1 ? 16 HELX_P HELX_P13 13 THR A 311 ? ASP A 326 ? THR B 452 ASP B 467 1 ? 16 HELX_P HELX_P14 14 SER A 333 ? PHE A 344 ? SER B 474 PHE B 485 1 ? 12 HELX_P HELX_P15 15 THR A 348 ? GLY A 352 ? THR B 489 GLY B 493 5 ? 5 HELX_P HELX_P16 16 ASP A 368 ? ARG A 376 ? ASP B 509 ARG B 517 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 267 SG ? ? ? 1_555 A CYS 295 SG ? ? B CYS 408 B CYS 436 1_555 ? ? ? ? ? ? ? 2.944 ? covale1 covale ? ? A GLN 77 C ? ? ? 1_555 A MSE 78 N ? ? B GLN 218 B MSE 219 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 78 C ? ? ? 1_555 A GLY 79 N ? ? B MSE 219 B GLY 220 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A GLY 122 C ? ? ? 1_555 A MSE 123 N ? ? B GLY 263 B MSE 264 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale ? ? A MSE 123 C ? ? ? 1_555 A TRP 124 N ? ? B MSE 264 B TRP 265 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A PHE 308 C ? ? ? 1_555 A CSO 309 N ? ? B PHE 449 B CSO 450 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? A CSO 309 C ? ? ? 1_555 A ALA 310 N ? ? B CSO 450 B ALA 451 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A GLU 323 C ? ? ? 1_555 A MSE 324 N ? ? B GLU 464 B MSE 465 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 324 C ? ? ? 1_555 A THR 325 N ? ? B MSE 465 B THR 466 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale ? ? A ASP 334 C ? ? ? 1_555 A MSE 335 N ? ? B ASP 475 B MSE 476 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 335 C ? ? ? 1_555 A VAL 336 N ? ? B MSE 476 B VAL 477 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A VAL 336 C ? ? ? 1_555 A MSE 337 N ? ? B VAL 477 B MSE 478 1_555 ? ? ? ? ? ? ? 1.333 ? covale12 covale ? ? A MSE 337 C ? ? ? 1_555 A PHE 338 N ? ? B MSE 478 B PHE 479 1_555 ? ? ? ? ? ? ? 1.333 ? metalc1 metalc ? ? I PO4 . O1 ? ? ? 1_555 H MG . MG ? ? X PO4 528 B MG 532 1_555 ? ? ? ? ? ? ? 1.848 ? metalc2 metalc ? ? A ASP 147 OD1 ? ? ? 1_555 H MG . MG ? ? B ASP 288 B MG 532 1_555 ? ? ? ? ? ? ? 2.127 ? metalc3 metalc ? ? A ASP 31 O ? ? ? 1_555 H MG . MG ? ? B ASP 172 B MG 532 1_555 ? ? ? ? ? ? ? 2.223 ? metalc4 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 532 B HOH 617 1_555 ? ? ? ? ? ? ? 2.061 ? metalc5 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 532 B HOH 27 1_555 ? ? ? ? ? ? ? 2.087 ? covale13 covale ? ? B DT 5 "O3'" ? ? ? 1_555 I PO4 . P ? ? X DT 527 X PO4 528 1_555 ? ? ? ? ? ? ? 1.613 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 118 A . ? LYS 259 B PRO 119 A ? PRO 260 B 1 8.05 2 LEU 212 A . ? LEU 353 B PRO 213 A ? PRO 354 B 1 -2.64 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 4 ? LEU A 8 ? GLY B 145 LEU B 149 A 2 LEU A 11 ? THR A 15 ? LEU B 152 THR B 156 A 3 GLN A 106 ? ALA A 110 ? GLN B 247 ALA B 251 A 4 LYS A 70 ? ASN A 76 ? LYS B 211 ASN B 217 A 5 VAL A 25 ? PHE A 28 ? VAL B 166 PHE B 169 A 6 VAL A 143 ? VAL A 145 ? VAL B 284 VAL B 286 A 7 PHE A 179 ? ALA A 180 ? PHE B 320 ALA B 321 B 1 ILE A 35 ? THR A 36 ? ILE B 176 THR B 177 B 2 ARG A 51 ? ILE A 52 ? ARG B 192 ILE B 193 C 1 VAL A 250 ? VAL A 252 ? VAL B 391 VAL B 393 C 2 VAL A 277 ? ILE A 279 ? VAL B 418 ILE B 420 C 3 VAL A 225 ? VAL A 229 ? VAL B 366 VAL B 370 C 4 CYS A 303 ? PHE A 308 ? CYS B 444 PHE B 449 C 5 GLU A 355 ? ILE A 359 ? GLU B 496 ILE B 500 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 8 ? N LEU B 149 O LEU A 11 ? O LEU B 152 A 2 3 N PHE A 14 ? N PHE B 155 O VAL A 107 ? O VAL B 248 A 3 4 O ALA A 110 ? O ALA B 251 N THR A 75 ? N THR B 216 A 4 5 O LYS A 70 ? O LYS B 211 N ALA A 26 ? N ALA B 167 A 5 6 N ALA A 27 ? N ALA B 168 O VAL A 143 ? O VAL B 284 A 6 7 N PHE A 144 ? N PHE B 285 O ALA A 180 ? O ALA B 321 B 1 2 N THR A 36 ? N THR B 177 O ARG A 51 ? O ARG B 192 C 1 2 N VAL A 250 ? N VAL B 391 O VAL A 278 ? O VAL B 419 C 2 3 O ILE A 279 ? O ILE B 420 N VAL A 226 ? N VAL B 367 C 3 4 N VAL A 229 ? N VAL B 370 O PHE A 308 ? O PHE B 449 C 4 5 N ASN A 307 ? N ASN B 448 O LEU A 357 ? O LEU B 498 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE PO4 X 528' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL B 1' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL B 2' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL B 529' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 530' AC6 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GOL B 531' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG B 532' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 HOH J . ? HOH B 27 . ? 