data_3UA6 # _entry.id 3UA6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UA6 RCSB RCSB068499 WWPDB D_1000068499 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1SHF . unspecified PDB 3UA7 . unspecified # _pdbx_database_status.entry_id 3UA6 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-21 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Camara-Artigas, A.' 1 'Martin-Garcia, J.M.' 2 # _citation.id primary _citation.title 'The promiscuous binding of the Fyn SH3 domain to a peptide from the NS5A protein.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 1030 _citation.page_last 1040 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22868769 _citation.pdbx_database_id_DOI 10.1107/S0907444912019798 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Martin-Garcia, J.M.' 1 primary 'Luque, I.' 2 primary 'Ruiz-Sanz, J.' 3 primary 'Camara-Artigas, A.' 4 # _cell.length_a 72.293 _cell.length_b 47.074 _cell.length_c 42.467 _cell.angle_alpha 90.000 _cell.angle_beta 98.520 _cell.angle_gamma 90.000 _cell.entry_id 3UA6 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3UA6 _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein kinase Fyn' 7171.764 2 2.7.10.2 ? 'SH3 domain (UNP residues 81-143)' ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn 'FORMIC ACID' 46.025 6 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 5 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proto-oncogene Syn, Proto-oncogene c-Fyn, Src-like kinase, SLK, p59-Fyn' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MGTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDS _entity_poly.pdbx_seq_one_letter_code_can MGTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 THR n 1 4 GLY n 1 5 VAL n 1 6 THR n 1 7 LEU n 1 8 PHE n 1 9 VAL n 1 10 ALA n 1 11 LEU n 1 12 TYR n 1 13 ASP n 1 14 TYR n 1 15 GLU n 1 16 ALA n 1 17 ARG n 1 18 THR n 1 19 GLU n 1 20 ASP n 1 21 ASP n 1 22 LEU n 1 23 SER n 1 24 PHE n 1 25 HIS n 1 26 LYS n 1 27 GLY n 1 28 GLU n 1 29 LYS n 1 30 PHE n 1 31 GLN n 1 32 ILE n 1 33 LEU n 1 34 ASN n 1 35 SER n 1 36 SER n 1 37 GLU n 1 38 GLY n 1 39 ASP n 1 40 TRP n 1 41 TRP n 1 42 GLU n 1 43 ALA n 1 44 ARG n 1 45 SER n 1 46 LEU n 1 47 THR n 1 48 THR n 1 49 GLY n 1 50 GLU n 1 51 THR n 1 52 GLY n 1 53 TYR n 1 54 ILE n 1 55 PRO n 1 56 SER n 1 57 ASN n 1 58 TYR n 1 59 VAL n 1 60 ALA n 1 61 PRO n 1 62 VAL n 1 63 ASP n 1 64 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene FYN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FYN_HUMAN _struct_ref.pdbx_db_accession P06241 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDS _struct_ref.pdbx_align_begin 81 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UA6 A 2 ? 64 ? P06241 81 ? 143 ? 81 143 2 1 3UA6 B 2 ? 64 ? P06241 81 ? 143 ? 81 143 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UA6 MET A 1 ? UNP P06241 ? ? 'INITIATING METHIONINE' 80 1 2 3UA6 MET B 1 ? UNP P06241 ? ? 