HEADER FLUORESCENT PROTEIN 16-OCT-11 3U8A TITLE CRYSTAL STRUCTURE OF MONOMERIC REVERSIBLY PHOTOSWITCHABLE RED TITLE 2 FLUORESCENT PROTEIN RSTAGRFP IN THE OFF STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN RSTAGRFP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: ARTIFICIAL GENE; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PQE30 KEYWDS BETA-BARREL, FLUORESCENT PROTEIN, LIGHT INDUCED REVERSIBLE KEYWDS 2 PHOTOSWITCHING, REVERSIBLY PHOTOSWITCHABLE FLUORESCENT PROTEIN, CIS- KEYWDS 3 TRANS ISOMERIZATION EXPDTA X-RAY DIFFRACTION AUTHOR S.PLETNEV REVDAT 2 09-MAY-12 3U8A 1 JRNL REVDAT 1 22-FEB-12 3U8A 0 JRNL AUTH S.PLETNEV,F.V.SUBACH,Z.DAUTER,A.WLODAWER,V.V.VERKHUSHA JRNL TITL A STRUCTURAL BASIS FOR REVERSIBLE PHOTOSWITCHING OF JRNL TITL 2 ABSORBANCE SPECTRA IN RED FLUORESCENT PROTEIN RSTAGRFP. JRNL REF J.MOL.BIOL. V. 417 144 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22310052 JRNL DOI 10.1016/J.JMB.2012.01.044 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 82778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6557 - 4.0782 0.95 6794 144 0.1527 0.1906 REMARK 3 2 4.0782 - 3.2388 0.97 7033 117 0.1587 0.2129 REMARK 3 3 3.2388 - 2.8299 0.98 7047 163 0.1821 0.2459 REMARK 3 4 2.8299 - 2.5714 0.98 7075 125 0.1956 0.2050 REMARK 3 5 2.5714 - 2.3872 0.98 7047 131 0.1983 0.3068 REMARK 3 6 2.3872 - 2.2465 0.97 6996 155 0.1956 0.2652 REMARK 3 7 2.2465 - 2.1341 0.97 7027 143 0.2139 0.2800 REMARK 3 8 2.1341 - 2.0412 0.97 6947 153 0.2190 0.2736 REMARK 3 9 2.0412 - 1.9627 0.96 6958 133 0.2315 0.3290 REMARK 3 10 1.9627 - 1.8950 0.94 6729 130 0.2460 0.2810 REMARK 3 11 1.8950 - 1.8357 0.90 6460 132 0.2925 0.3330 REMARK 3 12 1.8357 - 1.7830 0.69 5015 124 0.3343 0.3923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 69.78 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.27380 REMARK 3 B22 (A**2) : 0.40720 REMARK 3 B33 (A**2) : -7.68100 REMARK 3 B12 (A**2) : -15.23310 REMARK 3 B13 (A**2) : -0.02410 REMARK 3 B23 (A**2) : -1.16600 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 7320 REMARK 3 ANGLE : 1.735 9892 REMARK 3 CHIRALITY : 0.119 1040 REMARK 3 PLANARITY : 0.008 1280 REMARK 3 DIHEDRAL : 15.246 2736 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A REMARK 3 ORIGIN FOR THE GROUP (A): -0.2144 0.6895 -0.0404 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.2774 REMARK 3 T33: 0.2477 T12: 0.0268 REMARK 3 T13: -0.0169 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.2646 L22: 1.4081 REMARK 3 L33: 2.2772 L12: -0.0903 REMARK 3 L13: 0.0938 L23: -0.2800 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: 0.0184 S13: -0.1470 REMARK 3 S21: -0.3391 S22: -0.0766 S23: 0.0572 REMARK 3 S31: 0.5802 S32: -0.2397 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain B REMARK 3 ORIGIN FOR THE GROUP (A): 4.4677 -6.8149 30.7778 REMARK 3 T TENSOR REMARK 3 T11: 0.3015 T22: 0.2450 REMARK 3 T33: 0.3099 T12: -0.0021 REMARK 3 T13: -0.0339 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 0.6989 L22: 3.3032 REMARK 3 L33: 1.5782 L12: 0.6113 REMARK 3 L13: -0.0020 L23: -0.1852 REMARK 3 S TENSOR REMARK 3 S11: 0.2059 S12: -0.2500 S13: -0.2330 REMARK 3 S21: 0.2724 S22: -0.2619 S23: -0.2793 REMARK 3 S31: 0.3015 S32: -0.1686 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain C REMARK 3 ORIGIN FOR THE GROUP (A): 8.5685 22.5611 36.7078 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.3422 REMARK 3 T33: 0.2525 T12: -0.0844 REMARK 3 T13: 0.0352 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 1.4011 L22: 1.7564 REMARK 3 L33: 1.9267 L12: 0.3017 REMARK 3 L13: -0.0267 L23: -0.4381 REMARK 3 S TENSOR REMARK 3 S11: 0.2808 S12: -0.2701 S13: 0.1117 REMARK 3 S21: 0.2182 S22: -0.2746 S23: -0.0221 REMARK 3 S31: -0.4760 S32: 0.2601 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain D REMARK 3 ORIGIN FOR THE GROUP (A): 13.5235 27.1249 5.4101 REMARK 3 T TENSOR REMARK 3 T11: 0.3224 T22: 0.2852 REMARK 3 T33: 0.3261 T12: -0.0326 REMARK 3 T13: 0.0201 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.7397 L22: 2.4449 REMARK 3 L33: 2.4683 L12: 0.8094 REMARK 3 L13: 0.1942 L23: -0.1811 