1_555 ? 2 AC1 9 LEU A 30 ? LEU B 171 . ? 1_555 ? 3 AC1 9 ASP A 31 ? ASP B 172 . ? 1_555 ? 4 AC1 9 THR A 75 ? THR B 216 . ? 1_555 ? 5 AC1 9 ASN A 76 ? ASN B 217 . ? 1_555 ? 6 AC1 9 LYS A 118 ? LYS B 259 . ? 1_555 ? 7 AC1 9 MG H . ? MG B 532 . ? 1_555 ? 8 AC1 9 HOH K . ? HOH X 46 . ? 1_555 ? 9 AC1 9 DT B 5 ? DT X 527 . ? 1_555 ? 10 AC2 8 HOH J . ? HOH B 52 . ? 1_555 ? 11 AC2 8 PRO A 197 ? PRO B 338 . ? 1_555 ? 12 AC2 8 PHE A 199 ? PHE B 340 . ? 1_555 ? 13 AC2 8 HIS A 317 ? HIS B 458 . ? 1_555 ? 14 AC2 8 ARG A 320 ? ARG B 461 . ? 1_555 ? 15 AC2 8 PHE A 378 ? PHE B 519 . ? 1_555 ? 16 AC2 8 SER A 379 ? SER B 520 . ? 1_555 ? 17 AC2 8 GLU A 380 ? GLU B 521 . ? 1_555 ? 18 AC3 8 HOH J . ? HOH B 28 . ? 1_555 ? 19 AC3 8 VAL A 19 ? VAL B 160 . ? 1_555 ? 20 AC3 8 LYS A 20 ? LYS B 161 . ? 1_555 ? 21 AC3 8 GLN A 22 ? GLN B 163 . ? 1_555 ? 22 AC3 8 TYR A 69 ? TYR B 210 . ? 1_555 ? 23 AC3 8 LYS A 70 ? LYS B 211 . ? 1_555 ? 24 AC3 8 LEU A 71 ? LEU B 212 . ? 1_555 ? 25 AC3 8 HOH J . ? HOH B 544 . ? 1_555 ? 26 AC4 5 HOH J . ? HOH B 24 . ? 1_555 ? 27 AC4 5 ARG A 169 ? ARG B 310 . ? 1_555 ? 28 AC4 5 GLU A 184 ? GLU B 325 . ? 1_555 ? 29 AC4 5 ALA A 191 ? ALA B 332 . ? 1_555 ? 30 AC4 5 PHE A 194 ? PHE B 335 . ? 1_555 ? 31 AC5 3 HOH J . ? HOH B 38 . ? 1_555 ? 32 AC5 3 TYR A 69 ? TYR B 210 . ? 1_555 ? 33 AC5 3 PHE A 185 ? PHE B 326 . ? 1_555 ? 34 AC6 9 HOH J . ? HOH B 95 . ? 1_555 ? 35 AC6 9 PHE A 231 ? PHE B 372 . ? 1_555 ? 36 AC6 9 PRO A 232 ? PRO B 373 . ? 1_555 ? 37 AC6 9 GLY A 233 ? GLY B 374 . ? 1_555 ? 38 AC6 9 ALA A 234 ? ALA B 375 . ? 1_555 ? 39 AC6 9 GLY A 235 ? GLY B 376 . ? 1_555 ? 40 AC6 9 LYS A 236 ? LYS B 377 . ? 1_555 ? 41 AC6 9 HOH J . ? HOH B 615 . ? 1_555 ? 42 AC6 9 HOH J . ? HOH B 618 . ? 1_555 ? 43 AC7 5 HOH J . ? HOH B 27 . ? 1_555 ? 44 AC7 5 ASP A 31 ? ASP B 172 . ? 1_555 ? 45 AC7 5 ASP A 147 ? ASP B 288 . ? 1_555 ? 46 AC7 5 HOH J . ? HOH B 617 . ? 1_555 ? 47 AC7 5 PO4 I . ? PO4 X 528 . ? 1_555 ? # _atom_sites.entry_id 3U7H _atom_sites.fract_transf_matrix[1][1] 0.023348 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000691 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015992 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014717 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 142 142 SER SER B . n A 1 2 SER 2 143 143 SER SER B . n A 1 3 LEU 3 144 144 LEU LEU B . n A 1 4 GLY 4 145 145 GLY GLY B . n A 1 5 TRP 5 146 146 TRP TRP B . n A 1 6 GLU 6 147 147 GLU GLU B . n A 1 7 SER 7 148 148 SER SER B . n A 1 8 LEU 8 149 149 LEU LEU B . n A 1 9 LYS 9 150 150 LYS LYS B . n A 1 10 LYS 10 151 151 LYS LYS B . n A 1 11 LEU 11 152 152 LEU LEU B . n A 1 12 LEU 12 153 153 LEU LEU B . n A 1 13 VAL 13 154 154 VAL VAL B . n A 1 14 PHE 14 155 155 PHE PHE B . n A 1 15 THR 15 156 156 THR THR B . n A 1 16 ALA 16 157 157 ALA ALA B . n A 1 17 SER 17 158 158 SER SER B . n A 1 18 GLY 18 159 159 GLY GLY B . n A 1 19 VAL 19 160 160 VAL VAL B . n A 1 20 LYS 20 161 161 LYS LYS B . n A 1 21 PRO 21 162 162 PRO PRO B . n A 1 22 GLN 22 163 163 GLN GLN B . n A 1 23 GLY 23 164 164 GLY GLY B . n A 1 24 LYS 24 165 165 LYS LYS B . n A 1 25 VAL 25 166 166 VAL VAL B . n A 1 26 ALA 26 167 167 ALA ALA B . n A 1 27 ALA 27 168 168 ALA ALA B . n A 1 28 PHE 28 169 169 PHE PHE B . n A 1 29 ALA 29 170 170 ALA ALA B . n A 1 30 LEU 30 171 171 LEU LEU B . n A 1 31 ASP 31 172 172 ASP ASP B . n A 1 32 GLY 32 173 173 GLY GLY B . n A 1 33 THR 33 174 174 THR THR B . n A 1 34 LEU 34 175 175 LEU LEU B . n A 1 35 ILE 35 176 176 ILE ILE B . n A 1 36 THR 36 177 177 THR THR B . n A 1 37 THR 37 178 178 THR THR B . n A 1 38 ARG 38 179 179 ARG ARG B . n A 1 39 SER 39 180 180 SER SER B . n A 1 40 GLY 40 181 181 GLY GLY B . n A 1 41 LYS 41 182 182 LYS LYS B . n A 1 42 VAL 42 183 183 VAL VAL B . n A 1 43 PHE 43 184 184 PHE PHE B . n A 1 44 PRO 44 185 185 PRO PRO B . n A 1 45 THR 45 186 186 THR THR B . n A 1 46 SER 46 187 187 SER SER B . n A 1 47 PRO 47 188 188 PRO PRO B . n A 1 48 SER 48 189 189 SER SER B . n A 1 49 ASP 49 190 190 ASP ASP B . n A 1 50 TRP 50 191 191 TRP TRP B . n A 1 51 ARG 51 192 192 ARG ARG B . n A 1 52 ILE 52 193 193 ILE ILE B . n A 1 53 LEU 53 194 194 LEU LEU B . n A 1 54 TYR 54 195 195 TYR TYR B . n A 1 55 PRO 55 196 196 PRO PRO B . n A 1 56 GLU 56 197 197 GLU GLU B . n A 1 57 ILE 57 198 198 ILE ILE B . n A 1 58 PRO 58 199 199 PRO PRO B . n A 1 59 LYS 59 200 200 LYS LYS B . n A 1 60 LYS 60 201 201 LYS LYS B . n A 1 61 