HEADER FLUORESCENT PROTEIN 16-OCT-11 3U8C TITLE CRYSTAL STRUCTURE OF MONOMERIC REVERSIBLY PHOTOSWITCHABLE RED TITLE 2 FLUORESCENT PROTEIN RSTAGRFP IN THE ON STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN RSTAGRFP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: ARTIFICIAL GENE; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS BETA BARREL, FLUORESCENT PROTEIN, LIGHT INDUCED REVERSIBLE KEYWDS 2 PHOTOSWITCHING, REVERSIBLY PHOTOSWITCHABLE FLUORESCENT PROTEIN, CIS- KEYWDS 3 TRANS ISOMERIZATION EXPDTA X-RAY DIFFRACTION AUTHOR S.PLETNEV REVDAT 2 09-MAY-12 3U8C 1 JRNL REVDAT 1 22-FEB-12 3U8C 0 JRNL AUTH S.PLETNEV,F.V.SUBACH,Z.DAUTER,A.WLODAWER,V.V.VERKHUSHA JRNL TITL A STRUCTURAL BASIS FOR REVERSIBLE PHOTOSWITCHING OF JRNL TITL 2 ABSORBANCE SPECTRA IN RED FLUORESCENT PROTEIN RSTAGRFP. JRNL REF J.MOL.BIOL. V. 417 144 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22310052 JRNL DOI 10.1016/J.JMB.2012.01.044 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 45913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8893 - 4.7052 0.99 4526 144 0.1515 0.2198 REMARK 3 2 4.7052 - 3.7379 0.99 4512 154 0.1312 0.2034 REMARK 3 3 3.7379 - 3.2663 0.99 4495 136 0.1560 0.2163 REMARK 3 4 3.2663 - 2.9681 0.98 4538 148 0.1573 0.2806 REMARK 3 5 2.9681 - 2.7556 0.98 4444 122 0.1686 0.2708 REMARK 3 6 2.7556 - 2.5933 0.98 4471 162 0.1730 0.2763 REMARK 3 7 2.5933 - 2.4635 0.98 4446 155 0.1862 0.2799 REMARK 3 8 2.4635 - 2.3563 0.98 4469 140 0.1874 0.2963 REMARK 3 9 2.3563 - 2.2656 0.97 4466 146 0.2051 0.2826 REMARK 3 10 2.2656 - 2.1880 0.89 4112 127 0.2487 0.3776 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 61.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.27400 REMARK 3 B22 (A**2) : 1.55100 REMARK 3 B33 (A**2) : -6.82500 REMARK 3 B12 (A**2) : -8.24620 REMARK 3 B13 (A**2) : 1.33960 REMARK 3 B23 (A**2) : 0.83290 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 7429 REMARK 3 ANGLE : 1.957 10049 REMARK 3 CHIRALITY : 0.115 1040 REMARK 3 PLANARITY : 0.009 1300 REMARK 3 DIHEDRAL : 15.436 2790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain A REMARK 3 ORIGIN FOR THE GROUP (A): -0.2111 0.6604 -0.0347 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.1650 REMARK 3 T33: 0.1456 T12: 0.0325 REMARK 3 T13: -0.0221 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.8435 L22: 1.6484 REMARK 3 L33: 1.9719 L12: 0.0214 REMARK 3 L13: 0.3078 L23: -0.2968 REMARK 3 S TENSOR REMARK 3 S11: 0.1599 S12: -0.0216 S13: -0.0377 REMARK 3 S21: -0.2620 S22: -0.1366 S23: 0.0681 REMARK 3 S31: 0.4283 S32: -0.2077 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain B REMARK 3 ORIGIN FOR THE GROUP (A): 4.5461 -6.8918 30.7241 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.2218 REMARK 3 T33: 0.2479 T12: 0.0072 REMARK 3 T13: -0.0439 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 0.6079 L22: 3.1104 REMARK 3 L33: 1.3875 L12: 0.6779 REMARK 3 L13: -0.0198 L23: -0.4299 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: -0.2795 S13: -0.1706 REMARK 3 S21: 0.2036 S22: -0.2680 S23: -0.2223 REMARK 3 S31: 0.3142 S32: -0.0986 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain C REMARK 3 ORIGIN FOR THE GROUP (A): 8.7200 22.3731 36.6462 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.2708 REMARK 3 T33: 0.1721 T12: -0.0868 REMARK 3 T13: 0.0233 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.8579 L22: 1.6275 