'INITIATING METHIONINE' 80 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3UA6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '5.5 M sodium formate, 0.1 M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker Microfocus (Montel Optics)' _diffrn_detector.pdbx_collection_date 2006-11-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3UA6 _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 41.998 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 12182 _reflns.number_obs 11459 _reflns.percent_possible_obs 94.1 _reflns.pdbx_Rmerge_I_obs 0.0274 _reflns.pdbx_Rsym_value 0.0274 _reflns.pdbx_netI_over_sigmaI 21.66 _reflns.B_iso_Wilson_estimate 21.92 _reflns.pdbx_redundancy 2.49 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.95 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 72.4 _reflns_shell.Rmerge_I_obs 0.1511 _reflns_shell.meanI_over_sigI_obs 3.78 _reflns_shell.pdbx_Rsym_value 0.1511 _reflns_shell.pdbx_redundancy 0.87 _reflns_shell.number_unique_all 1109 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UA6 _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 19.66 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.06 _refine.ls_number_reflns_obs 11447 _refine.ls_number_reflns_all 12170 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY ; _refine.ls_R_factor_all 0.1801 _refine.ls_R_factor_obs 0.1801 _refine.ls_R_factor_R_work 0.1770 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2464 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 544 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.454 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0500 _refine.aniso_B[2][2] 0.5300 _refine.aniso_B[3][3] -0.5000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0600 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9580 _refine.correlation_coeff_Fo_to_Fc_free 0.9210 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1480 _refine.overall_SU_ML 0.0860 _refine.overall_SU_B 6.0520 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1SHF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 67.820 _refine.B_iso_min 2.000 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.137 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 943 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 1051 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 19.66 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1018 0.020 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1377 1.978 1.947 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 121 7.304 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 54 39.365 24.444 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 151 13.380 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 5 11.186 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 142 0.139 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 795 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 603 2.006 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 953 2.933 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 415 4.354 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 422 6.731 4.500 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'TIGHT POSITIONAL' A 114 0.500 0.050 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 293 0.760 0.500 2 ? ? ? 