HEADER TRANSFERASE 21-OCT-11 3UAN TITLE CRYSTAL STRUCTURE OF 3-O-SULFOTRANSFERASE (3-OST-1) WITH BOUND PAP AND TITLE 2 HEPTASACCHARIDE SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARAN SULFATE GLUCOSAMINE 3-O-SULFOTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: 3-O-SULFOTRANSFERASE ISOFORM 1; COMPND 5 SYNONYM: HEPARAN SULFATE D-GLUCOSAMINYL 3-O-SULFOTRANSFERASE 1, COMPND 6 HEPARAN SULFATE 3-O-SULFOTRANSFERASE 1; COMPND 7 EC: 2.8.2.23; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: HS3ST1, 3OST, 3OST1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS SULFOTRANSFERASE, HEPARAN SULFATE, ALPHA/BETA MOTIF, CO-FACTOR KEYWDS 2 PAPS/PAP, HEPARAN SULFATE OLIGOSACCHARIDES, GOLGI-LOCALIZED, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.F.MOON,Y.XU,S.M.WOODY,J.M.KRAHN,R.J.LINHARDT,J.LIU,L.C.PEDERSEN REVDAT 5 13-SEP-23 3UAN 1 HETSYN REVDAT 4 29-JUL-20 3UAN 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 25-APR-12 3UAN 1 JRNL REVDAT 2 18-APR-12 3UAN 1 JRNL REVDAT 1 04-APR-12 3UAN 0 JRNL AUTH A.F.MOON,Y.XU,S.M.WOODY,J.M.KRAHN,R.J.LINHARDT,J.LIU, JRNL AUTH 2 L.C.PEDERSEN JRNL TITL DISSECTING THE SUBSTRATE RECOGNITION OF 3-O-SULFOTRANSFERASE JRNL TITL 2 FOR THE BIOSYNTHESIS OF ANTICOAGULANT HEPARIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 5265 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22431632 JRNL DOI 10.1073/PNAS.1117923109 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 44993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5721 - 4.6368 0.98 2904 155 0.1739 0.2095 REMARK 3 2 4.6368 - 3.6843 0.99 2869 147 0.1355 0.1672 REMARK 3 3 3.6843 - 3.2198 0.99 2843 147 0.1696 0.1672 REMARK 3 4 3.2198 - 2.9259 0.98 2817 156 0.1867 0.2216 REMARK 3 5 2.9259 - 2.7165 0.98 2823 140 0.1987 0.2130 REMARK 3 6 2.7165 - 2.5565 0.98 2784 154 0.1940 0.2250 REMARK 3 7 2.5565 - 2.4286 0.97 2805 137 0.1825 0.2012 REMARK 3 8 2.4286 - 2.3229 0.97 2752 139 0.1745 0.2035 REMARK 3 9 2.3229 - 2.2336 0.96 2768 154 0.1690 0.2153 REMARK 3 10 2.2336 - 2.1565 0.95 2703 145 0.1789 0.2328 REMARK 3 11 2.1565 - 2.0892 0.95 2720 143 0.1796 0.2098 REMARK 3 12 2.0892 - 2.0295 0.93 2628 140 0.1891 0.2300 REMARK 3 13 2.0295 - 1.9761 0.90 2574 135 0.1940 0.2362 REMARK 3 14 1.9761 - 1.9279 0.89 2547 129 0.1967 0.2344 REMARK 3 15 1.9279 - 1.8841 0.83 2354 121 0.2137 0.2298 REMARK 3 16 1.8841 - 1.8440 0.65 1855 105 0.2460 0.2641 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 59.