HEADER TRANSFERASE 22-OCT-11 3UAZ TITLE CRYSTAL STRUCTURE OF BACILLUS CEREUS ADENOSINE PHOSPHORYLASE D204N TITLE 2 MUTANT COMPLEXED WITH INOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE DEOD-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADENOSINE PHOSPHORYLASE; COMPND 5 SYNONYM: PNP; COMPND 6 EC: 2.4.2.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: DEOD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET5B KEYWDS NECLEOSIDE PHOSPHORYLASE I (NP-I) FAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.DESSANTI,Y.ZHANG,S.ALLEGRINI,M.G.TOZZI,F.SGARRELLA,S.E.EALICK REVDAT 4 13-SEP-23 3UAZ 1 REMARK SEQADV REVDAT 3 08-NOV-17 3UAZ 1 REMARK REVDAT 2 07-MAR-12 3UAZ 1 JRNL REVDAT 1 29-FEB-12 3UAZ 0 JRNL AUTH P.DESSANTI,Y.ZHANG,S.ALLEGRINI,M.G.TOZZI,F.SGARRELLA, JRNL AUTH 2 S.E.EALICK JRNL TITL STRUCTURAL BASIS OF THE SUBSTRATE SPECIFICITY OF BACILLUS JRNL TITL 2 CEREUS ADENOSINE PHOSPHORYLASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 239 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22349225 JRNL DOI 10.1107/S090744491200073X REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 57352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8137 - 3.7919 0.95 2927 163 0.1623 0.1703 REMARK 3 2 3.7919 - 3.0131 0.99 2905 152 0.1417 0.1532 REMARK 3 3 3.0131 - 2.6332 0.99 2875 134 0.1429 0.1416 REMARK 3 4 2.6332 - 2.3929 0.99 2828 145 0.1341 0.1463 REMARK 3 5 2.3929 - 2.2217 0.98 2787 159 0.1246 0.1408 REMARK 3 6 2.2217 - 2.0908 0.99 2808 131 0.1246 0.1707 REMARK 3 7 2.0908 - 1.9862 0.99 2801 131 0.1268 0.1699 REMARK 3 8 1.9862 - 1.8998 0.98 2777 138 0.1243 0.1204 REMARK 3 9 1.8998 - 1.8267 0.98 2763 138 0.1279 0.1523 REMARK 3 10 1.8267 - 1.7637 0.97 2741 133 0.1294 0.1409 REMARK 3 11 1.7637 - 1.7086 0.97 2679 157 0.1277 0.1333 REMARK 3 12 1.7086 - 1.6598 0.97 2720 135 0.1236 0.1407 REMARK 3 13 1.6598 - 1.6161 0.96 2673 148 0.1302 0.1380 REMARK 3 14 1.6161 - 1.5767 0.96 2672 140 0.1351 0.1649 REMARK 3 15 1.5767 - 1.5409 0.95 2670 132 0.1398 0.1428 REMARK 3 16 1.5409 - 1.5081 0.95 2623 142 0.1435 0.1698 REMARK 3 17 1.5081 - 1.4780 0.94 2603 142 0.1544 0.1599 REMARK 3 18 1.4780 - 1.4501 0.92 2575 142 0.1662 0.1684 REMARK 3 19 1.4501 - 1.4242 0.92 2566 138 0.1854 0.2191 REMARK 3 20 1.4242 - 1.4000 0.91 2526 133 0.1987 0.2247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.48 REMARK 3 B_SOL : 59.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52840 REMARK 3 B22 (A**2) : 0.52840 REMARK 3 B33 (A**2) : -1.05670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2128 REMARK 3 ANGLE : 1.316 2921 REMARK 3 CHIRALITY : 0.074 352 REMARK 3 PLANARITY : 0.006 375 REMARK 3 DIHEDRAL : 16.363 781 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:52) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9946 7.0328 57.6826 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1185 REMARK 3 T33: 0.1542 T12: -0.0202 REMARK 3 T13: 0.0063 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.2880 L22: 0.3873 REMARK 3 L33: 0.2486 L12: -0.1904 REMARK 3 L13: -0.0226 L23: 0.0238 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0670 S13: -0.1088 REMARK 3 S21: 0.0006 S22: 0.0437 S23: 0.1502 REMARK 3 S31: 0.0320 S32: -0.0935 S33: 0.0361 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 53:65) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5752 4.3391 57.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.0640 REMARK 3 T33: 0.0887 T12: -0.0115 REMARK 3 T13: 0.0197 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.1000 L22: 0.0240 REMARK 3 L33: 0.1045 L12: 0.0043 REMARK 3 L13: 0.0137 L23: 0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: -0.0704 S13: -0.0959 REMARK 3 S21: -0.1203 S22: 0.0012 S23: -0.0348 REMARK 3 S31: 0.1417 S32: -0.0264 S33: 0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 66:102) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2417 12.3177 52.0035 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0860 REMARK 3 T33: 0.0872 T12: -0.0041 REMARK 3 T13: 0.0058 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2334 