'X-RAY DIFFRACTION' 1 1 'TIGHT THERMAL' A 114 1.790 0.500 3 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 293 2.190 2.000 4 ? ? ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 54.06 _refine_ls_shell.number_reflns_R_work 454 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1880 _refine_ls_shell.R_factor_R_free 0.2470 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 479 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 2 A 85 A 113 ? . . . . . . . . 1 2 1 2 B 85 B 113 ? . . . . . . . . 1 1 2 4 A 118 A 140 ? . . . . . . . . 1 2 2 4 B 118 B 140 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3UA6 _struct.title 'Crystal Structure of the Human Fyn SH3 domain' _struct.pdbx_descriptor 'Tyrosine-protein kinase Fyn (E.C.2.7.10.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UA6 _struct_keywords.text 'beta barrel, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 5 ? O N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A VAL 59 O ? ? ? 1_555 H NA . NA ? ? A VAL 138 A NA 146 1_555 ? ? ? ? ? ? ? 2.141 ? metalc2 metalc ? ? A ASP 21 O ? ? ? 1_555 I NA . NA ? ? A ASP 100 A NA 147 1_555 ? ? ? ? ? ? ? 2.157 ? metalc3 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 2 B HOH 44 1_555 ? ? ? ? ? ? ? 2.203 ? metalc4 metalc ? ? B SER 56 O ? ? ? 1_555 M NA . NA ? ? B SER 135 B NA 2 1_555 ? ? ? ? ? ? ? 2.293 ? metalc5 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 146 A HOH 14 1_555 ? ? ? ? ? ? ? 2.318 ? metalc6 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 147 A HOH 40 1_555 ? ? ? ? ? ? ? 2.331 ? metalc7 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 146 A HOH 17 1_555 ? ? ? ? ? ? ? 2.359 ? metalc8 metalc ? ? H NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 146 B HOH 41 1_555 ? ? ? ? ? ? ? 2.442 ? metalc9 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 2 B HOH 5 1_555 ? ? ? ? ? ? ? 2.464 ? metalc10 metalc ? ? B VAL 59 O ? ? ? 1_555 M NA . NA ? ? B VAL 138 B NA 2 1_555 ? ? ? ? ? ? ? 2.515 ? metalc11 metalc ? ? A THR 18 O ? ? ? 1_555 I NA . NA ? ? A THR 97 A NA 147 1_555 ? ? ? ? ? ? ? 2.624 ? metalc12 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 147 A HOH 21 1_555 ? ? ? ? ? ? ? 2.659 ? metalc13 metalc ? ? A SER 56 O ? ? ? 1_555 H NA . NA ? ? A SER 135 A NA 146 1_555 ? ? ? ? ? ? ? 2.754 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 37 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 116 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 38 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 117 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.62 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 51 ? PRO A 55 ? THR A 130 PRO A 134 A 2 TRP A 40 ? SER A 45 ? TRP A 119 SER A 124 A 3 LYS A 29 ? ASN A 34 ? LYS A 108 ASN A 113 A 4 LEU A 7 ? ALA A 10 ? LEU A 86 ALA A 89 