HEADER LIGASE 19-OCT-11 3U9R TITLE CRYSTAL STRUCTURE OF P. AERUGINOSA 3-METHYLCROTONYL-COA CARBOXYLASE TITLE 2 (MCC), BETA SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLCROTONYL-COA CARBOXYLASE, BETA-SUBUNIT; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: MCC BETA; COMPND 5 EC: 6.4.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LIUB, PA2014; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOXYLTRANSFERASE, BETA-BETA-ALPHA SUPERHELIX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.HUANG,L.TONG REVDAT 3 28-FEB-24 3U9R 1 REMARK SEQADV REVDAT 2 23-JAN-13 3U9R 1 JRNL REVDAT 1 14-DEC-11 3U9R 0 JRNL AUTH C.S.HUANG,P.GE,Z.H.ZHOU,L.TONG JRNL TITL AN UNANTICIPATED ARCHITECTURE OF THE 750-KDA {ALPHA}6{BETA}6 JRNL TITL 2 HOLOENZYME OF 3-METHYLCROTONYL-COA CARBOXYLASE JRNL REF NATURE V. 481 219 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22158123 JRNL DOI 10.1038/NATURE10691 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1063730.700 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 141517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7108 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10607 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 569 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 969 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.31000 REMARK 3 B22 (A**2) : -3.31000 REMARK 3 B33 (A**2) : 6.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.510 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.130 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.700 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.080 ; 5.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 76.56 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : BTI.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : BTI.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3U9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141517 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7762 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M MAGNESIUM SULFATE, 0.1 M MES, PH REMARK 280 6.5, UNDER OIL, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 96.20000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.54110 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.58667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 96.20000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 55.54110 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.58667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 96.20000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 55.54110 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.58667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 96.20000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 55.54110 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.58667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 96.20000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 55.54110 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.58667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 96.20000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 55.54110 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.58667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 111.08219 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 91.17333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 111.08219 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 91.17333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 111.08219 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 91.17333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 111.08219 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 91.17333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 111.08219 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 91.17333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 111.08219 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 91.17333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 103590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -314.