HEADER METAL BINDING PROTEIN 14-OCT-11 3U7Z TITLE CRYSTAL STRUCTURE OF A PUTATIVE METAL BINDING PROTEIN RUMGNA_00854 TITLE 2 (ZP_02040092.1) FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 1.30 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METAL BINDING PROTEIN RUMGNA_00854; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS GNAVUS; SOURCE 3 ORGANISM_COMMON: TBD; SOURCE 4 ORGANISM_TAXID: 411470; SOURCE 5 STRAIN: ATCC 29149; SOURCE 6 GENE: RUMGNA_00854; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS THE BINDING PROTEIN, TRANSPORT PROTEIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-BIOLOGY, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 20-SEP-23 3U7Z 1 REMARK REVDAT 5 01-FEB-23 3U7Z 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 3U7Z 1 JRNL REVDAT 3 08-NOV-17 3U7Z 1 REMARK REVDAT 2 16-NOV-11 3U7Z 1 KEYWDS REVDAT 1 02-NOV-11 3U7Z 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE METAL BINDING PROTEIN JRNL TITL 2 RUMGNA_00854 (ZP_02040092.1) FROM RUMINOCOCCUS GNAVUS ATCC JRNL TITL 3 29149 AT 1.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 36769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2526 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : -0.14000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.805 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1655 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1060 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2258 ; 1.714 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2634 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 5.936 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;39.664 ;27.634 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;11.339 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1912 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 296 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 997 ; 2.731 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 417 ; 1.673 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1629 ; 3.902 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 658 ; 4.807 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 615 ; 6.877 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2715 ; 2.177 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 186 ; 9.434 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2681 ; 4.225 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. ETHYLENE GLYCOL, CALCIUM MODELED IS REMARK 3 PRESENT IN CRYO/CRYSTALLIZATION CONDITIONS. 2. THERE IS SOME REMARK 3 UNEXPLAINED,UNUSUAL DENSITY BETWEEN THE CYS100/SG AND LYS128/NZ. REMARK 3 3. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 3U7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.504 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : 0.58900 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BB6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34.0% POLYETHYLENE GLYCOL 400, 0.20M REMARK 280 CALCIUM ACETATE, 0.1M HEPES PH 7.9, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 GLU A 34 REMARK 465 GLY B 0 REMARK 465 ALA B 32 REMARK 465 SER B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 46 O HOH B 242 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 73 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 48 -1.83 71.