A 5 VAL A 59 ? PRO A 61 ? VAL A 138 PRO A 140 B 1 THR B 51 ? PRO B 55 ? THR B 130 PRO B 134 B 2 TRP B 40 ? SER B 45 ? TRP B 119 SER B 124 B 3 LYS B 29 ? GLN B 31 ? LYS B 108 GLN B 110 B 4 LEU B 7 ? ALA B 10 ? LEU B 86 ALA B 89 B 5 VAL B 59 ? PRO B 61 ? VAL B 138 PRO B 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 54 ? O ILE A 133 N TRP A 41 ? N TRP A 120 A 2 3 O GLU A 42 ? O GLU A 121 N LEU A 33 ? N LEU A 112 A 3 4 O PHE A 30 ? O PHE A 109 N PHE A 8 ? N PHE A 87 A 4 5 N VAL A 9 ? N VAL A 88 O ALA A 60 ? O ALA A 139 B 1 2 O GLY B 52 ? O GLY B 131 N ALA B 43 ? N ALA B 122 B 2 3 O ARG B 44 ? O ARG B 123 N GLN B 31 ? N GLN B 110 B 3 4 O PHE B 30 ? O PHE B 109 N PHE B 8 ? N PHE B 87 B 4 5 N VAL B 9 ? N VAL B 88 O ALA B 60 ? O ALA B 139 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 1' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A 2' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE FMT A 144' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE FMT A 145' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE FMT A 3' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE FMT B 4' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 146' AC8 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA B 2' AC9 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 147' BC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FMT A 148' BC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FMT A 149' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH N . ? HOH A 43 . ? 1_555 ? 2 AC1 4 ASN A 57 ? ASN A 136 . ? 1_555 ? 3 AC1 4 FMT J . ? FMT A 148 . ? 1_555 ? 4 AC1 4 GLY B 4 ? GLY B 83 . ? 4_444 ? 5 AC2 7 GLU A 28 ? GLU A 107 . ? 1_555 ? 6 AC2 7 LYS A 29 ? LYS A 108 . ? 1_555 ? 7 AC2 7 THR A 47 ? THR A 126 . ? 1_555 ? 8 AC2 7 ASP B 39 ? ASP B 118 . ? 4_445 ? 9 AC2 7 PRO B 55 ? PRO B 134 . ? 4_445 ? 10 AC2 7 SER B 56 ? SER B 135 . ? 4_445 ? 11 AC2 7 ASN B 57 ? ASN B 136 . ? 4_445 ? 12 AC3 3 TYR A 12 ? TYR A 91 . ? 1_555 ? 13 AC3 3 ASP A 13 ? ASP A 92 . ? 1_555 ? 14 AC3 3 HIS B 25 ? HIS B 104 . ? 1_555 ? 15 AC4 3 FMT G . ? FMT A 3 . ? 1_555 ? 16 AC4 3 VAL A 9 ? VAL A 88 . ? 1_555 ? 17 AC4 3 PRO A 61 ? PRO A 140 . ? 1_555 ? 18 AC5 7 HOH N . ? HOH A 8 . ? 1_555 ? 19 AC5 7 ALA A 10 ? ALA A 89 . ? 1_555 ? 20 AC5 7 LEU A 11 ? LEU A 90 . ? 1_555 ? 21 AC5 7 LYS A 26 ? LYS A 105 . ? 1_555 ? 22 AC5 7 FMT F . ? FMT A 145 . ? 1_555 ? 23 AC5 7 HIS B 25 ? HIS B 104 . ? 1_555 ? 24 AC5 7 LYS B 26 ? LYS B 105 . ? 1_555 ? 25 AC6 6 HOH N . ? HOH A 49 . ? 4_455 ? 26 AC6 6 ASP B 13 ? ASP B 92 . ? 1_555 ? 27 AC6 6 TYR B 14 ? TYR B 93 . ? 1_555 ? 28 AC6 6 GLU B 15 ? GLU B 94 . ? 1_555 ? 29 AC6 6 ARG B 17 ? ARG B 96 . ? 1_555 ? 30 AC6 6 TYR B 58 ? TYR B 137 . ? 1_555 ? 31 AC7 5 HOH N . ? HOH A 14 . ? 1_555 ? 32 AC7 5 HOH N . ? HOH A 17 . ? 1_555 ? 33 AC7 5 SER A 56 ? SER A 135 . ? 1_555 ? 34 AC7 5 VAL A 59 ? VAL A 138 . ? 1_555 ? 35 AC7 5 HOH O . ? HOH B 41 . ? 1_555 ? 36 AC8 4 HOH O . ? HOH B 5 . ? 1_555 ? 37 AC8 4 HOH O . ? HOH B 44 . ? 1_555 ? 