REMARK 3 L33: 1.4826 L12: 0.3985 REMARK 3 L13: -0.2394 L23: -0.2241 REMARK 3 S TENSOR REMARK 3 S11: 0.3009 S12: -0.3332 S13: 0.0834 REMARK 3 S21: 0.2584 S22: -0.2923 S23: -0.0149 REMARK 3 S31: -0.4282 S32: 0.2258 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain D REMARK 3 ORIGIN FOR THE GROUP (A): 13.5411 26.9827 5.3639 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.1839 REMARK 3 T33: 0.2137 T12: -0.0374 REMARK 3 T13: 0.0415 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.4089 L22: 2.2437 REMARK 3 L33: 1.9165 L12: 0.9047 REMARK 3 L13: 0.0670 L23: 0.0840 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: 0.0673 S13: 0.1372 REMARK 3 S21: -0.3355 S22: -0.0783 S23: -0.2067 REMARK 3 S31: -0.6075 S32: 0.2556 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-11. REMARK 100 THE RCSB ID CODE IS RCSB068433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45928 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.188 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE, 20% PEG 3350, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 229 REMARK 465 HIS A 230 REMARK 465 LYS A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 229 REMARK 465 HIS B 230 REMARK 465 LYS B 231 REMARK 465 LEU B 232 REMARK 465 ASN B 233 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 GLY C -2 REMARK 465 ARG C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 229 REMARK 465 HIS C 230 REMARK 465 LYS C 231 REMARK 465 LEU C 232 REMARK 465 ASN C 233 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 HIS D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 GLY D -2 REMARK 465 ARG D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLY D 229 REMARK 465 HIS D 230 REMARK 465 LYS D 231 REMARK 465 LEU D 232 REMARK 465 ASN D 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 151 OG SER D 128 1.29 REMARK 500 NZ LYS D 188 O HOH D 287 1.45 REMARK 500 OD1 ASP C 151 OG SER D 128 1.86 REMARK 500 OE2 GLU D 86 ND2 ASN D 182 2.04 REMARK 500 OG1 THR B 38 O HOH B 354 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HIS A 72 O HOH C 500 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 -2.21 71.89 REMARK 500 PHE A 69 48.40 -98.68 REMARK 500 ASP A 151 -99.66 14.72 REMARK 500 ASN B 21 -0.01 76.01 REMARK 500 ASP B 56 -31.99 -39.20 REMARK 500 PHE B 69 55.67 -95.01 REMARK 500 ASP B 151 -110.09 40.87 REMARK 500 LYS C 33 74.83 -118.31 REMARK 500 PRO C 34 -32.13 -28.74 REMARK 500 PHE C 69 40.78 -99.25 REMARK 500 GLN C 74 9.76 59.93 REMARK 500 LEU C 138 48.88 -142.33 REMARK 500 ASP C 151 -113.43 26.50 REMARK 500 ASN C 182 56.50 -93.31 REMARK 500 ASN D 21 -6.71 72.99 REMARK 500 ASP D 56 -39.96 -37.53 REMARK 500 PHE D 69 54.03 -97.97 REMARK 500 ASP D 151 -74.93 -2.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PRO C 183 46.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M22 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TAGRFP FLUORESCENT PROTEIN REMARK 900 RELATED ID: 3U8A RELATED DB: PDB REMARK 900 MONOMERIC RED REVERSIBLY PHOTOSWITCHABLE FLUORESCENT REMARK 900 PROTEIN IN THE "OFF" STATE DBREF 3U8C A -11 231 PDB 3U8C 3U8C -11 231 DBREF 3U8C B -11 233 PDB 3U8C 3U8C -11 233 DBREF 3U8C C -11 233 PDB 3U8C 3U8C -11 233 DBREF 3U8C D -11 231 PDB 3U8C 3U8C -11 231 SEQRES 1 A 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 A 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 A 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 