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 136 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 HOH A 189 O 67.1 REMARK 620 3 HOH A 193 O 82.1 78.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 133 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE1 REMARK 620 2 GLU A 67 OE2 51.3 REMARK 620 3 ASN A 70 OD1 81.9 130.4 REMARK 620 4 VAL A 72 O 80.7 74.9 83.2 REMARK 620 5 ASP A 73 OD1 160.1 127.3 90.5 80.1 REMARK 620 6 HOH B 152 O 118.4 70.6 158.9 104.6 72.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 132 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD2 REMARK 620 2 ASP A 73 OD1 51.0 REMARK 620 3 HOH A 197 O 113.3 107.9 REMARK 620 4 HOH A 217 O 75.9 126.9 90.8 REMARK 620 5 GLU B 75 OE2 89.2 83.0 157.3 98.5 REMARK 620 6 HOH B 170 O 151.0 151.3 81.0 78.9 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 141 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE2 REMARK 620 2 HOH A 178 O 80.2 REMARK 620 3 ASP B 73 OD2 86.6 149.8 REMARK 620 4 ASP B 73 OD1 83.0 151.5 50.3 REMARK 620 5 HOH B 199 O 147.7 67.8 123.3 124.3 REMARK 620 6 HOH B 199 O 164.2 103.1 96.9 87.5 37.2 REMARK 620 7 HOH B 206 O 92.4 75.4 78.1 128.3 83.6 103.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 138 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD1 REMARK 620 2 HOH A 215 O 77.5 REMARK 620 3 HOH A 317 O 99.1 155.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 143 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 50 O REMARK 620 2 ASN B 51 OD1 76.7 REMARK 620 3 HOH B 253 O 57.5 134.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 135 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 OD2 REMARK 620 2 ASP B 56 O 80.3 REMARK 620 3 HOH B 240 O 85.1 141.5 REMARK 620 4 HOH B 281 O 149.7 71.6 109.9 REMARK 620 5 HOH B 299 O 88.2 85.9 129.2 100.7 REMARK 620 6 HOH B 304 O 100.6 71.0 77.1 59.8 153.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 137 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 120 O REMARK 620 2 HOH B 270 O 81.0 REMARK 620 3 HOH B 282 O 66.6 76.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 134 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 131 OXT REMARK 620 2 TYR B 131 O 50.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 417407 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 32-131) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3U7Z A 32 131 UNP A7AZY1 A7AZY1_RUMGN 32 131 DBREF 3U7Z B 32 131 UNP A7AZY1 A7AZY1_RUMGN 32 131 SEQADV 3U7Z GLY A 0 UNP A7AZY1 EXPRESSION TAG SEQADV 3U7Z GLY B 0 UNP A7AZY1 EXPRESSION TAG SEQRES 1 A 101 GLY ALA SER GLU GLY GLU LYS HIS ILE THR VAL THR VAL SEQRES 2 A 101 ILE HIS GLY ASP GLN THR GLU ASN VAL PHE GLU PHE ASP SEQRES 3 A 101 THR ASP ALA LYS TYR LEU GLY GLU