LEU 61 202 202 LEU LEU B . n A 1 62 GLN 62 203 203 GLN GLN B . n A 1 63 GLU 63 204 204 GLU GLU B . n A 1 64 LEU 64 205 205 LEU LEU B . n A 1 65 ALA 65 206 206 ALA ALA B . n A 1 66 ALA 66 207 207 ALA ALA B . n A 1 67 GLU 67 208 208 GLU GLU B . n A 1 68 GLY 68 209 209 GLY GLY B . n A 1 69 TYR 69 210 210 TYR TYR B . n A 1 70 LYS 70 211 211 LYS LYS B . n A 1 71 LEU 71 212 212 LEU LEU B . n A 1 72 VAL 72 213 213 VAL VAL B . n A 1 73 ILE 73 214 214 ILE ILE B . n A 1 74 PHE 74 215 215 PHE PHE B . n A 1 75 THR 75 216 216 THR THR B . n A 1 76 ASN 76 217 217 ASN ASN B . n A 1 77 GLN 77 218 218 GLN GLN B . n A 1 78 MSE 78 219 219 MSE MSE B . n A 1 79 GLY 79 220 220 GLY GLY B . n A 1 80 ILE 80 221 221 ILE ILE B . n A 1 81 GLY 81 222 222 GLY GLY B . n A 1 82 ARG 82 223 223 ARG ARG B . n A 1 83 GLY 83 224 224 GLY GLY B . n A 1 84 LYS 84 225 225 LYS LYS B . n A 1 85 LEU 85 226 226 LEU LEU B . n A 1 86 PRO 86 227 227 PRO PRO B . n A 1 87 ALA 87 228 228 ALA ALA B . n A 1 88 GLU 88 229 229 GLU GLU B . n A 1 89 VAL 89 230 230 VAL VAL B . n A 1 90 PHE 90 231 231 PHE PHE B . n A 1 91 LYS 91 232 232 LYS LYS B . n A 1 92 GLY 92 233 233 GLY GLY B . n A 1 93 LYS 93 234 234 LYS LYS B . n A 1 94 VAL 94 235 235 VAL VAL B . n A 1 95 GLU 95 236 236 GLU GLU B . n A 1 96 ALA 96 237 237 ALA ALA B . n A 1 97 VAL 97 238 238 VAL VAL B . n A 1 98 LEU 98 239 239 LEU LEU B . n A 1 99 GLU 99 240 240 GLU GLU B . n A 1 100 LYS 100 241 241 LYS LYS B . n A 1 101 LEU 101 242 242 LEU LEU B . n A 1 102 GLY 102 243 243 GLY GLY B . n A 1 103 VAL 103 244 244 VAL VAL B . n A 1 104 PRO 104 245 245 PRO PRO B . n A 1 105 PHE 105 246 246 PHE PHE B . n A 1 106 GLN 106 247 247 GLN GLN B . n A 1 107 VAL 107 248 248 VAL VAL B . n A 1 108 LEU 108 249 249 LEU LEU B . n A 1 109 VAL 109 250 250 VAL VAL B . n A 1 110 ALA 110 251 251 ALA ALA B . n A 1 111 THR 111 252 252 THR THR B . n A 1 112 HIS 112 253 253 HIS HIS B . n A 1 113 ALA 113 254 254 ALA ALA B . n A 1 114 GLY 114 255 255 GLY GLY B . n A 1 115 LEU 115 256 256 LEU LEU B . n A 1 116 ASN 116 257 257 ASN ASN B . n A 1 117 ARG 117 258 258 ARG ARG B . n A 1 118 LYS 118 259 259 LYS LYS B . n A 1 119 PRO 119 260 260 PRO PRO B . n A 1 120 VAL 120 261 261 VAL VAL B . n A 1 121 SER 121 262 262 SER SER B . n A 1 122 GLY 122 263 263 GLY GLY B . n A 1 123 MSE 123 264 264 MSE MSE B . n A 1 124 TRP 124 265 265 TRP TRP B . n A 1 125 ASP 125 266 266 ASP ASP B . n A 1 126 HIS 126 267 267 HIS HIS B . n A 1 127 LEU 127 268 268 LEU LEU B . n A 1 128 GLN 128 269 269 GLN GLN B . n A 1 129 GLU 129 270 270 GLU GLU B . n A 1 130 GLN 130 271 271 GLN GLN B . n A 1 131 ALA 131 272 272 ALA ALA B . n A 1 132 ASN 132 273 273 ASN ASN B . n A 1 133 GLU 133 274 274 GLU GLU B . n A 1 134 GLY 134 275 275 GLY GLY B . n A 1 135 ILE 135 276 276 ILE ILE B . n A 1 136 PRO 136 277 277 PRO PRO B . n A 1 137 ILE 137 278 278 ILE ILE B . n A 1 138 SER 138 279 279 SER SER B . n A 1 139 VAL 139 280 280 VAL VAL B . n A 1 140 GLU 140 281 281 GLU GLU B . n A 1 141 ASP 141 282 282 ASP ASP B . n A 1 142 SER 142 283 283 SER SER B . n A 1 143 VAL 143 284 284 VAL VAL B . n A 1 144 PHE 144 285 285 PHE PHE B . n A 1 145 VAL 145 286 286 VAL VAL B . n A 1 146 GLY 146 287 287 GLY GLY B . n A 1 147 ASP 147 288 288 ASP ASP B . n A 1 148 ALA 148 289 289 ALA ALA B . n A 1 149 ALA 149 290 290 ALA ALA B . n A 1 150 GLY 150 291 291 GLY GLY B . n A 1 151 ARG 151 292 292 ARG ARG B . n A 1 152 LEU 152 293 293 LEU LEU B . n A 1 153 ALA 153 294 294 ALA ALA B . n A 1 154 ASN 154 295 295 ASN ASN B . n A 1 155 TRP 155 296 296 TRP TRP B . n A 1 156 ALA 156 297 297 ALA ALA B . n A 1 157 PRO 157 298 298 PRO PRO B . n A 1 158 GLY 158 299 299 GLY GLY B . n A 1 159 ARG 159 300 300 ARG ARG B . n A 1 160 LYS 160 301 301 LYS LYS B . n A 1 161 LYS 161 302 302 LYS LYS B . n A 1 162 LYS 162 303 303 LYS LYS B . n A 1 163 ASP 163 304 304 ASP ASP B . n A 1 164 PHE 164 305 305 PHE PHE B . n A 1 165 SER 165 306 306 SER SER B . n A 1 166 CYS 166 307 307 CYS CYS B . n A 1 167 ALA 167 308 308 ALA ALA B . n A 1 168 ASP 168 309 309 ASP ASP B . n A 1 169 ARG 169 310 310 ARG ARG B . n A 1 170 LEU 170 311 311 LEU LEU B . n A 1 171 PHE 171 312 312 PHE PHE B . n A 1 172 ALA 172 313 313 ALA ALA B . n A 1 173 LEU 173 314 314 LEU LEU B . n A 1 174 ASN 174 315 315 ASN ASN B . n A 1 175 VAL 175 316 316 VAL VAL B . n A 1 176 GLY 176 317 317 GLY GLY B . n A 1 177 LEU 177 318 318 LEU LEU B . n A 1 178 PRO 178 319 319 PRO PRO B . n