A 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 A 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 A 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 A 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 A 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 A 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 A 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 A 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 A 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 A 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 A 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 A 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 A 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 A 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 A 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 A 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 B 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 B 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 B 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 B 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 B 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 B 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 B 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 B 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 B 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 B 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 B 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 B 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 B 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 B 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 B 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 B 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 B 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 B 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 B 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 C 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 C 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 C 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 C 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 C 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 C 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 C 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 C 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 C 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 C 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 C 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 C 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 C 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 C 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 C 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 C 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 C 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 C 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 C 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 D 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 D 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 D 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 D 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 D 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 D 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER ARG THR SEQRES 7 D 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE TRP LYS SEQRES 8 D 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 D 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 D 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 D 243 LEU ARG GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 D 243 GLN LYS LYS THR LEU GLY TRP GLU ALA ALA THR GLU MET SEQRES 13 D 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG GLY ASP SEQRES 14 D 243 MET ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 D 243 ASN LEU LYS THR THR TYR ARG SER LYS ASN PRO ALA LYS SEQRES 16 D 243 ASN LEU LYS MET PRO GLY VAL TYR PHE VAL ASP HIS ARG SEQRES 17 D 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 D 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 D 243 PRO SER LYS LEU GLY HIS LYS LEU ASN MODRES 3U8C NRQ A 63 MET MODRES 3U8C NRQ A 63 TYR MODRES 3U8C NRQ A 63 GLY MODRES 3U8C NRQ B 63 MET MODRES 3U8C NRQ B 63 TYR MODRES 3U8C NRQ B 63 GLY MODRES 3U8C NRQ C 63 MET MODRES 3U8C NRQ C 63 TYR MODRES 3U8C NRQ C 63 GLY MODRES 3U8C NRQ D 63 MET MODRES 3U8C NRQ D 63 TYR MODRES 3U8C NRQ D 63 GLY HET NRQ A 63 46 HET NRQ B 63 46 HET NRQ C 63 46 HET NRQ D 63 46 HET GOL A 234 6 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETNAM GOL GLYCEROL HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 NRQ 4(C16 H17 N3 O4 S) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *526(H2 O) HELIX 1 1 ALA A 54 PHE A 62 5 9 HELIX 2 2 TRP A 80 PHE A 84 5 5 HELIX 3 3 PRO B 34 GLU B 36 5 3 HELIX 4 4 ALA B 54 PHE B 62 5 9 HELIX 5 5 ASP B 78 SER B 83 1 6 HELIX 6 6 ALA C 54 PHE C 62 5 9 HELIX 7 7 SER C 66 ILE C 70 5 5 HELIX 8 8 TRP C 80 PHE C 84 5 5 HELIX 9 9 ALA D 54 PHE D 62 5 9 HELIX 10 10 ASP D 78 PHE D 84 1 7 SHEET 1 A11 ASN A 71 HIS A 72 0 SHEET 2 A11 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 A11 THR A 38 GLU A 47 -1 N MET A 41 O GLN A 213 SHEET 4 A11 HIS A 22 LYS A 33 -1 N THR A 27 O LYS A 44 SHEET 5 A11 MET A 9 VAL A 19 -1 N MET A 15 O CYS A 26 SHEET 6 A11 CYS A 114 VAL A 124 1 O VAL A 119 N TYR A 14 SHEET 7 A11 VAL A 101 GLN A 111 -1 N SER A 109 O ILE A 116 SHEET 8 A11 PHE A 88 TYR A 96 -1 N PHE A 88 O THR A 108 SHEET 9 A11 HIS A 169 SER A 180 -1 O ASN A 173 N THR A 95 SHEET 10 A11 GLY A 153 LEU A 164 -1 N LEU A 154 O TYR A 178 SHEET 11 A11 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 B 6 ASN A 71 HIS A 72 0 SHEET 2 B 6 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 B 6 TYR A 193 ALA A 205 -1 N LYS A 203 O GLU A 212 SHEET 4 B 6 ALA A 143 ALA A 150 -1 N LEU A 147 O TYR A 193 SHEET 5 B 6 GLY A 153 LEU A 164 -1 O ARG A 157 N MET A 146 SHEET 6 B 6 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 C11 ASN B 71 HIS B 72 0 SHEET 2 C11 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 C11 THR B 38 GLU B 47 -1 N ILE B 43 O VAL B 211 SHEET 4 C11 HIS B 22 LYS B 33 -1 N GLU B 29 O ARG B 42 SHEET 5 C11 MET B 9 VAL B 19 -1 N MET B 15 O CYS B 26 SHEET 6 C11 CYS B 114 VAL B 124 1 O GLY B 123 N THR B 18 SHEET 7 C11 VAL B 101 GLN B 111 -1 N GLN B 111 O CYS B 114 SHEET 8 C11 PHE B 88 TYR B 96 -1 N ARG B 92 O ALA B 104 SHEET 9 C11 HIS B 169 SER B 180 -1 O ARG B 179 N THR B 89 SHEET 10 C11 GLY B 153 LEU B 164 -1 N LEU B 154 O TYR B 178 SHEET 11 C11 THR B 137 TRP B 140 -1 N LEU B 138 O LYS B 163 SHEET 1 D 6 ASN B 71 HIS B 72 0 SHEET 2 D 6 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 D 6 TYR B 193 ALA B 