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.53160 REMARK 3 B22 (A**2) : 0.14570 REMARK 3 B33 (A**2) : -5.67730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.95670 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4563 REMARK 3 ANGLE : 0.838 6263 REMARK 3 CHIRALITY : 0.056 692 REMARK 3 PLANARITY : 0.004 767 REMARK 3 DIHEDRAL : 11.970 1578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:151 OR RESID 200:245) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6495 1.9825 34.0161 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.1378 REMARK 3 T33: 0.1600 T12: -0.0062 REMARK 3 T13: -0.0122 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.8794 L22: 0.9621 REMARK 3 L33: 2.5221 L12: -0.0862 REMARK 3 L13: -0.4670 L23: -0.1978 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.1236 S13: -0.0854 REMARK 3 S21: 0.0664 S22: -0.0433 S23: -0.1145 REMARK 3 S31: 0.0937 S32: -0.1915 S33: 0.0467 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 152:199 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8276 5.9993 55.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.2459 REMARK 3 T33: 0.1924 T12: -0.0439 REMARK 3 T13: 0.0669 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.2876 L22: 0.3804 REMARK 3 L33: 0.0465 L12: 0.0675 REMARK 3 L13: -0.1738 L23: 0.0853 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.1166 S13: 0.0225 REMARK 3 S21: 0.2937 S22: -0.1178 S23: 0.0447 REMARK 3 S31: 0.1238 S32: -0.0640 S33: 0.0328 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 246:275 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7835 0.0892 49.8617 REMARK 3 T TENSOR REMARK 3 T11: 0.3259 T22: 0.3672 REMARK 3 T33: 0.3108 T12: 0.0645 REMARK 3 T13: -0.1281 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.7899 L22: 0.3857 REMARK 3 L33: 0.0959 L12: -0.4204 REMARK 3 L13: 0.1300 L23: -0.0764 REMARK 3 S TENSOR REMARK 3 S11: -0.1557 S12: -0.3317 S13: 0.1315 REMARK 3 S21: 0.2963 S22: 0.1856 S23: -0.2275 REMARK 3 S31: 0.1171 S32: 0.4173 S33: 0.0547 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 276:999 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8219 -8.1321 51.2802 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.2395 REMARK 3 T33: 0.2537 T12: -0.1049 REMARK 3 T13: 0.1280 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.2961 L22: 0.3836 REMARK 3 L33: 0.1671 L12: 0.2876 REMARK 3 L13: -0.0972 L23: -0.1161 REMARK 3 S TENSOR REMARK 3 S11: -0.3125 S12: -0.3427 S13: -0.2791 REMARK 3 S21: 0.1525 S22: 0.0379 S23: -0.0260 REMARK 3 S31: 0.4041 S32: -0.0515 S33: 0.0856 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 11.2800 12.0876 47.8918 REMARK 3 T TENSOR REMARK 3 T11: 0.4185 T22: 0.2891 REMARK 3 T33: 0.2821 T12: 0.0369 REMARK 3 T13: -0.0505 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.8025 L22: 2.2689 REMARK 3 L33: 1.9068 L12: -0.7659 REMARK 3 L13: 0.4323 L23: 0.2259 REMARK 3 S TENSOR REMARK 3 S11: -0.3050 S12: -0.4181 S13: 0.2937 REMARK 3 S21: 0.2831 S22: 0.1754 S23: -0.2708 REMARK 3 S31: -0.4210 