38 AC8 4 SER B 56 ? SER B 135 . ? 1_555 ? 39 AC8 4 VAL B 59 ? VAL B 138 . ? 1_555 ? 40 AC9 5 HOH N . ? HOH A 21 . ? 1_555 ? 41 AC9 5 HOH N . ? HOH A 40 . ? 1_555 ? 42 AC9 5 ALA A 16 ? ALA A 95 . ? 1_555 ? 43 AC9 5 THR A 18 ? THR A 97 . ? 1_555 ? 44 AC9 5 ASP A 21 ? ASP A 100 . ? 1_555 ? 45 BC1 4 GOL C . ? GOL A 1 . ? 1_555 ? 46 BC1 4 ARG A 17 ? ARG A 96 . ? 1_555 ? 47 BC1 4 THR B 6 ? THR B 85 . ? 4_444 ? 48 BC1 4 GLN B 31 ? GLN B 110 . ? 4_444 ? 49 BC2 4 LYS A 26 ? LYS A 105 . ? 1_555 ? 50 BC2 4 GLY A 27 ? GLY A 106 . ? 1_555 ? 51 BC2 4 HOH O . ? HOH B 5 . ? 4_445 ? 52 BC2 4 ASN B 57 ? ASN B 136 . ? 4_445 ? # _atom_sites.entry_id 3UA6 _atom_sites.fract_transf_matrix[1][1] 0.013833 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002072 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021243 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023810 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 80 ? ? ? A . n A 1 2 GLY 2 81 ? ? ? A . n A 1 3 THR 3 82 ? ? ? A . n A 1 4 GLY 4 83 ? ? ? A . n A 1 5 VAL 5 84 ? ? ? A . n A 1 6 THR 6 85 85 THR THR A . n A 1 7 LEU 7 86 86 LEU LEU A . n A 1 8 PHE 8 87 87 PHE PHE A . n A 1 9 VAL 9 88 88 VAL VAL A . n A 1 10 ALA 10 89 89 ALA ALA A . n A 1 11 LEU 11 90 90 LEU LEU A . n A 1 12 TYR 12 91 91 TYR TYR A . n A 1 13 ASP 13 92 92 ASP ASP A . n A 1 14 TYR 14 93 93 TYR TYR A . n A 1 15 GLU 15 94 94 GLU GLU A . n A 1 16 ALA 16 95 95 ALA ALA A . n A 1 17 ARG 17 96 96 ARG ARG A . n A 1 18 THR 18 97 97 THR THR A . n A 1 19 GLU 19 98 98 GLU GLU A . n A 1 20 ASP 20 99 99 ASP ASP A . n A 1 21 ASP 21 100 100 ASP ASP A . n A 1 22 LEU 22 101 101 LEU LEU A . n A 1 23 SER 23 102 102 SER SER A . n A 1 24 PHE 24 103 103 PHE PHE A . n A 1 25 HIS 25 104 104 HIS HIS A . n A 1 26 LYS 26 105 105 LYS LYS A . n A 1 27 GLY 27 106 106 GLY GLY A . n A 1 28 GLU 28 107 107 GLU GLU A . n A 1 29 LYS 29 108 108 LYS LYS A . n A 1 30 PHE 30 109 109 PHE PHE A . n A 1 31 GLN 31 110 110 GLN GLN A . n A 1 32 ILE 32 111 111 ILE ILE A . n A 1 33 LEU 33 112 112 LEU LEU A . n A 1 34 ASN 34 113 113 ASN ASN A . n A 1 35 SER 35 114 114 SER SER A . n A 1 36 SER 36 115 115 SER SER A . n A 1 37 GLU 37 116 116 GLU GLU A . n A 1 38 GLY 38 117 117 GLY GLY A . n A 1 39 ASP 39 118 118 ASP ASP A . n A 1 40 TRP 40 119 119 TRP TRP A . n A 1 41 TRP 41 120 120 TRP TRP A . n A 1 42 GLU 42 121 121 GLU GLU A . n A 1 43 ALA 43 122 122 ALA ALA A . n A 1 44 ARG 44 123 123 ARG ARG A . n A 1 45 SER 45 124 124 SER SER A . n A 1 46 LEU 46 125 125 LEU LEU A . n A 1 47 THR 47 126 126 THR THR A . n A 1 48 THR 48 127 127 THR THR A . n A 1 49 GLY 49 128 128 GLY GLY A . n A 1 50 GLU 50 129 129 GLU GLU A . n A 1 51 THR 51 130 130 THR THR A . n A 1 52 GLY 52 131 131 GLY GLY A . n A 1 53 TYR 53 132 132 TYR TYR A . n A 1 54 ILE 54 133 133 ILE ILE A . n A 1 55 PRO 55 134 134 PRO PRO A . n A 1 56 SER 56 135 135 SER SER A . n A 1 57 ASN 57 136 136 ASN ASN A . n A 1 58 TYR 58 137 137 TYR TYR A . n A 1 59 VAL 59 138 138 VAL VAL A . n A 1 60 ALA 60 139 139 ALA ALA A . n A 1 61 PRO 61 140 