A 1 179 PHE 179 320 320 PHE PHE B . n A 1 180 ALA 180 321 321 ALA ALA B . n A 1 181 THR 181 322 322 THR THR B . n A 1 182 PRO 182 323 323 PRO PRO B . n A 1 183 GLU 183 324 324 GLU GLU B . n A 1 184 GLU 184 325 325 GLU GLU B . n A 1 185 PHE 185 326 326 PHE PHE B . n A 1 186 PHE 186 327 327 PHE PHE B . n A 1 187 LEU 187 328 328 LEU LEU B . n A 1 188 LYS 188 329 329 LYS LYS B . n A 1 189 TRP 189 330 330 TRP TRP B . n A 1 190 PRO 190 331 331 PRO PRO B . n A 1 191 ALA 191 332 332 ALA ALA B . n A 1 192 ALA 192 333 333 ALA ALA B . n A 1 193 ARG 193 334 334 ARG ARG B . n A 1 194 PHE 194 335 335 PHE PHE B . n A 1 195 GLU 195 336 336 GLU GLU B . n A 1 196 LEU 196 337 337 LEU LEU B . n A 1 197 PRO 197 338 338 PRO PRO B . n A 1 198 ALA 198 339 339 ALA ALA B . n A 1 199 PHE 199 340 340 PHE PHE B . n A 1 200 ASP 200 341 341 ASP ASP B . n A 1 201 PRO 201 342 342 PRO PRO B . n A 1 202 ARG 202 343 343 ARG ARG B . n A 1 203 THR 203 344 344 THR THR B . n A 1 204 ILE 204 345 345 ILE ILE B . n A 1 205 SER 205 346 346 SER SER B . n A 1 206 SER 206 347 347 SER SER B . n A 1 207 ALA 207 348 348 ALA ALA B . n A 1 208 GLY 208 349 349 GLY GLY B . n A 1 209 PRO 209 350 350 PRO PRO B . n A 1 210 LEU 210 351 351 LEU LEU B . n A 1 211 TYR 211 352 352 TYR TYR B . n A 1 212 LEU 212 353 353 LEU LEU B . n A 1 213 PRO 213 354 354 PRO PRO B . n A 1 214 GLU 214 355 355 GLU GLU B . n A 1 215 SER 215 356 356 SER SER B . n A 1 216 SER 216 357 357 SER SER B . n A 1 217 SER 217 358 358 SER SER B . n A 1 218 LEU 218 359 359 LEU LEU B . n A 1 219 LEU 219 360 360 LEU LEU B . n A 1 220 SER 220 361 361 SER SER B . n A 1 221 PRO 221 362 362 PRO PRO B . n A 1 222 ASN 222 363 363 ASN ASN B . n A 1 223 PRO 223 364 364 PRO PRO B . n A 1 224 GLU 224 365 365 GLU GLU B . n A 1 225 VAL 225 366 366 VAL VAL B . n A 1 226 VAL 226 367 367 VAL VAL B . n A 1 227 VAL 227 368 368 VAL VAL B . n A 1 228 ALA 228 369 369 ALA ALA B . n A 1 229 VAL 229 370 370 VAL VAL B . n A 1 230 GLY 230 371 371 GLY GLY B . n A 1 231 PHE 231 372 372 PHE PHE B . n A 1 232 PRO 232 373 373 PRO PRO B . n A 1 233 GLY 233 374 374 GLY GLY B . n A 1 234 ALA 234 375 375 ALA ALA B . n A 1 235 GLY 235 376 376 GLY GLY B . n A 1 236 LYS 236 377 377 LYS LYS B . n A 1 237 SER 237 378 378 SER SER B . n A 1 238 THR 238 379 379 THR THR B . n A 1 239 PHE 239 380 380 PHE PHE B . n A 1 240 ILE 240 381 381 ILE ILE B . n A 1 241 GLN 241 382 382 GLN GLN B . n A 1 242 GLU 242 383 383 GLU GLU B . n A 1 243 HIS 243 384 384 HIS HIS B . n A 1 244 LEU 244 385 385 LEU LEU B . n A 1 245 VAL 245 386 386 VAL VAL B . n A 1 246 SER 246 387 387 SER SER B . n A 1 247 ALA 247 388 388 ALA ALA B . n A 1 248 GLY 248 389 389 GLY GLY B . n A 1 249 TYR 249 390 390 TYR TYR B . n A 1 250 VAL 250 391 391 VAL VAL B . n A 1 251 HIS 251 392 392 HIS HIS B . n A 1 252 VAL 252 393 393 VAL VAL B . n A 1 253 ASN 253 394 394 ASN ASN B . n A 1 254 ARG 254 395 395 ARG ARG B . n A 1 255 ASP 255 396 396 ASP ASP B . n A 1 256 THR 256 397 397 THR THR B . n A 1 257 LEU 257 398 398 LEU LEU B . n A 1 258 GLY 258 399 ? ? ? B . n A 1 259 SER 259 400 ? ? ? B . n A 1 260 TRP 260 401 ? ? ? B . n A 1 261 GLN 261 402 ? ? ? B . n A 1 262 ARG 262 403 ? ? ? B . n A 1 263 CYS 263 404 404 CYS CYS B . n A 1 264 VAL 264 405 405 VAL VAL B . n A 1 265 SER 265 406 406 SER SER B . n A 1 266 SER 266 407 407 SER SER B . n A 1 267 CYS 267 408 408 CYS CYS B . n A 1 268 GLN 268 409 409 GLN GLN B . n A 1 269 ALA 269 410 410 ALA ALA B . n A 1 270 ALA 270 411 411 ALA ALA B . n A 1 271 LEU 271 412 412 LEU LEU B . n A 1 272 ARG 272 413 413 ARG ARG B . n A 1 273 GLN 273 414 414 GLN GLN B . n A 1 274 GLY 274 415 415 GLY GLY B . n A 1 275 LYS 275 416 416 LYS LYS B . n A 1 276 ARG 276 417 417 ARG ARG B . n A 1 277 VAL 277 418 418 VAL VAL B . n A 1 278 VAL 278 419 419 VAL VAL B . n A 1 279 ILE 279 420 420 ILE ILE B . n A 1 280 ASP 280 421 421 ASP ASP B . n A 1 281 ASN 281 422 422 ASN ASN B . n A 1 282 THR 282 423 423 THR THR B . n A 1 283 ASN 283 424 424 ASN ASN B . n A 1 284 PRO 284 425 425 PRO PRO B . n A 1 285 ASP 285 426 426 ASP ASP B . n A 1 286 VAL 286 427 427 VAL VAL B . n A 1 287 PRO 287 428 428 PRO PRO B . n A 1 288 SER 288 429 429 SER SER B . n A 1 289 ARG 289 430 430 ARG ARG B . n A 1 290 ALA 290 431 431 ALA ALA B . n A 1 291 ARG 291 432 432 ARG ARG B . n A 1 292 TYR 292 433 433 TYR TYR B . n A 1 293 ILE 293 434 434 ILE ILE B . n A 1 294 GLN 294 435 435 GLN GLN B . n A 1 295 CYS 295 436 