S32: -0.2985 S33: 0.0883 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 1:151 OR RESID 200:245) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7344 24.2440 9.3177 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1650 REMARK 3 T33: 0.1958 T12: 0.0171 REMARK 3 T13: 0.0015 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.7826 L22: 0.8140 REMARK 3 L33: 2.1317 L12: -0.7192 REMARK 3 L13: 0.4725 L23: -0.3216 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.0878 S13: 0.1755 REMARK 3 S21: 0.1210 S22: 0.0907 S23: -0.0952 REMARK 3 S31: -0.2073 S32: -0.0177 S33: -0.0319 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 152:199 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1313 17.1392 -13.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.3128 REMARK 3 T33: 0.1811 T12: 0.0690 REMARK 3 T13: 0.0219 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2063 L22: 0.1870 REMARK 3 L33: 0.2404 L12: -0.0935 REMARK 3 L13: -0.1391 L23: -0.0111 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: 0.0846 S13: -0.0076 REMARK 3 S21: 0.0610 S22: 0.0846 S23: 0.0031 REMARK 3 S31: 0.0791 S32: 0.0945 S33: -0.0139 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 246:275 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3172 37.1795 -4.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.5845 T22: 0.3714 REMARK 3 T33: 0.6175 T12: -0.2160 REMARK 3 T13: 0.1460 T23: 0.1920 REMARK 3 L TENSOR REMARK 3 L11: 0.1091 L22: 0.0892 REMARK 3 L33: 0.0535 L12: 0.0470 REMARK 3 L13: 0.0130 L23: 0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: 0.2900 S13: 0.1823 REMARK 3 S21: -0.2887 S22: 0.0578 S23: -0.2483 REMARK 3 S31: -0.1629 S32: 0.4657 S33: 0.0120 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESID 276:999 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9689 28.0164 -7.5815 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.3885 REMARK 3 T33: 0.2543 T12: 0.1155 REMARK 3 T13: 0.0025 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 0.8026 L22: 0.5610 REMARK 3 L33: 0.5342 L12: 0.1902 REMARK 3 L13: 0.6771 L23: -0.1374 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.3440 S13: 0.2177 REMARK 3 S21: -0.1714 S22: -0.0273 S23: 0.1372 REMARK 3 S31: -0.1658 S32: -0.0025 S33: 0.0179 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 17.2682 16.8015 -4.8823 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.4108 REMARK 3 T33: 0.3956 T12: 0.0673 REMARK 3 T13: 0.0867 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.0629 L22: 0.5504 REMARK 3 L33: 0.3445 L12: 0.1064 REMARK 3 L13: 0.1473 L23: 0.0710 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: 0.0813 S13: 0.2202 REMARK 3 S21: -0.2313 S22: -0.1502 S23: -0.3267 REMARK 3 S31: 0.0421 S32: 0.1955 S33: 0.0525 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44993 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.844 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31400 REMARK 200 FOR SHELL : 3.