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.0609 S13: 0.2388 REMARK 3 S21: -0.3196 S22: -0.0953 S23: -0.2568 REMARK 3 S31: -0.5941 S32: 0.3199 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-11. REMARK 100 THE RCSB ID CODE IS RCSB068431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.783 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE, 20% PEG 3350, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 229 REMARK 465 HIS A 230 REMARK 465 LYS A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 229 REMARK 465 HIS B 230 REMARK 465 LYS B 231 REMARK 465 LEU B 232 REMARK 465 ASN B 233 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 GLY C -2 REMARK 465 ARG C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 229 REMARK 465 HIS C 230 REMARK 465 LYS C 231 REMARK 465 LEU C 232 REMARK 465 ASN C 233 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 HIS D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 GLY D -2 REMARK 465 ARG D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLY D 229 REMARK 465 HIS D 230 REMARK 465 LYS D 231 REMARK 465 LEU D 232 REMARK 465 ASN D 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN C 118 O HOH C 367 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 124 CB VAL B 124 CG1 -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 199 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU D 147 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 -37.65 -22.09 REMARK 500 ASN A 20 58.05 35.36 REMARK 500 PHE A 69 44.98 -105.94 REMARK 500 GLN A 74 39.73 39.21 REMARK 500 LYS A 227 46.29 -84.26 REMARK 500 PHE B 69 57.18 -99.00 REMARK 500 ASP B 151 82.72 44.56 REMARK 500 ASP C 151 60.09 28.22 REMARK 500 ASP C 223 39.22 -79.33 REMARK 500 ASN D 20 54.69 38.40 REMARK 500 ASN D 21 -1.04 70.58 REMARK 500 ASP D 56 -39.60 -37.12 REMARK 500 PHE D 69 48.09 -100.30 REMARK 500 ASP D 151 113.13 -28.85 REMARK 500 ASN D 182 79.07 -103.97 REMARK 500 GLU D 208 28.43 49.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP D 151 23.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 243 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH D 290 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH D 305 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH D 309 DISTANCE = 7.56 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M22 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TAGRFP FLUORESCENT PROTEIN REMARK 900 RELATED ID: 3U8C RELATED DB: PDB REMARK 900 MONOMERIC RED REVERSIBLY PHOTOSWITCHABLE FLUORESCENT REMARK 900 PROTEIN IN THE "ON" STATE DBREF 3U8A A -11 231 PDB 3U8A 3U8A -11 231 DBREF 3U8A B -11 231 PDB 3U8A 3U8A -11 231 DBREF 3U8A C -11 231 PDB 3U8A 3U8A -11 231 DBREF 3U8A D -11 231 PDB 3U8A 3U8A -11 231 SEQRES 1 A 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 A 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 A 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 A 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 A 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 A 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 A 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 A 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 A 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 A 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 A 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 A 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 A 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 A 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 A 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 A 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 A 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 A 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 A 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 B 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 B 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 B 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 B 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 B 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 B 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 