436 CYS CYS B . n A 1 296 ALA 296 437 437 ALA ALA B . n A 1 297 LYS 297 438 438 LYS LYS B . n A 1 298 ASP 298 439 439 ASP ASP B . n A 1 299 ALA 299 440 440 ALA ALA B . n A 1 300 GLY 300 441 441 GLY GLY B . n A 1 301 VAL 301 442 442 VAL VAL B . n A 1 302 PRO 302 443 443 PRO PRO B . n A 1 303 CYS 303 444 444 CYS CYS B . n A 1 304 ARG 304 445 445 ARG ARG B . n A 1 305 CYS 305 446 446 CYS CYS B . n A 1 306 PHE 306 447 447 PHE PHE B . n A 1 307 ASN 307 448 448 ASN ASN B . n A 1 308 PHE 308 449 449 PHE PHE B . n A 1 309 CSO 309 450 450 CSO CSO B . n A 1 310 ALA 310 451 451 ALA ALA B . n A 1 311 THR 311 452 452 THR THR B . n A 1 312 ILE 312 453 453 ILE ILE B . n A 1 313 GLU 313 454 454 GLU GLU B . n A 1 314 GLN 314 455 455 GLN GLN B . n A 1 315 ALA 315 456 456 ALA ALA B . n A 1 316 ARG 316 457 457 ARG ARG B . n A 1 317 HIS 317 458 458 HIS HIS B . n A 1 318 ASN 318 459 459 ASN ASN B . n A 1 319 ASN 319 460 460 ASN ASN B . n A 1 320 ARG 320 461 461 ARG ARG B . n A 1 321 PHE 321 462 462 PHE PHE B . n A 1 322 ARG 322 463 463 ARG ARG B . n A 1 323 GLU 323 464 464 GLU GLU B . n A 1 324 MSE 324 465 465 MSE MSE B . n A 1 325 THR 325 466 466 THR THR B . n A 1 326 ASP 326 467 467 ASP ASP B . n A 1 327 PRO 327 468 468 PRO PRO B . n A 1 328 SER 328 469 469 SER SER B . n A 1 329 HIS 329 470 470 HIS HIS B . n A 1 330 ALA 330 471 471 ALA ALA B . n A 1 331 PRO 331 472 472 PRO PRO B . n A 1 332 VAL 332 473 473 VAL VAL B . n A 1 333 SER 333 474 474 SER SER B . n A 1 334 ASP 334 475 475 ASP ASP B . n A 1 335 MSE 335 476 476 MSE MSE B . n A 1 336 VAL 336 477 477 VAL VAL B . n A 1 337 MSE 337 478 478 MSE MSE B . n A 1 338 PHE 338 479 479 PHE PHE B . n A 1 339 SER 339 480 480 SER SER B . n A 1 340 TYR 340 481 481 TYR TYR B . n A 1 341 ARG 341 482 482 ARG ARG B . n A 1 342 LYS 342 483 483 LYS LYS B . n A 1 343 GLN 343 484 484 GLN GLN B . n A 1 344 PHE 344 485 485 PHE PHE B . n A 1 345 GLU 345 486 486 GLU GLU B . n A 1 346 PRO 346 487 487 PRO PRO B . n A 1 347 PRO 347 488 488 PRO PRO B . n A 1 348 THR 348 489 489 THR THR B . n A 1 349 LEU 349 490 490 LEU LEU B . n A 1 350 ALA 350 491 491 ALA ALA B . n A 1 351 GLU 351 492 492 GLU GLU B . n A 1 352 GLY 352 493 493 GLY GLY B . n A 1 353 PHE 353 494 494 PHE PHE B . n A 1 354 LEU 354 495 495 LEU LEU B . n A 1 355 GLU 355 496 496 GLU GLU B . n A 1 356 ILE 356 497 497 ILE ILE B . n A 1 357 LEU 357 498 498 LEU LEU B . n A 1 358 GLU 358 499 499 GLU GLU B . n A 1 359 ILE 359 500 500 ILE ILE B . n A 1 360 PRO 360 501 501 PRO PRO B . n A 1 361 PHE 361 502 502 PHE PHE B . n A 1 362 ARG 362 503 503 ARG ARG B . n A 1 363 LEU 363 504 504 LEU LEU B . n A 1 364 GLN 364 505 505 GLN GLN B . n A 1 365 GLU 365 506 ? ? ? B . n A 1 366 HIS 366 507 507 HIS HIS B . n A 1 367 LEU 367 508 508 LEU LEU B . n A 1 368 ASP 368 509 509 ASP ASP B . n A 1 369 PRO 369 510 510 PRO PRO B . n A 1 370 ALA 370 511 511 ALA ALA B . n A 1 371 LEU 371 512 512 LEU LEU B . n A 1 372 GLN 372 513 513 GLN GLN B . n A 1 373 ARG 373 514 514 ARG ARG B . n A 1 374 LEU 374 515 515 LEU LEU B . n A 1 375 TYR 375 516 516 TYR TYR B . n A 1 376 ARG 376 517 517 ARG ARG B . n A 1 377 GLN 377 518 518 GLN GLN B . n A 1 378 PHE 378 519 519 PHE PHE B . n A 1 379 SER 379 520 520 SER SER B . n A 1 380 GLU 380 521 521 GLU GLU B . n A 1 381 GLY 381 522 522 GLY GLY B . n B 2 1 DT 1 523 ? ? ? X . n B 2 2 DC 2 524 ? ? ? X . n B 2 3 DC 3 525 ? ? ? X . n B 2 4 DT 4 526 401 DT DT X . n B 2 5 DT 5 527 402 DT DT X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1 1 GOL GOL B . D 3 GOL 1 2 2 GOL GOL B . E 3 GOL 1 529 221 GOL GOL B . F 3 GOL 1 530 221 GOL GOL B . G 3 GOL 1 531 221 GOL GOL B . H 4 MG 1 532 1 MG MG B . I 5 PO4 1 528 403 PO4 PO4 X . J 6 HOH 1 3 3 HOH HOH B . J 6 HOH 2 4 4 HOH HOH B . J 6 HOH 3 5 5 HOH HOH B . J 6 HOH 4 6 6 HOH HOH B . J 6 HOH 5 7 7 HOH HOH B . J 6 HOH 6 8 8 HOH HOH B . J 6 HOH 7 9 9 HOH HOH B . J 6 HOH 8 10 10 HOH HOH B . J 6 HOH 9 11 11 HOH HOH B . J 6 HOH 10 12 12 HOH HOH B . J 6 HOH 11 13 13 HOH HOH B . J 6 HOH 12 14 14 HOH HOH B . J 6 HOH 13 15 15 HOH HOH B . J 6 HOH 14 16 16 HOH HOH B . J 6 HOH 15 17 17 HOH HOH B . J 6 HOH 16 18 18 HOH HOH B . J 6 HOH 17 19 19 HOH HOH B . J 6 HOH 18 20 20 HOH HOH B . J 6 HOH 19 21 21 HOH HOH B . J 6 HOH 20 22 22 HOH HOH B . J 6 HOH 21 23 23 HOH HOH B . J 6 HOH 22 24 24 HOH HOH B . J 6 HOH 23 25 25 HOH HOH B . J 6 HOH 24 26 26 HOH HOH B . J 6 HOH 25 27 27 HOH HOH B . J 6 HOH 26 28 28 HOH HOH B . J 6 HOH 