L22: 0.6143 REMARK 3 L33: 0.1773 L12: -0.0380 REMARK 3 L13: 0.2133 L23: -0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.0007 S13: -0.0449 REMARK 3 S21: -0.0358 S22: 0.0165 S23: 0.0068 REMARK 3 S31: -0.0246 S32: 0.0116 S33: 0.0412 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 103:119) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3578 17.8843 50.3032 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.0871 REMARK 3 T33: 0.1015 T12: -0.0051 REMARK 3 T13: 0.0049 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.3006 L22: 0.0405 REMARK 3 L33: 0.0258 L12: -0.0722 REMARK 3 L13: 0.0321 L23: -0.0216 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.0065 S13: 0.0387 REMARK 3 S21: -0.0088 S22: -0.0321 S23: -0.0443 REMARK 3 S31: 0.0010 S32: -0.0246 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 120:144) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2197 7.7297 53.2373 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.0774 REMARK 3 T33: 0.1102 T12: 0.0034 REMARK 3 T13: 0.0026 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.3002 L22: 0.1551 REMARK 3 L33: 0.1295 L12: -0.0470 REMARK 3 L13: 0.0155 L23: -0.0604 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0374 S13: -0.0477 REMARK 3 S21: -0.0235 S22: 0.0759 S23: 0.0415 REMARK 3 S31: 0.0485 S32: 0.0451 S33: 0.0211 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 145:164) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8964 16.9925 40.7431 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.0907 REMARK 3 T33: 0.0892 T12: 0.0086 REMARK 3 T13: 0.0020 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.1711 L22: 0.1341 REMARK 3 L33: 0.3380 L12: -0.0373 REMARK 3 L13: 0.0040 L23: -0.2324 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: 0.0869 S13: -0.0117 REMARK 3 S21: -0.0928 S22: -0.0727 S23: -0.0681 REMARK 3 S31: 0.0840 S32: -0.0137 S33: 0.0108 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 165:181) REMARK 3 ORIGIN FOR THE GROUP (A): 56.0807 19.6029 39.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.1025 REMARK 3 T33: 0.0808 T12: 0.0205 REMARK 3 T13: 0.0017 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2138 L22: 0.0908 REMARK 3 L33: 0.0699 L12: -0.0103 REMARK 3 L13: 0.1169 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.1475 S13: -0.0291 REMARK 3 S21: -0.0132 S22: -0.0665 S23: 0.0055 REMARK 3 S31: -0.0376 S32: -0.0404 S33: -0.0331 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 182:214) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9138 12.5860 46.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1017 REMARK 3 T33: 0.0851 T12: -0.0099 REMARK 3 T13: -0.0118 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.4727 L22: 0.5566 REMARK 3 L33: 0.1459 L12: 0.3453 REMARK 3 L13: -0.0820 L23: -0.2246 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: 0.0941 S13: -0.0535 REMARK 3 S21: -0.1016 S22: 0.0829 S23: 0.0877 REMARK 3 S31: -0.0267 S32: 0.0591 S33: 0.0083 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 215:234) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1106 -0.2985 47.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.0495 REMARK 3 T33: 0.1160 T12: -0.0129 REMARK 3 T13: 0.0076 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4317 L22: 0.2482 REMARK 3 L33: 0.0698 L12: -0.0155 REMARK 3 L13: -0.0049 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.2588 S13: -0.3279 REMARK 3 S21: -0.2612 S22: -0.1163 S23: 0.1905 REMARK 3 S31: -0.0406 S32: 0.0441 S33: -0.0143 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ECP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 - 1.25 M SODIUM CITRATE, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -276.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 122.70000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 61.35000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 106.26132 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 61.35000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 106.26132 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 122.70000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 102.00000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 102.