B 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 B 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 B 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 B 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 B 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 B 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 B 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 B 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 B 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 B 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 B 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 B 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 B 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 C 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 C 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 C 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 C 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 C 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 C 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 C 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 C 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 C 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 C 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 C 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 C 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 C 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 C 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 C 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 C 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 C 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 C 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 C 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 D 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 D 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 D 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 D 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 D 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 D 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 D 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 D 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 D 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 D 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 D 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 D 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 D 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 D 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 D 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 D 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 D 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 D 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 D 243 PRO SER LYS LEU GLY HIS LYS LEU ASN MODRES 3U8A NRQ A 63 MET MODRES 3U8A NRQ A 63 TYR MODRES 3U8A NRQ A 63 GLY MODRES 3U8A NRQ B 63 MET MODRES 3U8A NRQ B 63 TYR MODRES 3U8A NRQ B 63 GLY MODRES 3U8A NRQ C 63 MET MODRES 3U8A NRQ C 63 TYR MODRES 3U8A NRQ C 63 GLY MODRES 3U8A NRQ D 63 MET MODRES 3U8A NRQ D 63 TYR MODRES 3U8A NRQ D 63 GLY HET NRQ A 63 23 HET NRQ B 63 23 HET NRQ C 63 23 HET NRQ D 63 23 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 1 NRQ 4(C16 H17 N3 O4 S) FORMUL 5 HOH *532(H2 O) HELIX 1 1 ALA A 54 PHE A 62 5 9 HELIX 2 2 SER A 66 ILE A 70 5 5 HELIX 3 3 ASP A 78 SER A 83 1 6 HELIX 4 4 ALA B 54 PHE B 62 5 9 HELIX 5 5 ALA C 54 PHE C 62 5 9 HELIX 6 6 SER C 66 ILE C 70 5 5 HELIX 7 7 ALA D 54 PHE D 62 5 9 HELIX 8 8 SER D 66 ILE D 70 5 5 HELIX 9 9 ASP D 78 SER D 83 1 6 SHEET 1 A11 ASN A 71 HIS A 72 0 SHEET 2 A11 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 A11 THR A 38 GLU A 47 -1 N ILE A 43 O VAL A 211 SHEET 4 A11 HIS A 22 LYS A 33 -1 N GLU A 29 O ARG A 42 SHEET 5 A11 MET A 9 VAL A 19 -1 N MET A 15 O CYS A 26 SHEET 6 A11 CYS A 114 VAL A 124 1 O TYR A 117 N LYS A 12 SHEET 7 A11 VAL A 101 GLN A 111 -1 N SER A 109 O ILE A 116 SHEET 8 A11 PHE A 88 TYR A 96 -1 N PHE A 88 O THR A 108 SHEET 9 A11 HIS A 169 SER A 180 -1 O THR A 177 N