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP SUITE REMARK 200 STARTING MODEL: PDB ENTRY 1ZRH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF THE 3-OST REMARK 280 -1/PAP/HEPTASACCHARIDE COMPLEX WERE OBTAINED USING MICRO-BATCH REMARK 280 TECHNIQUE, BY MIXING 1.5 ML OF THE COMPLEX (12.9 MG/ML 3-OST-1, REMARK 280 5 MM HEPTASACCHARIDE, 4 MM PAP, 23.6 MM TRIS PH 7.5, 142 MM NACL) REMARK 280 WAS MIXED WITH 2.5 ML OF 0.1 M SODIUM CITRATE PH 5.5 AND 20% REMARK 280 PEG 3000. CRYSTALS GREW TO A USABLE SIZE AFTER 10 DAYS REMARK 280 INCUBATION AT ROOM TEMPERATURE. THE CRYSTALS WERE TRANSFERRED IN REMARK 280 TWO STEPS TO A CRYOPROTECTANT SOLUTION CONTAINING 0.1 M SODIUM REMARK 280 CITRATE PH 5.5, 0.1 M NACL, 4 MM PAP, 20 MM HEPTASACCHARIDE, 30% REMARK 280 PEG3000, AND 7.6% ETHYLENE GLYCOL. , TEMPERATURE 293K, MICROBATCH REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.08400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 PRO A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 GLY A 48 REMARK 465 THR A 49 REMARK 465 ALA A 50 REMARK 465 SER A 51 REMARK 465 ASN A 52 REMARK 465 GLY A 53 REMARK 465 ASP A 185 REMARK 465 GLY A 186 REMARK 465 GLY B 43 REMARK 465 SER B 44 REMARK 465 PRO B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 GLY B 48 REMARK 465 THR B 49 REMARK 465 ALA B 50 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 GLY B 53 REMARK 465 SER B 54 REMARK 465 ASP B 185 REMARK 465 GLY B 186 REMARK 465 GLN B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 HIS A 117 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 145 CZ NH1 NH2 REMARK 470 GLU A 155 OE1 OE2 REMARK 470 MET A 183 SD CE REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 191 CG OD1 OD2 REMARK 470 LYS A 193 CD CE NZ REMARK 470 ARG A 209 CZ NH1 NH2 REMARK 470 ARG A 223 NH1 NH2 REMARK 470 ARG A 237 CD NE CZ NH1 NH2 REMARK 470 LYS A 240 NZ REMARK 470 LYS A 254 CD CE NZ REMARK 470 ASP A 263 CG OD1 OD2 REMARK 470 SER A 264 OG REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 GLU A 272 CD OE1 OE2 REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 LYS A 284 CD CE NZ REMARK 470 LYS A 288 CD CE NZ REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLU A 295 CD OE1 OE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 LYS A 299 NZ REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 GLN B 57 CD OE1 NE2 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 SER B 115 OG REMARK 470 HIS B 117 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 171 CD CE