27 29 29 HOH HOH B . J 6 HOH 28 30 30 HOH HOH B . J 6 HOH 29 31 31 HOH HOH B . J 6 HOH 30 32 32 HOH HOH B . J 6 HOH 31 33 33 HOH HOH B . J 6 HOH 32 34 34 HOH HOH B . J 6 HOH 33 35 35 HOH HOH B . J 6 HOH 34 36 36 HOH HOH B . J 6 HOH 35 37 37 HOH HOH B . J 6 HOH 36 38 38 HOH HOH B . J 6 HOH 37 39 39 HOH HOH B . J 6 HOH 38 40 40 HOH HOH B . J 6 HOH 39 41 41 HOH HOH B . J 6 HOH 40 42 42 HOH HOH B . J 6 HOH 41 43 43 HOH HOH B . J 6 HOH 42 44 44 HOH HOH B . J 6 HOH 43 45 45 HOH HOH B . J 6 HOH 44 47 47 HOH HOH B . J 6 HOH 45 48 48 HOH HOH B . J 6 HOH 46 49 49 HOH HOH B . J 6 HOH 47 50 50 HOH HOH B . J 6 HOH 48 51 51 HOH HOH B . J 6 HOH 49 52 52 HOH HOH B . J 6 HOH 50 53 53 HOH HOH B . J 6 HOH 51 54 54 HOH HOH B . J 6 HOH 52 55 55 HOH HOH B . J 6 HOH 53 56 56 HOH HOH B . J 6 HOH 54 57 57 HOH HOH B . J 6 HOH 55 58 58 HOH HOH B . J 6 HOH 56 59 59 HOH HOH B . J 6 HOH 57 60 60 HOH HOH B . J 6 HOH 58 61 61 HOH HOH B . J 6 HOH 59 62 62 HOH HOH B . J 6 HOH 60 63 63 HOH HOH B . J 6 HOH 61 64 64 HOH HOH B . J 6 HOH 62 65 65 HOH HOH B . J 6 HOH 63 66 66 HOH HOH B . J 6 HOH 64 67 67 HOH HOH B . J 6 HOH 65 68 68 HOH HOH B . J 6 HOH 66 69 69 HOH HOH B . J 6 HOH 67 70 70 HOH HOH B . J 6 HOH 68 71 71 HOH HOH B . J 6 HOH 69 72 72 HOH HOH B . J 6 HOH 70 73 73 HOH HOH B . J 6 HOH 71 74 74 HOH HOH B . J 6 HOH 72 75 75 HOH HOH B . J 6 HOH 73 76 76 HOH HOH B . J 6 HOH 74 77 77 HOH HOH B . J 6 HOH 75 78 78 HOH HOH B . J 6 HOH 76 79 79 HOH HOH B . J 6 HOH 77 80 80 HOH HOH B . J 6 HOH 78 81 81 HOH HOH B . J 6 HOH 79 82 82 HOH HOH B . J 6 HOH 80 83 83 HOH HOH B . J 6 HOH 81 84 84 HOH HOH B . J 6 HOH 82 85 85 HOH HOH B . J 6 HOH 83 86 86 HOH HOH B . J 6 HOH 84 87 87 HOH HOH B . J 6 HOH 85 88 88 HOH HOH B . J 6 HOH 86 89 89 HOH HOH B . J 6 HOH 87 90 90 HOH HOH B . J 6 HOH 88 91 91 HOH HOH B . J 6 HOH 89 92 92 HOH HOH B . J 6 HOH 90 93 93 HOH HOH B . J 6 HOH 91 94 94 HOH HOH B . J 6 HOH 92 95 95 HOH HOH B . J 6 HOH 93 96 96 HOH HOH B . J 6 HOH 94 97 97 HOH HOH B . J 6 HOH 95 98 98 HOH HOH B . J 6 HOH 96 99 99 HOH HOH B . J 6 HOH 97 100 100 HOH HOH B . J 6 HOH 98 101 101 HOH HOH B . J 6 HOH 99 102 102 HOH HOH B . J 6 HOH 100 103 103 HOH HOH B . J 6 HOH 101 104 104 HOH HOH B . J 6 HOH 102 105 105 HOH HOH B . J 6 HOH 103 106 106 HOH HOH B . J 6 HOH 104 107 107 HOH HOH B . J 6 HOH 105 108 108 HOH HOH B . J 6 HOH 106 109 109 HOH HOH B . J 6 HOH 107 110 110 HOH HOH B . J 6 HOH 108 111 111 HOH HOH B . J 6 HOH 109 112 112 HOH HOH B . J 6 HOH 110 113 113 HOH HOH B . J 6 HOH 111 114 114 HOH HOH B . J 6 HOH 112 115 115 HOH HOH B . J 6 HOH 113 116 116 HOH HOH B . J 6 HOH 114 117 117 HOH HOH B . J 6 HOH 115 118 118 HOH HOH B . J 6 HOH 116 119 119 HOH HOH B . J 6 HOH 117 120 120 HOH HOH B . J 6 HOH 118 121 121 HOH HOH B . J 6 HOH 119 122 122 HOH HOH B . J 6 HOH 120 123 123 HOH HOH B . J 6 HOH 121 124 124 HOH HOH B . J 6 HOH 122 125 125 HOH HOH B . J 6 HOH 123 127 127 HOH HOH B . J 6 HOH 124 128 128 HOH HOH B . J 6 HOH 125 129 129 HOH HOH B . J 6 HOH 126 130 130 HOH HOH B . J 6 HOH 127 131 131 HOH HOH B . J 6 HOH 128 132 132 HOH HOH B . J 6 HOH 129 133 133 HOH HOH B . J 6 HOH 130 134 134 HOH HOH B . J 6 HOH 131 135 135 HOH HOH B . J 6 HOH 132 136 136 HOH HOH B . J 6 HOH 133 137 137 HOH HOH B . J 6 HOH 134 138 138 HOH HOH B . J 6 HOH 135 139 139 HOH HOH B . J 6 HOH 136 140 140 HOH HOH B . J 6 HOH 137 141 141 HOH HOH B . J 6 HOH 138 533 143 HOH HOH B . J 6 HOH 139 534 144 HOH HOH B . J 6 HOH 140 535 145 HOH HOH B . J 6 HOH 141 536 146 HOH HOH B . J 6 HOH 142 537 147 HOH HOH B . J 6 HOH 143 538 148 HOH HOH B . J 6 HOH 144 539 149 HOH HOH B . J 6 HOH 145 540 150 HOH HOH B . J 6 HOH 146 541 151 HOH HOH B . J 6 HOH 147 542 153 HOH HOH B . J 6 HOH 148 543 154 HOH HOH B . J 6 HOH 149 544 155 HOH HOH B . J 6 HOH 150 545 157 HOH HOH B . J 6 HOH 151 546 158 HOH HOH B . J 6 HOH 152 547 159 HOH HOH B . J 6 HOH 153 548 160 HOH HOH B . J 6 HOH 154 549 161 HOH HOH B . J 6 HOH 155 550 162 HOH HOH B . J 6 HOH 156 551 163 HOH HOH B . J 6 HOH 157 552 164 HOH HOH B . J 6 HOH 158 553 165 HOH HOH B . J 6 HOH 159 554 166 HOH HOH B . J 6 HOH 160 555 167 HOH HOH B . J 6 HOH 161 556 168 HOH HOH B . J 6 HOH 162 557 169 HOH HOH B . J 6 HOH 163 558 170 HOH HOH B . J 6 HOH 164 559 171 HOH HOH B . J 6 HOH 165 560 172 HOH HOH B . J 6 HOH 166 561 173 HOH HOH B . J 6 HOH 167 562 174 HOH HOH B . J 6 HOH 168 563 175 HOH HOH B . J 6 HOH 169 564 176 HOH HOH B . J 6 HOH 170 565 177 HOH HOH B . J 6 HOH 