205 -1 N ILE B 202 O GLU B 212 SHEET 4 D 6 ALA B 143 ALA B 150 -1 N LEU B 147 O TYR B 193 SHEET 5 D 6 GLY B 153 LEU B 164 -1 O ARG B 157 N MET B 146 SHEET 6 D 6 THR B 137 TRP B 140 -1 N LEU B 138 O LYS B 163 SHEET 1 E11 ASN C 71 HIS C 72 0 SHEET 2 E11 TYR C 210 ARG C 220 1 O ALA C 219 N ASN C 71 SHEET 3 E11 THR C 38 GLU C 47 -1 N ILE C 43 O VAL C 211 SHEET 4 E11 HIS C 22 GLY C 32 -1 N THR C 27 O LYS C 44 SHEET 5 E11 MET C 9 VAL C 19 -1 N LEU C 13 O SER C 28 SHEET 6 E11 CYS C 114 VAL C 124 1 O VAL C 119 N TYR C 14 SHEET 7 E11 VAL C 101 GLN C 111 -1 N SER C 109 O ILE C 116 SHEET 8 E11 PHE C 88 TYR C 96 -1 N PHE C 88 O THR C 108 SHEET 9 E11 HIS C 169 SER C 180 -1 O ARG C 179 N THR C 89 SHEET 10 E11 GLY C 153 LEU C 164 -1 N LEU C 154 O TYR C 178 SHEET 11 E11 THR C 137 TRP C 140 -1 N GLY C 139 O LYS C 163 SHEET 1 F 6 ASN C 71 HIS C 72 0 SHEET 2 F 6 TYR C 210 ARG C 220 1 O ALA C 219 N ASN C 71 SHEET 3 F 6 TYR C 193 ALA C 205 -1 N GLU C 200 O HIS C 214 SHEET 4 F 6 ALA C 143 ALA C 150 -1 N LEU C 147 O TYR C 193 SHEET 5 F 6 GLY C 153 LEU C 164 -1 O GLY C 153 N ALA C 150 SHEET 6 F 6 THR C 137 TRP C 140 -1 N GLY C 139 O LYS C 163 SHEET 1 G11 ASN D 71 HIS D 72 0 SHEET 2 G11 TYR D 210 ARG D 220 1 O ALA D 219 N ASN D 71 SHEET 3 G11 THR D 38 GLU D 47 -1 N ILE D 43 O VAL D 211 SHEET 4 G11 HIS D 22 LYS D 33 -1 N GLU D 29 O ARG D 42 SHEET 5 G11 MET D 9 VAL D 19 -1 N MET D 15 O CYS D 26 SHEET 6 G11 CYS D 114 VAL D 124 1 O VAL D 119 N TYR D 14 SHEET 7 G11 VAL D 101 GLN D 111 -1 N THR D 105 O LYS D 120 SHEET 8 G11 PHE D 88 TYR D 96 -1 N THR D 94 O LEU D 102 SHEET 9 G11 HIS D 169 SER D 180 -1 O THR D 177 N GLU D 91 SHEET 10 G11 GLY D 153 LEU D 164 -1 N LEU D 154 O TYR D 178 SHEET 11 G11 THR D 137 TRP D 140 -1 N LEU D 138 O LYS D 163 SHEET 1 H 6 ASN D 71 HIS D 72 0 SHEET 2 H 6 TYR D 210 ARG D 220 1 O ALA D 219 N ASN D 71 SHEET 3 H 6 TYR D 193 ALA D 205 -1 N ILE D 202 O GLU D 212 SHEET 4 H 6 ALA D 143 ALA D 150 -1 N LEU D 147 O TYR D 193 SHEET 5 H 6 GLY D 153 LEU D 164 -1 O ARG D 157 N MET D 146 SHEET 6 H 6 THR D 137 TRP D 140 -1 N LEU D 138 O LYS D 163 LINK C PHE A 62 N1 ANRQ A 63 1555 1555 1.31 LINK C PHE A 62 N1 BNRQ A 63 1555 1555 1.45 LINK C3 ANRQ A 63 N SER A 66 1555 1555 1.34 LINK C3 BNRQ A 63 N SER A 66 1555 1555 1.40 LINK C PHE B 62 N1 ANRQ B 63 1555 1555 1.32 LINK C PHE B 62 N1 BNRQ B 63 1555 1555 1.45 LINK C3 ANRQ B 63 N SER B 66 1555 1555 1.31 LINK C3 BNRQ B 63 N SER B 66 1555 1555 1.35 LINK C PHE C 62 N1 ANRQ C 63 1555 1555 1.42 LINK C PHE C 62 N1 BNRQ C 63 1555 1555 1.39 LINK C3 ANRQ C 63 N SER C 66 1555 1555 1.44 LINK C3 BNRQ C 63 N SER C 66 1555 1555 1.33 LINK C PHE D 62 N1 ANRQ D 63 1555 1555 1.46 LINK C PHE D 62 N1 BNRQ D 63 1555 1555 1.40 LINK C3 ANRQ D 63 N SER D 66 1555 1555 1.30 LINK C3 BNRQ D 63 N SER D 66 1555 1555 1.37 CISPEP 1 GLY A 49 PRO A 50 0 -8.56 CISPEP 2 PHE A 84 PRO A 85 0 10.39 CISPEP 3 GLY B 49 PRO B 50 0 -4.04 CISPEP 4 PHE B 84 PRO B 85 0 10.23 CISPEP 5 GLY C 49 PRO C 50 0 -4.19 CISPEP 6 PHE C 84 PRO C 85 0 8.08 CISPEP 7 PRO C 183 ALA C 184 0 7.96 CISPEP 8 GLY D 49 PRO D 50 0 -5.42 CISPEP 9 PHE D 84 PRO D 85 0 6.73 SITE 1 AC1 6 GLY A 168 HIS A 169 HOH A 260 HOH A 326 SITE 2 AC1 6 ALA D 150 LYS D 207 CRYST1 49.564 69.336 73.699 78.69 83.60 71.97 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020176 -0.006567 -0.001157 0.00000 SCALE2 0.000000 0.015167 -0.002633 0.00000 SCALE3 0.000000 0.000000 0.013858 0.00000