NZ REMARK 470 LYS B 173 CE NZ REMARK 470 ARG B 184 O CG CD NE CZ NH1 NH2 REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 193 CD CE NZ REMARK 470 ARG B 209 CZ NH1 NH2 REMARK 470 ARG B 226 NE CZ NH1 NH2 REMARK 470 ARG B 237 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 240 CE NZ REMARK 470 LYS B 254 CE NZ REMARK 470 THR B 255 OG1 CG2 REMARK 470 ARG B 262 CG CD NE CZ NH1 NH2 REMARK 470 SER B 264 OG REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 PRO B 279 O REMARK 470 LEU B 285 CD1 CD2 REMARK 470 LYS B 288 CE NZ REMARK 470 GLU B 291 CD OE1 OE2 REMARK 470 LYS B 302 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 98.84 -160.46 REMARK 500 ASP A 227 82.69 -160.58 REMARK 500 ASP A 282 116.48 -36.16 REMARK 500 ASN B 89 149.93 81.73 REMARK 500 PRO B 116 -70.73 -43.81 REMARK 500 ASN B 141 93.78 -164.79 REMARK 500 HIS B 271 155.92 -49.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BDP C 1 REMARK 610 BDP B 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZRH RELATED DB: PDB REMARK 900 3-OST-1 WITH BOUND PAP REMARK 900 RELATED ID: 1T8T RELATED DB: PDB REMARK 900 3-OST-3A WITH BOUND PAP REMARK 900 RELATED ID: 1T8U RELATED DB: PDB REMARK 900 3-OST-3A WITH BOUND TETRASACCHARIDE SUBSTRATE AND PAP DBREF 3UAN A 48 311 UNP O35310 HS3S1_MOUSE 48 311 DBREF 3UAN B 48 311 UNP O35310 HS3S1_MOUSE 48 311 SEQADV 3UAN GLY A 43 UNP O35310 EXPRESSION TAG SEQADV 3UAN SER A 44 UNP O35310 EXPRESSION TAG SEQADV 3UAN PRO A 45 UNP O35310 EXPRESSION TAG SEQADV 3UAN ASN A 46 UNP O35310 EXPRESSION TAG SEQADV 3UAN SER A 47 UNP O35310 EXPRESSION TAG SEQADV 3UAN GLY B 43 UNP O35310 EXPRESSION TAG SEQADV 3UAN SER B 44 UNP O35310 EXPRESSION TAG SEQADV 3UAN PRO B 45 UNP O35310 EXPRESSION TAG SEQADV 3UAN ASN B 46 UNP O35310 EXPRESSION TAG SEQADV 3UAN SER B 47 UNP O35310 EXPRESSION TAG SEQRES 1 A 269 GLY SER PRO ASN SER GLY THR ALA SER ASN GLY SER THR SEQRES 2 A 269 GLN GLN LEU PRO GLN THR ILE ILE ILE GLY VAL ARG LYS SEQRES 3 A 269 GLY GLY THR ARG ALA LEU LEU GLU MET LEU SER LEU HIS SEQRES 4 A 269 PRO ASP VAL ALA ALA ALA GLU ASN GLU VAL HIS PHE PHE SEQRES 5 A 269 ASP TRP GLU GLU HIS TYR SER GLN GLY LEU GLY TRP TYR SEQRES 6 A 269 LEU THR GLN MET PRO PHE SER SER PRO HIS GLN LEU THR SEQRES 7 A 269 VAL GLU LYS THR PRO ALA TYR PHE THR SER PRO LYS VAL SEQRES 8 A 269 PRO GLU ARG ILE HIS SER MET ASN PRO THR ILE ARG LEU SEQRES 9 A 269 LEU LEU ILE LEU ARG ASP PRO SER GLU ARG VAL LEU SER SEQRES 10 A 269 ASP TYR THR GLN VAL LEU TYR ASN HIS LEU GLN LYS HIS SEQRES 11 A 269 LYS PRO TYR PRO PRO ILE GLU ASP LEU LEU MET ARG ASP SEQRES 12 A 269 GLY ARG LEU ASN LEU ASP TYR LYS ALA LEU ASN ARG SER SEQRES 13 A 269 LEU TYR HIS ALA HIS MET LEU ASN TRP LEU ARG PHE PHE SEQRES 14 A 269 PRO LEU GLY HIS ILE HIS ILE