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 434 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CD CE NZ REMARK 470 ARG A 24 NE CZ NH1 NH2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 SER A 214 OG REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 183 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 43 18.85 56.92 REMARK 500 ARG A 101 -0.52 78.32 REMARK 500 GLU A 181 -26.49 -142.82 REMARK 500 ILE A 233 -83.43 -82.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NOS A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 239 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UAV RELATED DB: PDB REMARK 900 RELATED ID: 3UAW RELATED DB: PDB REMARK 900 RELATED ID: 3UAX RELATED DB: PDB REMARK 900 RELATED ID: 3UAY RELATED DB: PDB DBREF 3UAZ A 1 235 UNP Q5EEL8 DEOD_BACCE 1 235 SEQADV 3UAZ ASN A 204 UNP Q5EEL8 ASP 204 ENGINEERED MUTATION SEQRES 1 A 235 MET SER VAL HIS ILE GLU ALA LYS GLN GLY GLU ILE ALA SEQRES 2 A 235 GLU SER ILE LEU LEU PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 A 235 TYR ILE ALA GLU THR PHE LEU GLU ASP VAL THR CYS TYR SEQRES 4 A 235 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 A 235 LYS GLY LYS ARG VAL SER VAL GLN GLY THR GLY MET GLY SEQRES 6 A 235 VAL PRO SER ILE SER ILE TYR VAL ASN GLU LEU ILE GLN SEQRES 7 A 235 SER TYR GLY VAL LYS ASN LEU ILE ARG VAL GLY THR CYS SEQRES 8 A 235 GLY ALA ILE GLN LYS ASP VAL LYS VAL ARG ASP VAL ILE SEQRES 9 A 235 ILE ALA MET THR ALA CYS THR ASP SER ASN MET ASN ARG SEQRES 10 A 235 LEU THR PHE PRO GLY PHE ASP PHE ALA PRO ALA ALA ASN SEQRES 11 A 235 PHE ASP LEU LEU LYS LYS ALA TYR ASP ALA GLY THR GLU SEQRES 12 A 235 LYS GLY LEU HIS VAL ARG VAL GLY ASN VAL LEU THR ALA SEQRES 13 A 235 ASP VAL PHE TYR ARG GLU SER MET ASP MET VAL LYS LYS SEQRES 14 A 235 LEU GLY ASP TYR GLY VAL LEU ALA VAL GLU MET GLU THR SEQRES 15 A 235 THR ALA LEU TYR THR LEU ALA ALA LYS TYR GLY VAL ASN SEQRES 16 A 235 ALA LEU SER VAL LEU THR VAL SER ASN HIS ILE PHE THR SEQRES 17 A 235 GLY GLU GLU THR THR SER GLU GLU ARG GLN THR THR PHE SEQRES 18 A 235 ASN GLU MET ILE GLU ILE ALA LEU ASP ALA ALA ILE GLN SEQRES 19 A 235 GLN HET NOS A 236 19 HET SO4 A 237 5 HET GOL A 238 6 HET GOL A 239 6 HETNAM NOS INOSINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NOS C10 H12 N4 O5 FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *195(H2 O) HELIX 1 1 ASP A 21 LEU A 33 1 13 HELIX 2 2 ASN A 41 MET A 45 5 5 HELIX 3 3 GLY A 65 GLY A 81 1 17 HELIX 4 4 ASN A 114 PHE A 120 1 7 HELIX 5 5 ASN A 130 GLY A 145 1 16 HELIX 6 6 MET A 164 TYR A 173 1 10 HELIX 7 7 GLU A 181 GLY A 193 1 13 HELIX 8 8 THR A 213 GLN A 234 1 22 SHEET 1 A10 GLU A 34 ASN A 40 0 SHEET 2 A10 GLY A 47 TYR A 52 -1 O THR A 51 N GLU A 34 SHEET 3 A10 LYS A 55 GLN A 60 -1 O VAL A 59 N PHE A 48 SHEET 4 A10 SER A 15 LEU A 18 1 N LEU A 17 O GLN A 60 SHEET 5 A10 ASN A 84 ALA A 93 1 O ILE A 86 N ILE A 16 SHEET 6 A10 ASN A 195 HIS A 205 1 O ASN A 204 N ALA A 93 SHEET 7 A10 VAL A 103 THR A 111 -1 N ILE A 104 O LEU A 200 SHEET 8 A10 VAL A 148 THR A 155 1 O THR A 155 N CYS A 110 SHEET 9 A10 ALA A 177 GLU A 179 1 O GLU A 179 N LEU A 154 SHEET 10 A10 ASN A 84 ALA A 93 -1 N GLY A 92 O VAL A 178 SITE 1 AC1 17 HIS A 4 ARG A 43 ARG A 87 THR A 90 SITE 2 AC1 17 CYS A 91 GLY A 92 PHE A 159 VAL A 178 SITE 3 AC1 17 GLU A 179 MET A 180 GLU A 181 ASN A 204 SITE 4 AC1 17 ILE A 206 SO4 A 237 HOH A 262 HOH A 299 SITE 5 AC1 17 HOH A 336 SITE 1 AC2 8 GLY A 20 ARG A 43 ARG A 87 GLY A 89 SITE 2 AC2 8 THR A 90 NOS A 236 HOH A 263 HOH A 298 SITE 1 AC3 7 TYR A 160 ARG A 161 GLU A 162 TYR A 173 SITE 2 AC3 7 LYS A 191 HOH A 242 HOH A 364 SITE 1 AC4 5 GLU A 75 GLN A 78 SER A 79 TYR A 160 SITE 2 AC4 5 HOH A 248 CRYST1 122.700 122.700 68.000 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008150 0.004705 0.000000 0.00000 SCALE2 0.000000 0.009411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014706 0.00000