140 PRO PRO A . n A 1 62 VAL 62 141 141 VAL VAL A . n A 1 63 ASP 63 142 ? ? ? A . n A 1 64 SER 64 143 ? ? ? A . n B 1 1 MET 1 80 ? ? ? B . n B 1 2 GLY 2 81 ? ? ? B . n B 1 3 THR 3 82 ? ? ? B . n B 1 4 GLY 4 83 83 GLY GLY B . n B 1 5 VAL 5 84 84 VAL VAL B . n B 1 6 THR 6 85 85 THR THR B . n B 1 7 LEU 7 86 86 LEU LEU B . n B 1 8 PHE 8 87 87 PHE PHE B . n B 1 9 VAL 9 88 88 VAL VAL B . n B 1 10 ALA 10 89 89 ALA ALA B . n B 1 11 LEU 11 90 90 LEU LEU B . n B 1 12 TYR 12 91 91 TYR TYR B . n B 1 13 ASP 13 92 92 ASP ASP B . n B 1 14 TYR 14 93 93 TYR TYR B . n B 1 15 GLU 15 94 94 GLU GLU B . n B 1 16 ALA 16 95 95 ALA ALA B . n B 1 17 ARG 17 96 96 ARG ARG B . n B 1 18 THR 18 97 97 THR THR B . n B 1 19 GLU 19 98 98 GLU GLU B . n B 1 20 ASP 20 99 99 ASP ASP B . n B 1 21 ASP 21 100 100 ASP ASP B . n B 1 22 LEU 22 101 101 LEU LEU B . n B 1 23 SER 23 102 102 SER SER B . n B 1 24 PHE 24 103 103 PHE PHE B . n B 1 25 HIS 25 104 104 HIS HIS B . n B 1 26 LYS 26 105 105 LYS LYS B . n B 1 27 GLY 27 106 106 GLY GLY B . n B 1 28 GLU 28 107 107 GLU GLU B . n B 1 29 LYS 29 108 108 LYS LYS B . n B 1 30 PHE 30 109 109 PHE PHE B . n B 1 31 GLN 31 110 110 GLN GLN B . n B 1 32 ILE 32 111 111 ILE ILE B . n B 1 33 LEU 33 112 112 LEU LEU B . n B 1 34 ASN 34 113 113 ASN ASN B . n B 1 35 SER 35 114 114 SER SER B . n B 1 36 SER 36 115 115 SER SER B . n B 1 37 GLU 37 116 116 GLU GLU B . n B 1 38 GLY 38 117 117 GLY GLY B . n B 1 39 ASP 39 118 118 ASP ASP B . n B 1 40 TRP 40 119 119 TRP TRP B . n B 1 41 TRP 41 120 120 TRP TRP B . n B 1 42 GLU 42 121 121 GLU GLU B . n B 1 43 ALA 43 122 122 ALA ALA B . n B 1 44 ARG 44 123 123 ARG ARG B . n B 1 45 SER 45 124 124 SER SER B . n B 1 46 LEU 46 125 125 LEU LEU B . n B 1 47 THR 47 126 126 THR THR B . n B 1 48 THR 48 127 127 THR THR B . n B 1 49 GLY 49 128 128 GLY GLY B . n B 1 50 GLU 50 129 129 GLU GLU B . n B 1 51 THR 51 130 130 THR THR B . n B 1 52 GLY 52 131 131 GLY GLY B . n B 1 53 TYR 53 132 132 TYR TYR B . n B 1 54 ILE 54 133 133 ILE ILE B . n B 1 55 PRO 55 134 134 PRO PRO B . n B 1 56 SER 56 135 135 SER SER B . n B 1 57 ASN 57 136 136 ASN ASN B . n B 1 58 TYR 58 137 137 TYR TYR B . n B 1 59 VAL 59 138 138 VAL VAL B . n B 1 60 ALA 60 139 139 ALA ALA B . n B 1 61 PRO 61 140 140 PRO PRO B . n B 1 62 VAL 62 141 141 VAL VAL B . n B 1 63 ASP 63 142 142 ASP ASP B . n B 1 64 SER 64 143 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,N 2 1 B,L,M,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A VAL 59 ? A VAL 138 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? N HOH . ? A HOH 14 ? 1_555 168.4 ? 2 O ? A VAL 59 ? A VAL 138 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? N HOH . ? A HOH 17 ? 1_555 91.1 ? 3 O ? N HOH . ? A HOH 14 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? N HOH . ? A HOH 17 ? 1_555 94.0 ? 4 O ? A VAL 59 ? A VAL 138 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? O HOH . ? B HOH 41 ? 1_555 87.8 ? 5 O ? N HOH . ? A HOH 14 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? O HOH . ? B HOH 41 ? 