VAL LEU GLU SER GLU SEQRES 4 A 101 ASN LEU VAL ASP GLY GLU SER GLY GLU TYR GLY LEU PHE SEQRES 5 A 101 ILE THR THR VAL ASP GLU GLU THR ALA ASP ASP SER LYS SEQRES 6 A 101 GLN GLN TRP TRP CYS ILE THR LYS GLY GLY GLU GLN VAL SEQRES 7 A 101 ASN THR SER ALA ASP GLN THR PRO VAL SER ASP GLY ASP SEQRES 8 A 101 ALA PHE GLU LEU THR LEU LYS GLU GLY TYR SEQRES 1 B 101 GLY ALA SER GLU GLY GLU LYS HIS ILE THR VAL THR VAL SEQRES 2 B 101 ILE HIS GLY ASP GLN THR GLU ASN VAL PHE GLU PHE ASP SEQRES 3 B 101 THR ASP ALA LYS TYR LEU GLY GLU VAL LEU GLU SER GLU SEQRES 4 B 101 ASN LEU VAL ASP GLY GLU SER GLY GLU TYR GLY LEU PHE SEQRES 5 B 101 ILE THR THR VAL ASP GLU GLU THR ALA ASP ASP SER LYS SEQRES 6 B 101 GLN GLN TRP TRP CYS ILE THR LYS GLY GLY GLU GLN VAL SEQRES 7 B 101 ASN THR SER ALA ASP GLN THR PRO VAL SER ASP GLY ASP SEQRES 8 B 101 ALA PHE GLU LEU THR LEU LYS GLU GLY TYR HET CA A 132 1 HET CA A 133 1 HET CA A 136 1 HET CA A 138 1 HET CA A 139 2 HET CA A 140 2 HET EDO A 144 4 HET EDO A 145 4 HET EDO A 147 4 HET CA B 134 1 HET CA B 135 1 HET CA B 137 1 HET CA B 141 1 HET CA B 142 1 HET CA B 143 1 HET EDO B 146 4 HET EDO B 148 4 HET EDO B 149 4 HET EDO B 150 4 HET EDO B 151 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 12(CA 2+) FORMUL 9 EDO 8(C2 H6 O2) FORMUL 23 HOH *167(H2 O) HELIX 1 1 TYR A 61 GLU A 69 1 9 HELIX 2 2 ASP A 92 LYS A 95 5 4 HELIX 3 3 SER A 111 THR A 115 5 5 HELIX 4 4 TYR B 61 GLU B 69 1 9 HELIX 5 5 ASP B 92 LYS B 95 5 4 HELIX 6 6 SER B 111 THR B 115 5 5 SHEET 1 A 5 GLU A 50 THR A 57 0 SHEET 2 A 5 LYS A 37 ILE A 44 -1 N LYS A 37 O THR A 57 SHEET 3 A 5 ALA A 122 GLU A 129 1 O LEU A 125 N ILE A 44 SHEET 4 A 5 GLN A 97 LYS A 103 -1 N TRP A 98 O LYS A 128 SHEET 5 A 5 GLU A 106 GLN A 107 -1 O GLU A 106 N LYS A 103 SHEET 1 B 3 VAL A 72 GLU A 75 0 SHEET 2 B 3 PHE A 82 VAL A 86 -1 O PHE A 82 N GLU A 75 SHEET 3 B 3 GLU A 89 THR A 90 -1 O GLU A 89 N VAL A 86 SHEET 1 C 5 GLU B 50 THR B 57 0 SHEET 2 C 5 LYS B 37 ILE B 44 -1 N VAL B 43 O ASN B 51 SHEET 3 C 5 ALA B 122 GLU B 129 1 O PHE B 123 N THR B 40 SHEET 4 C 5 GLN B 97 LYS B 103 -1 N TRP B 98 O LYS B 128 SHEET 5 C 5 GLU B 106 GLN B 107 -1 O GLU B 106 N LYS B 103 SHEET 1 D 3 VAL B 72 GLU B 75 0 SHEET 2 D 3 PHE B 82 VAL B 86 -1 O PHE B 82 N GLU B 75 SHEET 3 D 3 GLU B 89 THR B 90 -1 O GLU B 89 N VAL B 86 LINK O GLU A 36 CA B CA A 140 1555 1555 2.21 LINK O GLU A 36 CA A CA A 140 1555 1555 2.91 LINK OE2BGLU A 54 CA CA A 136 1555 1555 2.42 LINK OE1 GLU A 67 CA CA A 133 1555 1555 2.51 LINK OE2 GLU A 67 CA CA A 133 1555 1555 2.53 LINK OD1 ASN A 70 CA CA A 133 1555 1555 2.35 LINK O VAL A 72 CA CA A 133 1555 1555 2.38 LINK OD2 ASP A 73 CA CA A 132 1555 1555 2.47 LINK OD1 ASP A 73 CA CA A 132 1555 1555 2.60 LINK OD1 ASP A 73 CA CA A 133 1555 1555 2.40 LINK OE2 GLU A 75 CA CA B 141 1555 1555 2.42 LINK OD1 ASP A 87 CA CA A 138 1555 1555 2.16 LINK OD2 ASP A 119 CA A CA A 139 1555 1555 2.24 LINK OD2 ASP A 119 CA B CA A 139 1555 1555 2.37 LINK CA CA A 132 O HOH A 197 1555 1555 2.47 LINK CA CA A 132 O HOH A 217 1555 1555 2.41 