VAL ASP GLY ASP ARG LEU SEQRES 15 A 269 ILE ARG ASP PRO PHE PRO GLU ILE GLN LYS VAL GLU ARG SEQRES 16 A 269 PHE LEU LYS LEU SER PRO GLN ILE ASN ALA SER ASN PHE SEQRES 17 A 269 TYR PHE ASN LYS THR LYS GLY PHE TYR CYS LEU ARG ASP SEQRES 18 A 269 SER GLY LYS ASP ARG CYS LEU HIS GLU SER LYS GLY ARG SEQRES 19 A 269 ALA HIS PRO GLN VAL ASP PRO LYS LEU LEU ASP LYS LEU SEQRES 20 A 269 HIS GLU TYR PHE HIS GLU PRO ASN LYS LYS PHE PHE LYS SEQRES 21 A 269 LEU VAL GLY ARG THR PHE ASP TRP HIS SEQRES 1 B 269 GLY SER PRO ASN SER GLY THR ALA SER ASN GLY SER THR SEQRES 2 B 269 GLN GLN LEU PRO GLN THR ILE ILE ILE GLY VAL ARG LYS SEQRES 3 B 269 GLY GLY THR ARG ALA LEU LEU GLU MET LEU SER LEU HIS SEQRES 4 B 269 PRO ASP VAL ALA ALA ALA GLU ASN GLU VAL HIS PHE PHE SEQRES 5 B 269 ASP TRP GLU GLU HIS TYR SER GLN GLY LEU GLY TRP TYR SEQRES 6 B 269 LEU THR GLN MET PRO PHE SER SER PRO HIS GLN LEU THR SEQRES 7 B 269 VAL GLU LYS THR PRO ALA TYR PHE THR SER PRO LYS VAL SEQRES 8 B 269 PRO GLU ARG ILE HIS SER MET ASN PRO THR ILE ARG LEU SEQRES 9 B 269 LEU LEU ILE LEU ARG ASP PRO SER GLU ARG VAL LEU SER SEQRES 10 B 269 ASP TYR THR GLN VAL LEU TYR ASN HIS LEU GLN LYS HIS SEQRES 11 B 269 LYS PRO TYR PRO PRO ILE GLU ASP LEU LEU MET ARG ASP SEQRES 12 B 269 GLY ARG LEU ASN LEU ASP TYR LYS ALA LEU ASN ARG SER SEQRES 13 B 269 LEU TYR HIS ALA HIS MET LEU ASN TRP LEU ARG PHE PHE SEQRES 14 B 269 PRO LEU GLY HIS ILE HIS ILE VAL ASP GLY ASP ARG LEU SEQRES 15 B 269 ILE ARG ASP PRO PHE PRO GLU ILE GLN LYS VAL GLU ARG SEQRES 16 B 269 PHE LEU LYS LEU SER PRO GLN ILE ASN ALA SER ASN PHE SEQRES 17 B 269 TYR PHE ASN LYS THR LYS GLY PHE TYR CYS LEU ARG ASP SEQRES 18 B 269 SER GLY LYS ASP ARG CYS LEU HIS GLU SER LYS GLY ARG SEQRES 19 B 269 ALA HIS PRO GLN VAL ASP PRO LYS LEU LEU ASP LYS LEU SEQRES 20 B 269 HIS GLU TYR PHE HIS GLU PRO ASN LYS LYS PHE PHE LYS SEQRES 21 B 269 LEU VAL GLY ARG THR PHE ASP TRP HIS HET BDP C 1 12 HET SGN C 2 19 HET IDS C 3 16 HET SGN C 4 19 HET BDP C 5 12 HET NGY C 6 18 HET SGN D 1 19 HET IDS D 2 16 HET SGN D 3 19 HET BDP D 4 12 HET NGY D 5 18 HET A3P A 603 27 HET A3P B 603 27 HET BDP B 6 2 HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM NGY 2-ACETAMIDO-2-DEOXY-6-O-SULFO-ALPHA-D-GLUCOPYRANOSE HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN NGY 2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-ALPHA-D- HETSYN 2 NGY GLUCOPYRANOSE; N-ACETYL-6-O-SULFO-ALPHA-D-GLUCOSAMINE; HETSYN 3 NGY 2-ACETAMIDO-2-DEOXY-6-O-SULFO-ALPHA-D-GLUCOSE; 2- HETSYN 4 NGY ACETAMIDO-2-DEOXY-6-O-SULFO-D-GLUCOSE; 2-ACETAMIDO-2- HETSYN 5 NGY DEOXY-6-O-SULFO-GLUCOSE FORMUL 3 BDP 4(C6 H10 O7) FORMUL 3 SGN 4(C6 H13 N O11 S2) FORMUL 3 IDS 2(C6 H10 O10 S) FORMUL 3 NGY 2(C8 H15 N O9 S) FORMUL 5 A3P 2(C10 H15 N5 O10 