1_555 102.4 ? 6 O ? N HOH . ? A HOH 17 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? O HOH . ? B HOH 41 ? 1_555 91.8 ? 7 O ? A VAL 59 ? A VAL 138 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? A SER 56 ? A SER 135 ? 1_555 85.9 ? 8 O ? N HOH . ? A HOH 14 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? A SER 56 ? A SER 135 ? 1_555 83.0 ? 9 O ? N HOH . ? A HOH 17 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? A SER 56 ? A SER 135 ? 1_555 132.5 ? 10 O ? O HOH . ? B HOH 41 ? 1_555 NA ? H NA . ? A NA 146 ? 1_555 O ? A SER 56 ? A SER 135 ? 1_555 135.3 ? 11 O ? A ASP 21 ? A ASP 100 ? 1_555 NA ? I NA . ? A NA 147 ? 1_555 O ? N HOH . ? A HOH 40 ? 1_555 90.4 ? 12 O ? A ASP 21 ? A ASP 100 ? 1_555 NA ? I NA . ? A NA 147 ? 1_555 O ? A THR 18 ? A THR 97 ? 1_555 90.4 ? 13 O ? N HOH . ? A HOH 40 ? 1_555 NA ? I NA . ? A NA 147 ? 1_555 O ? A THR 18 ? A THR 97 ? 1_555 127.3 ? 14 O ? A ASP 21 ? A ASP 100 ? 1_555 NA ? I NA . ? A NA 147 ? 1_555 O ? N HOH . ? A HOH 21 ? 1_555 98.9 ? 15 O ? N HOH . ? A HOH 40 ? 1_555 NA ? I NA . ? A NA 147 ? 1_555 O ? N HOH . ? A HOH 21 ? 1_555 79.3 ? 16 O ? A THR 18 ? A THR 97 ? 1_555 NA ? I NA . ? A NA 147 ? 1_555 O ? N HOH . ? A HOH 21 ? 1_555 151.9 ? 17 O ? O HOH . ? B HOH 44 ? 1_555 NA ? M NA . ? B NA 2 ? 1_555 O ? B SER 56 ? B SER 135 ? 1_555 137.5 ? 18 O ? O HOH . ? B HOH 44 ? 1_555 NA ? M NA . ? B NA 2 ? 1_555 O ? O HOH . ? B HOH 5 ? 1_555 104.1 ? 19 O ? B SER 56 ? B SER 135 ? 1_555 NA ? M NA . ? B NA 2 ? 1_555 O ? O HOH . ? B HOH 5 ? 1_555 114.6 ? 20 O ? O HOH . ? B HOH 44 ? 1_555 NA ? M NA . ? B NA 2 ? 1_555 O ? B VAL 59 ? B VAL 138 ? 1_555 82.4 ? 21 O ? B SER 56 ? B SER 135 ? 1_555 NA ? M NA . ? B NA 2 ? 1_555 O ? B VAL 59 ? B VAL 138 ? 1_555 90.4 ? 22 O ? O HOH . ? B HOH 5 ? 1_555 NA ? M NA . ? B NA 2 ? 1_555 O ? B VAL 59 ? B VAL 138 ? 1_555 75.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-25 2 'Structure model' 1 1 2013-01-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -7.6560 -0.4100 -10.4940 0.0148 0.0245 0.0284 0.0120 -0.0027 -0.0156 2.8237 1.5698 3.7608 -0.6960 0.2198 -0.4340 -0.0025 0.0271 -0.0247 0.0857 0.0476 -0.0215 0.0151 0.0178 0.1312 'X-RAY DIFFRACTION' 2 ? refined -22.8320 15.5020 -9.7950 0.0451 0.0207 0.0285 0.0169 -0.0076 0.0047 2.2479 2.0904 3.3265 -1.4578 -0.1825 0.5776 -0.0664 -0.0552 0.1217 -0.0052 0.0465 0.1065 -0.0101 -0.2014 0.0214 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 85 A 141 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 83 B 142 ? . . . . ? # _pdbx_phasing_MR.entry_id 3UA6 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.020 _pdbx_phasing_MR.d_res_low_rotation 42.000 _pdbx_phasing_MR.d_res_high_translation 2.020 _pdbx_phasing_MR.d_res_low_translation 42.000 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SAINT . ? package ? ? 'data scaling' http://www.bruker-axs.de/ ? ? 2 SCALA . ? other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 APEX . ? ? ? ? 'data collection' ? ? ? 7 SAINT . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 114 ? ? -110.26 65.92 2 1 SER B 115 ? ? -107.53 -96.56 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 80 ? A MET 1 2 1 Y 1 A GLY 81 ? A GLY 2 3 1 Y 1 A THR 82 ? A THR 3 4 1 Y 1 A GLY 83 ? A GLY 4 5 1 Y 1 A VAL 84 ? A VAL 5 6 1 Y 1 A ASP 142 ? A ASP 63 7 1 Y 1 A SER 143 ? A SER 64 8 1 Y 1 B MET 80 ? B MET 1 9 1 Y 1 B GLY 81 ? B GLY 2 10 1 Y 1 B THR 82 ? B THR 3 11 1 Y 1 B SER 143 ? B SER 64 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'FORMIC ACID' FMT 4 'SODIUM ION' NA 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 1 1 GOL GOL A . D 2 GOL 1 2 2 GOL GOL A . E 3 FMT 1 144 1 FMT FMT A . F 3 FMT 1 145 2 FMT FMT A . G 3 FMT 1 3 3 FMT FMT A . H 4 NA 1 146 1 NA NA A . I 4 NA 1 147 3 NA NA A . J 3 FMT 1 148 1 FMT FMT A . K 3 FMT 1 149 1 FMT FMT A . L 3 FMT 1 4 4 FMT FMT B . M 4 NA 1 2 2 NA NA B . N 5 HOH 1 4 4 HOH HOH A . N 5 HOH 2 7 7 HOH HOH A . N 5 HOH 3 8 8 HOH HOH A . N 5 HOH 4 11 11 HOH HOH A . N 5 HOH 5 12 12 HOH HOH A . N 5 HOH 6 13 13 HOH HOH A . N 5 HOH 7 14 14 HOH HOH A . N 5 HOH 8 17 17 HOH HOH A . N 5 HOH 9 19 19 HOH HOH A . N 5 HOH 10 21 21 HOH HOH A . N 5 HOH 11 22 22 HOH HOH A . N 5 HOH 12 23 23 HOH HOH A . N 5 HOH 13 24 24 HOH HOH A . N 5 HOH 14 25 25 HOH HOH A . N 5 HOH 15 26 26 HOH HOH A . N 5 HOH 16 30 30 HOH HOH A . N 5 HOH 17 31 31 HOH HOH A . N 5 HOH 18 33 33 HOH HOH A . N 5 HOH 19 35 35 HOH HOH A . N 5 HOH 20 37 37 HOH HOH A . N 5 HOH 21 38 38 HOH HOH A . N 5 HOH 22 40 40 HOH HOH A . N 5 HOH 23 42 42 HOH HOH A . N 5 HOH 24 43 43 HOH HOH A . N 5 HOH 25 45 45 HOH HOH A . N 5 HOH 26 47 47 HOH HOH A . N 5 HOH 27 49 49 HOH HOH A . N 5 HOH 28 51 51 HOH HOH A . N 5 HOH 29 52 52 HOH HOH A . N 5 HOH 30 60 60 HOH HOH A . N 5 HOH 31 62 62 HOH HOH A . N 5 HOH 32 63 63 HOH HOH A . N 5 HOH 33 64 64 HOH HOH A . N 5 HOH 34 65 65 HOH HOH A . N 5 HOH 35 69 69 HOH HOH A . N 5 HOH 36 70 70 HOH HOH A . N 5 HOH 37 71 71 HOH HOH A . N 5 HOH 38 72 72 HOH HOH A . N 5 HOH 39 73 73 HOH HOH A . N 5 HOH 40 74 74 HOH HOH A . N 5 HOH 41 75 75 HOH HOH A . N 5 HOH 42 150 1 HOH HOH A . N 5 HOH 43 151 2 HOH HOH A . N 5 HOH 44 152 3 HOH HOH A . O 5 HOH 1 5 5 HOH HOH B . O 5 HOH 2 6 6 HOH HOH B . O 5 HOH 3 9 9 HOH HOH B . O 5 HOH 4 10 10 HOH HOH B . O 5 HOH 5 15 15 HOH HOH B . O 5 HOH 6 16 16 HOH HOH B . O 5 HOH 7 18 18 HOH HOH B . O 5 HOH 8 20 20 HOH HOH B . O 5 HOH 9 27 27 HOH HOH B . O 5 HOH 10 28 28 HOH HOH B . O 5 HOH 11 29 29 HOH HOH B . O 5 HOH 12 32 32 HOH HOH B . O 5 HOH 13 34 34 HOH HOH B . O 5 HOH 14 36 36 HOH HOH B . O 5 HOH 15 39 39 HOH HOH B . O 5 HOH 16 41 41 HOH HOH B . O 5 HOH 17 44 44 HOH HOH B . O 5 HOH 18 46 46 HOH HOH B . O 5 HOH 19 48 48 HOH HOH B . O 5 HOH 20 50 50 HOH HOH B . O 5 HOH 21 53 53 HOH HOH B . O 5 HOH 22 54 54 HOH HOH B . O 5 HOH 23 55 55 HOH HOH B . O 5 HOH 24 56 56 HOH HOH B . O 5 HOH 25 57 57 HOH HOH B . O 5 HOH 26 58 58 HOH HOH B . O 5 HOH 27 59 59 HOH HOH B . O 5 HOH 28 61 61 HOH HOH B . O 5 HOH 29 66 66 HOH HOH B . O 5 HOH 30 67 67 HOH HOH B . O 5 HOH 31 68 68 HOH HOH B . #