LINK CA CA A 132 OE2 GLU B 75 1555 1555 2.35 LINK CA CA A 132 O HOH B 170 1555 1555 2.42 LINK CA CA A 133 O HOH B 152 1555 1555 2.44 LINK CA CA A 136 O HOH A 189 1555 1555 2.47 LINK CA CA A 136 O HOH A 193 1555 1555 2.30 LINK CA CA A 138 O HOH A 215 1555 1555 2.64 LINK CA CA A 138 O AHOH A 317 1555 1555 2.48 LINK O HOH A 178 CA CA B 141 1555 1555 2.43 LINK O GLU B 50 CA CA B 143 1555 1555 2.62 LINK OD1 ASN B 51 CA CA B 143 1555 1555 2.40 LINK OD2 ASP B 56 CA CA B 135 1555 1555 2.28 LINK O ASP B 56 CA CA B 135 1555 1555 2.44 LINK OD2 ASP B 73 CA CA B 141 1555 1555 2.45 LINK OD1 ASP B 73 CA CA B 141 1555 1555 2.66 LINK OD2 ASP B 119 CA CA B 142 1555 1555 2.26 LINK O GLY B 120 CA CA B 137 1555 1555 2.32 LINK OXT TYR B 131 CA CA B 134 1555 1555 2.45 LINK O TYR B 131 CA CA B 134 1555 1555 2.72 LINK CA CA B 135 O HOH B 240 1555 1555 1.86 LINK CA CA B 135 O HOH B 281 1555 1555 2.15 LINK CA CA B 135 O HOH B 299 1555 1555 2.70 LINK CA CA B 135 O HOH B 304 1555 1555 2.80 LINK CA CA B 137 O HOH B 270 1555 1555 2.09 LINK CA CA B 137 O HOH B 282 1555 1555 2.56 LINK CA CA B 141 O BHOH B 199 1555 1555 2.34 LINK CA CA B 141 O AHOH B 199 1555 1555 2.43 LINK CA CA B 141 O HOH B 206 1555 1555 2.44 LINK CA CA B 143 O HOH B 253 1555 1555 2.16 SITE 1 AC1 6 ASP A 73 TYR A 131 HOH A 197 HOH A 217 SITE 2 AC1 6 GLU B 75 HOH B 170 SITE 1 AC2 6 GLU A 67 ASN A 70 VAL A 72 ASP A 73 SITE 2 AC2 6 TYR A 131 HOH B 152 SITE 1 AC3 6 GLU A 54 HOH A 189 HOH A 193 ASP B 87 SITE 2 AC3 6 GLU B 88 CA B 142 SITE 1 AC4 5 ASP A 87 HOH A 215 HOH A 317 GLU B 54 SITE 2 AC4 5 HOH B 314 SITE 1 AC5 7 GLU A 88 ASP A 119 CA A 140 HOH A 198 SITE 2 AC5 7 HOH A 215 HOH A 250 HOH B 298 SITE 1 AC6 5 GLU A 36 GLU A 88 ASP A 119 CA A 139 SITE 2 AC6 5 GLU B 54 SITE 1 AC7 3 TYR A 79 LEU A 81 HOH A 218 SITE 1 AC8 7 LEU A 81 PHE A 82 ILE A 83 ILE A 101 SITE 2 AC8 7 SER A 111 ALA A 112 HOH A 169 SITE 1 AC9 8 ASN A 70 LEU A 71 VAL A 72 ASP A 73 SITE 2 AC9 8 THR A 85 ASP A 87 GLU A 88 HOH A 262 SITE 1 BC1 6 HOH A 153 GLU B 67 ASN B 70 VAL B 72 SITE 2 BC1 6 ASP B 73 TYR B 131 SITE 1 BC2 5 ASP B 56 HOH B 240 HOH B 281 HOH B 299 SITE 2 BC2 5 HOH B 304 SITE 1 BC3 5 HOH A 256 GLY B 120 HOH B 270 HOH B 278 SITE 2 BC3 5 HOH B 282 SITE 1 BC4 6 GLU A 75 HOH A 178 ASP B 73 TYR B 131 SITE 2 BC4 6 HOH B 199 HOH B 206 SITE 1 BC5 8 GLU A 54 CA A 136 HOH A 189 HOH A 226 SITE 2 BC5 8 HOH A 284 GLU B 88 ASP B 119 HOH B 186 SITE 1 BC6 5 GLU A 36 GLU A 106 GLU B 50 ASN B 51 SITE 2 BC6 5 HOH B 253 SITE 1 BC7 7 ASN B 70 LEU B 71 ASP B 73 ASP B 87 SITE 2 BC7 7 GLU B 88 HOH B 245 HOH B 260 SITE 1 BC8 7 LEU B 81 PHE B 82 ILE B 83 ILE B 101 SITE 2 BC8 7 SER B 111 ALA B 112 HOH B 171 SITE 1 BC9 2 TYR A 131 TYR B 79 SITE 1 CC1 5 ASP B 93 GLN B 96 GLN B 97 TRP B 98 SITE 2 CC1 5 EDO B 151 SITE 1 CC2 4 ASP A 93 ASP B 93 GLN B 96 EDO B 150 CRYST1 29.685 30.474 47.156 73.13 83.79 89.30 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033687 -0.000411 -0.003708 0.00000 SCALE2 0.000000 0.032817 -0.009971 0.00000 SCALE3 0.000000 0.000000 0.022294 0.00000