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 21 REMARK 465 VAL B 22 REMARK 465 PRO B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 27 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 838 O HOH B 997 2.18 REMARK 500 O TYR B 146 O HOH B 998 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 838 O HOH B 838 5555 2.05 REMARK 500 O HOH B 1210 O HOH B 1210 5555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 473 SD MET B 473 CE -0.345 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 185 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 PRO B 186 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG B 460 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 172 71.10 -164.55 REMARK 500 HIS B 190 -168.36 -105.53 REMARK 500 ALA B 218 -135.30 55.41 REMARK 500 GLN B 236 -60.10 -162.09 REMARK 500 ASN B 373 42.64 -147.19 REMARK 500 ASN B 403 81.16 -152.58 REMARK 500 ARG B 492 21.60 -70.33 REMARK 500 ALA B 493 14.22 -144.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 457 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE B 581 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 581 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 591 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 592 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N6R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HOLOENZYME OF PROPIONYL-COA CARBOXYLASE REMARK 900 (PCC) REMARK 900 RELATED ID: 3U9S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P. AERUGINOSA 3-METHYLCROTONYL-COA CARBOXYLASE REMARK 900 (MCC) 750 KD HOLOENZYME, COA COMPLEX REMARK 900 RELATED ID: 3U9T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P. AERUGINOSA 3-METHYLCROTONYL-COA CARBOXYLASE REMARK 900 (MCC) 750 KD HOLOENZYME, FREE ENZYME DBREF 3U9R B 28 563 UNP Q9I297 Q9I297_PSEAE 1 535 SEQADV 3U9R MET B 8 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R GLY B 9 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R SER B 10 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R SER B 11 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R HIS B 12 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R HIS B 13 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R HIS B 14 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R HIS B 15 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R HIS B 16 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R HIS B 17 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R SER B 18 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R SER B 19 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R GLY B 20 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R LEU B 21 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R VAL B 22 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R PRO B 23 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R ARG B 24 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R GLY B 25 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R SER B 26 UNP Q9I297 EXPRESSION TAG SEQADV 3U9R HIS B 27 UNP Q9I297 EXPRESSION TAG SEQRES 1 B 555 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 555 LEU VAL PRO ARG GLY SER HIS MET ALA ILE LEU HIS THR SEQRES 3 B 555 GLN ILE ASN PRO ARG SER ALA GLU PHE ALA ALA ASN ALA SEQRES 4 B 555 ALA THR MET LEU GLU GLN VAL ASN ALA LEU ARG THR LEU SEQRES 5 B 555 LEU GLY ARG ILE HIS GLU GLY GLY GLY SER ALA ALA GLN SEQRES 6 B 555 ALA ARG HIS SER ALA ARG GLY LYS LEU LEU VAL ARG GLU SEQRES 7 B 555 ARG ILE ASN ARG LEU LEU ASP PRO GLY SER PRO PHE LEU SEQRES 8 B 555 GLU LEU SER ALA LEU ALA ALA HIS GLU VAL TYR GLY GLU SEQRES 9 B 555 GLU VAL ALA ALA ALA GLY ILE VAL ALA GLY ILE GLY ARG SEQRES 10 B 555 VAL GLU GLY VAL GLU CYS MET ILE VAL GLY ASN ASP ALA SEQRES 11 B 555 THR VAL LYS GLY GLY THR TYR TYR PRO LEU THR VAL LYS SEQRES 12 B 555 LYS HIS LEU ARG ALA GLN ALA ILE ALA LEU GLU ASN ARG SEQRES 13 B 555 LEU PRO CYS ILE TYR LEU VAL ASP SER GLY GLY ALA ASN SEQRES 14 B 555 LEU PRO ARG GLN ASP GLU VAL PHE PRO ASP ARG GLU HIS SEQRES 15 B 555 PHE GLY ARG ILE PHE PHE ASN GLN ALA ASN MET SER ALA SEQRES 16 B 555 ARG GLY ILE PRO GLN ILE ALA VAL VAL MET GLY SER CYS SEQRES 17 B 555 THR ALA GLY GLY ALA TYR VAL PRO ALA MET SER ASP GLU SEQRES 18 B 555 THR VAL MET VAL ARG GLU GLN ALA THR ILE PHE LEU ALA SEQRES 19 B 555 GLY PRO PRO LEU VAL LYS ALA ALA THR GLY GLU VAL VAL SEQRES 20 B 555 SER ALA GLU GLU LEU GLY GLY ALA ASP VAL HIS CYS LYS SEQRES 21 B 555 VAL SER GLY VAL ALA ASP HIS TYR ALA GLU ASP ASP ASP SEQRES 