171 566 178 HOH HOH B . J 6 HOH 172 567 179 HOH HOH B . J 6 HOH 173 568 180 HOH HOH B . J 6 HOH 174 569 181 HOH HOH B . J 6 HOH 175 570 182 HOH HOH B . J 6 HOH 176 571 184 HOH HOH B . J 6 HOH 177 572 185 HOH HOH B . J 6 HOH 178 573 186 HOH HOH B . J 6 HOH 179 574 187 HOH HOH B . J 6 HOH 180 575 188 HOH HOH B . J 6 HOH 181 576 189 HOH HOH B . J 6 HOH 182 577 190 HOH HOH B . J 6 HOH 183 578 191 HOH HOH B . J 6 HOH 184 579 192 HOH HOH B . J 6 HOH 185 580 193 HOH HOH B . J 6 HOH 186 581 194 HOH HOH B . J 6 HOH 187 582 195 HOH HOH B . J 6 HOH 188 583 196 HOH HOH B . J 6 HOH 189 584 197 HOH HOH B . J 6 HOH 190 585 198 HOH HOH B . J 6 HOH 191 586 199 HOH HOH B . J 6 HOH 192 587 200 HOH HOH B . J 6 HOH 193 588 201 HOH HOH B . J 6 HOH 194 589 202 HOH HOH B . J 6 HOH 195 590 203 HOH HOH B . J 6 HOH 196 591 204 HOH HOH B . J 6 HOH 197 592 205 HOH HOH B . J 6 HOH 198 593 206 HOH HOH B . J 6 HOH 199 594 207 HOH HOH B . J 6 HOH 200 595 208 HOH HOH B . J 6 HOH 201 596 209 HOH HOH B . J 6 HOH 202 597 210 HOH HOH B . J 6 HOH 203 598 211 HOH HOH B . J 6 HOH 204 599 212 HOH HOH B . J 6 HOH 205 600 213 HOH HOH B . J 6 HOH 206 601 214 HOH HOH B . J 6 HOH 207 602 215 HOH HOH B . J 6 HOH 208 603 216 HOH HOH B . J 6 HOH 209 604 217 HOH HOH B . J 6 HOH 210 605 218 HOH HOH B . J 6 HOH 211 606 219 HOH HOH B . J 6 HOH 212 607 220 HOH HOH B . J 6 HOH 213 608 222 HOH HOH B . J 6 HOH 214 609 223 HOH HOH B . J 6 HOH 215 610 225 HOH HOH B . J 6 HOH 216 611 226 HOH HOH B . J 6 HOH 217 612 227 HOH HOH B . J 6 HOH 218 613 229 HOH HOH B . J 6 HOH 219 614 230 HOH HOH B . J 6 HOH 220 615 231 HOH HOH B . J 6 HOH 221 616 232 HOH HOH B . J 6 HOH 222 617 233 HOH HOH B . J 6 HOH 223 618 234 HOH HOH B . J 6 HOH 224 619 235 HOH HOH B . J 6 HOH 225 620 236 HOH HOH B . J 6 HOH 226 621 237 HOH HOH B . J 6 HOH 227 622 238 HOH HOH B . J 6 HOH 228 623 239 HOH HOH B . J 6 HOH 229 624 240 HOH HOH B . J 6 HOH 230 625 1 HOH HOH B . J 6 HOH 231 626 2 HOH HOH B . J 6 HOH 232 627 142 HOH HOH B . K 6 HOH 1 46 46 HOH HOH X . K 6 HOH 2 126 126 HOH HOH X . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 78 B MSE 219 ? MET SELENOMETHIONINE 2 A MSE 123 B MSE 264 ? MET SELENOMETHIONINE 3 A CSO 309 B CSO 450 ? CYS S-HYDROXYCYSTEINE 4 A MSE 324 B MSE 465 ? MET SELENOMETHIONINE 5 A MSE 335 B MSE 476 ? MET SELENOMETHIONINE 6 A MSE 337 B MSE 478 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? I PO4 . ? X PO4 528 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 OD1 ? A ASP 147 ? B ASP 288 ? 1_555 152.7 ? 2 O1 ? I PO4 . ? X PO4 528 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? A ASP 31 ? B ASP 172 ? 1_555 87.9 ? 3 OD1 ? A ASP 147 ? B ASP 288 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? A ASP 31 ? B ASP 172 ? 1_555 80.6 ? 4 O1 ? I PO4 . ? X PO4 528 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? J HOH . ? B HOH 617 ? 1_555 106.0 ? 5 OD1 ? A ASP 147 ? B ASP 288 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? J HOH . ? B HOH 617 ? 1_555 96.8 ? 6 O ? A ASP 31 ? B ASP 172 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? J HOH . ? B HOH 617 ? 1_555 81.9 ? 7 O1 ? I PO4 . ? X PO4 528 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? J HOH . ? B HOH 27 ? 1_555 90.3 ? 8 OD1 ? A ASP 147 ? B ASP 288 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? J HOH . ? B HOH 27 ? 1_555 100.3 ? 9 O ? A ASP 31 ? B ASP 172 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? J HOH . ? B HOH 27 ? 1_555 177.6 ? 10 O ? J HOH . ? B HOH 617 ? 1_555 MG ? H MG . ? B MG 532 ? 1_555 O ? J HOH . ? B HOH 27 ? 1_555 100.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-14 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' citation_author 3 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_abbrev' 2 3 'Structure model' '_citation.pdbx_database_id_DOI' 3 3 'Structure model' '_citation.pdbx_database_id_PubMed' 4 3 'Structure model' '_citation_author.name' 5 3 'Structure model' '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 2.4843 -16.1367 48.5908 0.0750 0.0605 0.0706 -0.0021 0.0017 -0.0126 1.2839 0.9291 1.1297 0.2290 -0.0942 -0.1470 0.0553 -0.0093 -0.0513 -0.0957 -0.0394 -0.0473 0.0893 0.1129 -0.0531 'X-RAY DIFFRACTION' 2 ? refined 9.4710 -24.5313 47.3743 0.1757 0.1236 0.1522 0.0184 -0.0176 0.0215 1.8527 2.4434 1.9963 -0.9135 -0.6474 0.9124 0.0319 -0.1067 0.0932 -0.1818 -0.0541 -0.1882 0.0270 0.2248 0.2772 'X-RAY DIFFRACTION' 3 ? refined 4.5650 -11.3377 38.6125 0.0755 0.0778 0.0874 0.0047 -0.0052 -0.0136 1.2188 1.3341 1.0223 -0.1155 -0.7136 -0.5760 0.0292 -0.0079 -0.0172 -0.0492 0.0397 -0.0747 0.0504 0.0061 0.0733 'X-RAY DIFFRACTION' 4 ? refined 7.8021 -0.2771 41.9183 0.1887 0.0289 0.2152 -0.0513 0.0094 -0.0356 0.3607 0.3091 1.9482 0.0975 -0.4940 -0.0738 0.0984 -0.1340 0.0031 -0.3265 0.2614 -0.1847 -0.0639 -0.7076 0.3474 'X-RAY DIFFRACTION' 5 ? refined 20.7444 -8.1414 5.7472 0.1651 0.2032 0.1802 0.0441 0.0140 -0.0105 0.2535 -0.0696 1.5548 0.0148 -0.7730 -0.0827 0.0422 0.1565 -0.0891 0.1648 0.0738 0.1247 0.0423 -0.1004 -0.2682 'X-RAY DIFFRACTION' 6 ? refined 29.6934 -14.2513 7.2574 0.1735 0.2003 0.1480 0.0181 0.0075 -0.0492 0.5730 0.2302 1.3857 0.2686 -0.4937 -0.5818 -0.1362 0.0625 0.0128 -0.1139 -0.1639 -0.0592 0.0193 0.2177 0.3409 'X-RAY DIFFRACTION' 7 ? refined 26.4625 -15.4846 22.4925 0.2061 0.3189 0.1945 0.0115 -0.0115 -0.0608 1.9112 2.1426 1.1163 0.5565 -0.4495 -0.2425 -0.0045 0.0992 -0.0165 -0.1367 -0.1615 0.0407 0.4773 -0.0340 0.5731 'X-RAY DIFFRACTION' 8 ? refined 18.6595 -7.0383 13.9630 0.2239 0.1945 0.1402 -0.0275 -0.0107 -0.0194 1.2333 0.5023 1.3537 0.1788 -1.1582 -0.5804 -0.0031 0.1909 -0.0708 0.1823 0.1576 0.0842 -0.1366 -0.2118 -0.0545 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 B 144 B 217 ;chain 'B' and (resseq 144:217) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 218 B 242 ;chain 'B' and (resseq 218:242) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 243 B 316 ;chain 'B' and (resseq 243:316) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 317 B 341 ;chain 'B' and (resseq 317:341) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 342 B 384 ;chain 'B' and (resseq 342:384) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 385 B 466 ;chain 'B' and (resseq 385:466) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 467 B 484 ;chain 'B' and (resseq 467:484) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 485 B 522 ;chain 'B' and (resseq 485:522) ; ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 612 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 614 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU B 171 ? ? -99.69 -73.42 2 1 ASN B 295 ? ? 82.04 7.96 3 1 TRP B 296 ? ? -51.38 -0.02 4 1 ARG B 300 ? ? -106.02 53.70 5 1 ARG B 395 ? ? -39.98 -35.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B PHE 184 ? CG ? A PHE 43 CG 2 1 Y 1 B PHE 184 ? CD1 ? A PHE 43 CD1 3 1 Y 1 B PHE 184 ? CD2 ? A PHE 43 CD2 4 1 Y 1 B PHE 184 ? CE1 ? A PHE 43 CE1 5 1 Y 1 B PHE 184 ? CE2 ? A PHE 43 CE2 6 1 Y 1 B PHE 184 ? CZ ? A PHE 43 CZ 7 1 Y 1 B ARG 300 ? CG ? A ARG 159 CG 8 1 Y 1 B ARG 300 ? CD ? A ARG 159 CD 9 1 Y 1 B ARG 300 ? NE ? A ARG 159 NE 10 1 Y 1 B ARG 300 ? CZ ? A ARG 159 CZ 11 1 Y 1 B ARG 300 ? NH1 ? A ARG 159 NH1 12 1 Y 1 B ARG 300 ? NH2 ? A ARG 159 NH2 13 1 Y 1 B LYS 301 ? CG ? A LYS 160 CG 14 1 Y 1 B LYS 301 ? CD ? A LYS 160 CD 15 1 Y 1 B LYS 301 ? CE ? A LYS 160 CE 16 1 Y 1 B LYS 301 ? NZ ? A LYS 160 NZ 17 1 Y 1 B LYS 302 ? CG ? A LYS 161 CG 18 1 Y 1 B LYS 302 ? CD ? A LYS 161 CD 19 1 Y 1 B LYS 302 ? CE ? A LYS 161 CE 20 1 Y 1 B LYS 302 ? NZ ? A LYS 161 NZ 21 1 Y 1 B ARG 395 ? CG ? A ARG 254 CG 22 1 Y 1 B ARG 395 ? CD ? A ARG 254 CD 23 1 Y 1 B ARG 395 ? NE ? A ARG 254 NE 24 1 Y 1 B ARG 395 ? CZ ? A ARG 254 CZ 25 1 Y 1 B ARG 395 ? NH1 ? A ARG 254 NH1 26 1 Y 1 B ARG 395 ? NH2 ? A ARG 254 NH2 27 1 Y 1 B HIS 507 ? CG ? A HIS 366 CG 28 1 Y 1 B HIS 507 ? ND1 ? A HIS 366 ND1 29 1 Y 1 B HIS 507 ? CD2 ? A HIS 366 CD2 30 1 Y 1 B HIS 507 ? CE1 ? A HIS 366 CE1 31 1 Y 1 B HIS 507 ? NE2 ? A HIS 366 NE2 32 1 Y 1 X DT 526 ? P ? B DT 4 P 33 1 Y 1 X DT 526 ? OP1 ? B DT 4 OP1 34 1 Y 1 X DT 526 ? OP2 ? B DT 4 OP2 35 1 Y 1 X DT 526 ? N1 ? B DT 4 N1 36 1 Y 1 X DT 526 ? C2 ? B DT 4 C2 37 1 Y 1 X DT 526 ? O2 ? B DT 4 O2 38 1 Y 1 X DT 526 ? N3 ? B DT 4 N3 39 1 Y 1 X DT 526 ? C4 ? B DT 4 C4 40 1 Y 1 X DT 526 ? O4 ? B DT 4 O4 41 1 Y 1 X DT 526 ? C5 ? B DT 4 C5 42 1 Y 1 X DT 526 ? C7 ? B DT 4 C7 43 1 Y 1 X DT 526 ? C6 ? B DT 4 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 399 ? A GLY 258 2 1 Y 1 B SER 400 ? A SER 259 3 1 Y 1 B TRP 401 ? A TRP 260 4 1 Y 1 B GLN 402 ? A GLN 261 5 1 Y 1 B ARG 403 ? A ARG 262 6 1 Y 1 B GLU 506 ? A GLU 365 7 1 Y 1 X DT 523 ? B DT 1 8 1 Y 1 X DC 524 ? B DC 2 9 1 Y 1 X DC 525 ? B DC 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 'MAGNESIUM ION' MG 5 'PHOSPHATE ION' PO4 6 water HOH #