P2) FORMUL 8 HOH *266(H2 O) HELIX 1 1 GLY A 70 SER A 79 1 10 HELIX 2 2 TRP A 96 SER A 101 1 6 HELIX 3 3 GLY A 103 GLN A 110 1 8 HELIX 4 4 PRO A 125 PHE A 128 5 4 HELIX 5 5 LYS A 132 ASN A 141 1 10 HELIX 6 6 ASP A 152 LYS A 171 1 20 HELIX 7 7 PRO A 177 MET A 183 1 7 HELIX 8 8 TYR A 192 SER A 198 1 7 HELIX 9 9 LEU A 199 ARG A 209 1 11 HELIX 10 10 PRO A 212 GLY A 214 5 3 HELIX 11 11 GLY A 221 ASP A 227 1 7 HELIX 12 12 ASP A 227 LEU A 239 1 13 HELIX 13 13 ASN A 246 SER A 248 5 3 HELIX 14 14 ASP A 282 GLY A 305 1 24 HELIX 15 15 GLY B 70 SER B 79 1 10 HELIX 16 16 TRP B 96 SER B 101 1 6 HELIX 17 17 GLY B 103 GLN B 110 1 8 HELIX 18 18 PRO B 125 SER B 130 5 6 HELIX 19 19 LYS B 132 ASN B 141 1 10 HELIX 20 20 ASP B 152 LYS B 171 1 20 HELIX 21 21 PRO B 177 MET B 183 1 7 HELIX 22 22 TYR B 192 SER B 198 1 7 HELIX 23 23 LEU B 199 ARG B 209 1 11 HELIX 24 24 PRO B 212 GLY B 214 5 3 HELIX 25 25 GLY B 221 ASP B 227 1 7 HELIX 26 26 ASP B 227 LEU B 239 1 13 HELIX 27 27 ASN B 246 SER B 248 5 3 HELIX 28 28 ASP B 282 GLY B 305 1 24 SHEET 1 A 2 THR A 55 GLN A 56 0 SHEET 2 A 2 PHE A 113 SER A 114 -1 O SER A 114 N THR A 55 SHEET 1 B 5 VAL A 84 ALA A 86 0 SHEET 2 B 5 LEU A 119 LYS A 123 1 O LEU A 119 N ALA A 85 SHEET 3 B 5 THR A 61 ILE A 63 1 N ILE A 63 O GLU A 122 SHEET 4 B 5 ARG A 145 LEU A 150 1 O LEU A 147 N ILE A 62 SHEET 5 B 5 ILE A 216 ASP A 220 1 O VAL A 219 N LEU A 148 SHEET 1 C 3 PHE A 250 ASN A 253 0 SHEET 2 C 3 PHE A 258 ASP A 263 -1 O CYS A 260 N TYR A 251 SHEET 3 C 3 LYS A 266 ARG A 268 -1 O ARG A 268 N LEU A 261 SHEET 1 D 5 VAL B 84 ALA B 86 0 SHEET 2 D 5 LEU B 119 LYS B 123 1 O LEU B 119 N ALA B 85 SHEET 3 D 5 THR B 61 GLY B 65 1 N ILE B 63 O GLU B 122 SHEET 4 D 5 ARG B 145 LEU B 150 1 O ILE B 149 N GLY B 65 SHEET 5 D 5 ILE B 216 ASP B 220 1 O VAL B 219 N LEU B 148 SHEET 1 E 3 PHE B 250 ASN B 253 0 SHEET 2 E 3 PHE B 258 ASP B 263 -1 O CYS B 260 N TYR B 251 SHEET 3 E 3 LYS B 266 ARG B 268 -1 O ARG B 268 N LEU B 261 SSBOND 1 CYS A 260 CYS A 269 1555 1555 2.03 SSBOND 2 CYS B 260 CYS B 269 1555 1555 2.03 LINK O6A BDP B 6 C1 SGN D 1 1555 1555 1.44 LINK O4 BDP C 1 C1 SGN C 2 1555 1555 1.45 LINK O4 SGN C 2 C1 IDS C 3 1555 1555 1.45 LINK O4 IDS C 3 C1 SGN C 4 1555 1555 1.45 LINK O4 SGN C 4 C1 BDP C 5 1555 1555 1.44 LINK O4 BDP C 5 C1 NGY C 6 1555 1555 1.45 LINK O4 SGN D 1 C1 IDS D 2 1555 1555 1.45 LINK O4 IDS D 2 C1 SGN D 3 1555 1555 1.45 LINK O4 SGN D 3 C1 BDP D 4 1555 1555 1.44 LINK O4 BDP D 4 C1 NGY D 5 1555 1555 1.44 CISPEP 1 GLY A 65 VAL A 66 0 -1.04 CISPEP 2 GLY B 65 VAL B 66 0 -1.79 CRYST1 52.883 62.168 86.373 90.00 95.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018910 0.000000 0.001708 0.00000 SCALE2 0.000000 0.016085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011625 0.00000