22 B 555 HIS ALA LEU ALA ILE ALA ARG ARG CYS VAL ALA ASN LEU SEQRES 23 B 555 ASN TRP ARG LYS GLN GLY GLN LEU GLN CYS ARG ALA PRO SEQRES 24 B 555 ARG ALA PRO LEU TYR PRO ALA GLU GLU LEU TYR GLY VAL SEQRES 25 B 555 ILE PRO ALA ASP SER LYS GLN PRO TYR ASP VAL ARG GLU SEQRES 26 B 555 VAL ILE ALA ARG LEU VAL ASP GLY SER GLU PHE ASP GLU SEQRES 27 B 555 PHE LYS ALA LEU PHE GLY THR THR LEU VAL CYS GLY PHE SEQRES 28 B 555 ALA HIS LEU HIS GLY TYR PRO ILE ALA ILE LEU ALA ASN SEQRES 29 B 555 ASN GLY ILE LEU PHE ALA GLU ALA ALA GLN LYS GLY ALA SEQRES 30 B 555 HIS PHE ILE GLU LEU ALA CYS GLN ARG GLY ILE PRO LEU SEQRES 31 B 555 LEU PHE LEU GLN ASN ILE THR GLY PHE MET VAL GLY GLN SEQRES 32 B 555 LYS TYR GLU ALA GLY GLY ILE ALA LYS HIS GLY ALA LYS SEQRES 33 B 555 LEU VAL THR ALA VAL ALA CYS ALA ARG VAL PRO LYS PHE SEQRES 34 B 555 THR VAL LEU ILE GLY GLY SER PHE GLY ALA GLY ASN TYR SEQRES 35 B 555 GLY MET CYS GLY ARG ALA TYR ASP PRO ARG PHE LEU TRP SEQRES 36 B 555 MET TRP PRO ASN ALA ARG ILE GLY VAL MET GLY GLY GLU SEQRES 37 B 555 GLN ALA ALA GLY VAL LEU ALA GLN VAL LYS ARG GLU GLN SEQRES 38 B 555 ALA GLU ARG ALA GLY GLN GLN LEU GLY VAL GLU GLU GLU SEQRES 39 B 555 ALA LYS ILE LYS ALA PRO ILE LEU GLU GLN TYR GLU HIS SEQRES 40 B 555 GLN GLY HIS PRO TYR TYR SER SER ALA ARG LEU TRP ASP SEQRES 41 B 555 ASP GLY VAL ILE ASP PRO ALA GLN THR ARG GLU VAL LEU SEQRES 42 B 555 ALA LEU ALA LEU SER ALA ALA LEU ASN ALA PRO ILE GLU SEQRES 43 B 555 PRO THR ALA PHE GLY VAL PHE ARG MET HET 1PE B 581 13 HET SO4 B 591 5 HET SO4 B 592 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 2 1PE C10 H22 O6 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *969(H2 O) HELIX 1 1 SER B 39 GLU B 65 1 27 HELIX 2 2 GLY B 68 ARG B 78 1 11 HELIX 3 3 LEU B 82 LEU B 91 1 10 HELIX 4 4 VAL B 114 ALA B 117 5 4 HELIX 5 5 VAL B 140 THR B 144 5 5 HELIX 6 6 TYR B 146 ARG B 164 1 19 HELIX 7 7 ASN B 177 VAL B 184 5 8 HELIX 8 8 GLY B 192 ARG B 204 1 13 HELIX 9 9 THR B 217 GLY B 220 5 4 HELIX 10 10 ALA B 221 MET B 226 1 6 HELIX 11 11 GLY B 243 GLY B 252 1 10 HELIX 12 12 SER B 256 GLY B 262 1 7 HELIX 13 13 GLY B 262 VAL B 269 1 8 HELIX 14 14 ASP B 279 ASN B 293 1 15 HELIX 15 15 PRO B 313 GLU B 315 5 3 HELIX 16 16 GLU B 316 ILE B 321 1 6 HELIX 17 17 VAL B 331 ALA B 336 1 6 HELIX 18 18 ARG B 337 LEU B 338 5 2 HELIX 19 19 VAL B 339 GLU B 343 5 5 HELIX 20 20 PHE B 377 GLY B 395 1 19 HELIX 21 21 GLY B 410 GLY B 416 1 7 HELIX 22 22 GLY B 417 ALA B 432 1 16 HELIX 23 23 ALA B 447 MET B 452 1 6 HELIX 24 24 GLY B 454 ASP B 458 5 5 HELIX 25 25 GLY B 474 ARG B 492 1 19 HELIX 26 26 GLY B 498 HIS B 518 1 21 HELIX 27 27 HIS B 518 ARG B 525 1 8 HELIX 28 28 ASP B 533 ALA B 535 5 3 HELIX 29 29 GLN B 536 LEU B 549 1 14 SHEET 1 A 7 PHE B 97 LEU B 100 0 SHEET 2 A 7 ILE B 119 VAL B 126 -1 O ALA B 121 N LEU B 100 SHEET 3 A 7 VAL B 129 ASN B 136 -1 O ILE B 133 N GLY B 122 SHEET 4 A 7 CYS B 167 VAL B 171 1 O LEU B 170 N VAL B 134 SHEET 5 A 7 GLN B 208 VAL B 212 1 O VAL B 211 N TYR B 169 SHEET 6 A 7 GLU B 229 VAL B 233 1 O VAL B 231 N VAL B 212 SHEET 7 A 7 HIS B 275 ALA B 277 1 O ALA B 277 N MET B 232 SHEET 1 B 6 ASP B 345 PHE B 347 0 SHEET 2 B 6 LEU B 355 LEU B 362 -1 O CYS B 357 N PHE B 347 SHEET 3 B 6 TYR B 365 ASN B 372 -1 O ILE B 369 N GLY B 358 SHEET 4 B 6 LEU B 398 ILE B 404 1 O LEU B 399 N LEU B 370 SHEET 5 B 6 LYS B 436 PHE B 445 1 O PHE B 437 N PHE B 400 SHEET 6 B 6 PHE B 461 MET B 464 1 O TRP B 463 N LEU B 440 SHEET 1 C 6 ASP B 345 PHE B 347 0 SHEET 2 C 6 LEU B 355 LEU B 362 -1 O CYS B 357 N PHE B 347 SHEET 3 C 6 TYR B 365 ASN B 372 -1 O ILE B 369 N GLY B 358 SHEET 4 C 6 LEU B 398 ILE B 404 1 O LEU B 399 N LEU B 370 SHEET 5 C 6 LYS B 436 PHE B 445 1 O PHE B 437 N PHE B 400 SHEET 6 C 6 ARG B 469 GLY B 471 1 O GLY B 471 N SER B 444 SITE 1 AC1 10 ALA B 43 ALA B 46 ALA B 47 GLU B 476 SITE 2 AC1 10 VAL B 499 ALA B 503 LYS B 506 LEU B 510 SITE 3 AC1 10 HOH B1431 HOH B1434 SITE 1 AC2 7 ARG B 125 LYS B 298 TYR B 365 SER B 546 SITE 2 AC2 7 HOH B 809 HOH B 900 HOH B1075 SITE 1 AC3 8 ARG B 74 ARG B 78 HOH B 756 HOH B 823 SITE 2 AC3 8 HOH B 867 HOH B1267 HOH B1277 HOH B1353 CRYST1 192.400 192.400 136.760 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005198 0.003001 0.000000 0.00000 SCALE2 0.000000 0.006002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007312 0.00000