GLU A 91 SHEET 10 A11 GLY A 153 LEU A 164 -1 N LEU A 154 O TYR A 178 SHEET 11 A11 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 B 6 ASN A 71 HIS A 72 0 SHEET 2 B 6 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 B 6 TYR A 193 ALA A 205 -1 N GLU A 200 O HIS A 214 SHEET 4 B 6 ALA A 143 ALA A 150 -1 N LEU A 147 O TYR A 193 SHEET 5 B 6 GLY A 153 LEU A 164 -1 O GLU A 155 N TYR A 148 SHEET 6 B 6 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 C11 ASN B 71 HIS B 72 0 SHEET 2 C11 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 C11 THR B 38 GLU B 47 -1 N ILE B 43 O VAL B 211 SHEET 4 C11 HIS B 22 LYS B 33 -1 N THR B 27 O LYS B 44 SHEET 5 C11 MET B 9 VAL B 19 -1 N MET B 15 O CYS B 26 SHEET 6 C11 CYS B 114 VAL B 124 1 O LEU B 115 N HIS B 10 SHEET 7 C11 VAL B 101 GLN B 111 -1 N GLN B 111 O CYS B 114 SHEET 8 C11 PHE B 88 TYR B 96 -1 N THR B 94 O LEU B 102 SHEET 9 C11 HIS B 169 SER B 180 -1 O ARG B 179 N THR B 89 SHEET 10 C11 GLY B 153 LEU B 164 -1 N LEU B 154 O TYR B 178 SHEET 11 C11 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 SHEET 1 D 6 ASN B 71 HIS B 72 0 SHEET 2 D 6 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 D 6 TYR B 193 ALA B 205 -1 N ILE B 202 O GLU B 212 SHEET 4 D 6 ALA B 143 ALA B 150 -1 N LEU B 147 O TYR B 193 SHEET 5 D 6 GLY B 153 LEU B 164 -1 O GLU B 155 N TYR B 148 SHEET 6 D 6 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 SHEET 1 E11 ASN C 71 HIS C 72 0 SHEET 2 E11 TYR C 210 ARG C 220 1 O ALA C 219 N ASN C 71 SHEET 3 E11 THR C 38 GLU C 47 -1 N ILE C 43 O VAL C 211 SHEET 4 E11 HIS C 22 LYS C 33 -1 N THR C 27 O LYS C 44 SHEET 5 E11 MET C 9 VAL C 19 -1 N MET C 15 O CYS C 26 SHEET 6 E11 CYS C 114 VAL C 124 1 O VAL C 119 N TYR C 14 SHEET 7 E11 VAL C 101 GLN C 111 -1 N SER C 109 O ILE C 116 SHEET 8 E11 PHE C 88 TYR C 96 -1 N PHE C 88 O THR C 108 SHEET 9 E11 HIS C 169 SER C 180 -1 O ASN C 173 N THR C 95 SHEET 10 E11 GLY C 153 LEU C 164 -1 N LEU C 154 O TYR C 178 SHEET 11 E11 THR C 137 TRP C 140 -1 N LEU C 138 O LYS C 163 SHEET 1 F 6 ASN C 71 HIS C 72 0 SHEET 2 F 6 TYR C 210 ARG C 220 1 O ALA C 219 N ASN C 71 SHEET 3 F 6 TYR C 193 ALA C 205 -1 N GLU C 200 O HIS C 214 SHEET 4 F 6 ALA C 143 ALA C 150 -1 N LEU C 147 O TYR C 193 SHEET 5 F 6 GLY C 153 LEU C 164 -1 O GLU C 155 N TYR C 148 SHEET 6 F 6 THR C 137 TRP C 140 -1 N LEU C 138 O LYS C 163 SHEET 1 G11 ASN D 71 HIS D 72 0 SHEET 2 G11 TYR D 210 ARG D 220 1 O ALA D 219 N ASN D 71 SHEET 3 G11 THR D 38 GLU D 47 -1 N ILE D 43 O VAL D 211 SHEET 4 G11 HIS D 22 LYS D 33 -1 N GLU D 29 O ARG D 42 SHEET 5 G11 MET D 9 VAL D 19 -1 N MET D 15 O CYS D 26 SHEET 6 G11 CYS D 114 VAL D 124 1 O TYR D 117 N LYS D 12 SHEET 7 G11 VAL D 101 GLN D 111 -1 N THR D 103 O ARG D 122 SHEET 8 G11 PHE D 88 TYR D 96 -1 N PHE D 88 O THR D 108 SHEET 9 G11 HIS D 169 SER D 180 -1 O ASN D 173 N THR D 95 SHEET 10 G11 LEU D 154 LEU D 164 -1 N LEU D 154 O TYR D 178 SHEET 11 G11 THR D 137 TRP D 140 -1 N GLY D 139 O LYS D 163 SHEET 1 H 6 ASN D 71 HIS D 72 0 SHEET 2 H 6 TYR D 210 ARG D 220 1 O ALA D 219 N ASN D 71 SHEET 3 H 6 TYR D 193 ALA D 205 -1 N ILE D 202 O GLU D 212 SHEET 4 H 6 ALA D 143 PRO D 149 -1 N LEU D 147 O TYR D 193 SHEET 5 H 6 LEU D 154 LEU D 164 -1 O GLU D 155 N TYR D 148 SHEET 6 H 6 THR D 137 TRP D 140 -1 N GLY D 139 O LYS D 163 LINK C PHE A 62 N1 NRQ A 63 1555 1555 1.44 LINK C3 NRQ A 63 N SER A 66 1555 1555 1.39 LINK C PHE B 62 N1 NRQ B 63 1555 1555 1.43 LINK C3 NRQ B 63 N SER B 66 1555 1555 1.44 LINK C PHE C 62 N1 NRQ C 63 1555 1555 1.43 LINK C3 NRQ C 63 N SER C 66 1555 1555 1.32 LINK C PHE D 62 N1 NRQ D 63 1555 1555 1.42 LINK C3 NRQ D 63 N SER D 66 1555 1555 1.35 CISPEP 1 GLY A 49 PRO A 50 0 -11.83 CISPEP 2 PHE A 84 PRO A 85 0 9.10 CISPEP 3 GLY B 49 PRO B 50 0 -3.06 CISPEP 4 PHE B 84 PRO B 85 0 7.25 CISPEP 5 GLY C 49 PRO C 50 0 -4.50 CISPEP 6 PHE C 84 PRO C 85 0 8.04 CISPEP 7 GLY D 49 PRO D 50 0 -4.32 CISPEP 8 PHE D 84 PRO D 85 0 12.09 CRYST1 49.750 69.645 73.947 78.61 83.77 72.16 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020101 -0.006469 -0.001088 0.00000 SCALE2 0.000000 0.015084 -0.002658 0.00000 SCALE3 0.000000 0.000000 0.013813 0.00000