data_3UBU # _entry.id 3UBU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UBU RCSB RCSB068557 WWPDB D_1000068557 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UBU _pdbx_database_status.recvd_initial_deposition_date 2011-10-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.' 1 'Ge, H.' 2 'Chen, H.' 3 'Li, H.' 4 'Liu, Y.' 5 'Niu, L.' 6 'Teng, M.' 7 # _citation.id primary _citation.title 'Crystal structure of agkisacucetin, a Gpib-binding snake C-type lectin that inhibits platelet adhesion and aggregation.' _citation.journal_abbrev Proteins _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 1097-0134 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22447656 _citation.pdbx_database_id_DOI 10.1002/prot.24060 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gao, Y.' 1 primary 'Ge, H.' 2 primary 'Chen, H.' 3 primary 'Li, H.' 4 primary 'Liu, Y.' 5 primary 'Chen, L.' 6 primary 'Li, X.' 7 primary 'Liu, J.' 8 primary 'Niu, L.' 9 primary 'Teng, M.' 10 # _cell.entry_id 3UBU _cell.length_a 30.485 _cell.length_b 58.052 _cell.length_c 141.537 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UBU _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Agglucetin subunit alpha-1' 14948.614 1 ? ? ? ? 2 polymer nat 'Agglucetin subunit beta-2' 14834.967 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 5 water nat water 18.015 135 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Antithrombin 1 chain B' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DVDCLPGWSAYDQSCYRVFKLLKTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSENKQTDNVWLGLKIQSKGQQCS TEWTDGSSVSYENFSEYQSKKCFVLEKNTGFRTWLNLNCGSEYSFVCKSPP ; ;DVDCLPGWSAYDQSCYRVFKLLKTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSENKQTDNVWLGLKIQSKGQQCS TEWTDGSSVSYENFSEYQSKKCFVLEKNTGFRTWLNLNCGSEYSFVCKSPP ; A ? 2 'polypeptide(L)' no yes ;GF(OCS)CPLRWSAYEGHCYLVVKEKKTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILDLSLIWMGLSNMWND CKREWSDGTKLDFKSWAKTSDCLIGKTDGDNQWLNMDCSKKHYFVCKFKL ; ;GFCCPLRWSAYEGHCYLVVKEKKTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILDLSLIWMGLSNMWNDCKRE WSDGTKLDFKSWAKTSDCLIGKTDGDNQWLNMDCSKKHYFVCKFKL ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 VAL n 1 3 ASP n 1 4 CYS n 1 5 LEU n 1 6 PRO n 1 7 GLY n 1 8 TRP n 1 9 SER n 1 10 ALA n 1 11 TYR n 1 12 ASP n 1 13 GLN n 1 14 SER n 1 15 CYS n 1 16 TYR n 1 17 ARG n 1 18 VAL n 1 19 PHE n 1 20 LYS n 1 21 LEU n 1 22 LEU n 1 23 LYS n 1 24 THR n 1 25 TRP n 1 26 ASP n 1 27 ASP n 1 28 ALA n 1 29 GLU n 1 30 LYS n 1 31 PHE n 1 32 CYS n 1 33 THR n 1 34 GLU n 1 35 ARG n 1 36 PRO n 1 37 LYS n 1 38 GLY n 1 39 GLY n 1 40 HIS n 1 41 LEU n 1 42 VAL n 1 43 SER n 1 44 ILE n 1 45 GLU n 1 46 SER n 1 47 ALA n 1 48 GLY n 1 49 GLU n 1 50 ARG n 1 51 ASP n 1 52 PHE n 1 53 VAL n 1 54 ALA n 1 55 GLN n 1 56 LEU n 1 57 VAL n 1 58 SER n 1 59 GLU n 1 60 ASN n 1 61 LYS n 1 62 GLN n 1 63 THR n 1 64 ASP n 1 65 ASN n 1 66 VAL n 1 67 TRP n 1 68 LEU n 1 69 GLY n 1 70 LEU n 1 71 LYS n 1 72 ILE n 1 73 GLN n 1 74 SER n 1 75 LYS n 1 76 GLY n 1 77 GLN n 1 78 GLN n 1 79 CYS n 1 80 SER n 1 81 THR n 1 82 GLU n 1 83 TRP n 1 84 THR n 1 85 ASP n 1 86 GLY n 1 87 SER n 1 88 SER n 1 89 VAL n 1 90 SER n 1 91 TYR n 1 92 GLU n 1 93 ASN n 1 94 PHE n 1 95 SER n 1 96 GLU n 1 97 TYR n 1 98 GLN n 1 99 SER n 1 100 LYS n 1 101 LYS n 1 102 CYS n 1 103 PHE n 1 104 VAL n 1 105 LEU n 1 106 GLU n 1 107 LYS n 1 108 ASN n 1 109 THR n 1 110 GLY n 1 111 PHE n 1 112 ARG n 1 113 THR n 1 114 TRP n 1 115 LEU n 1 116 ASN n 1 117 LEU n 1 118 ASN n 1 119 CYS n 1 120 GLY n 1 121 SER n 1 122 GLU n 1 123 TYR n 1 124 SER n 1 125 PHE n 1 126 VAL n 1 127 CYS n 1 128 LYS n 1 129 SER n 1 130 PRO n 1 131 PRO n 2 1 GLY n 2 2 PHE n 2 3 OCS n 2 4 CYS n 2 5 PRO n 2 6 LEU n 2 7 ARG n 2 8 TRP n 2 9 SER n 2 10 ALA n 2 11 TYR n 2 12 GLU n 2 13 GLY n 2 14 HIS n 2 15 CYS n 2 16 TYR n 2 17 LEU n 2 18 VAL n 2 19 VAL n 2 20 LYS n 2 21 GLU n 2 22 LYS n 2 23 LYS n 2 24 THR n 2 25 TRP n 2 26 ASP n 2 27 ASP n 2 28 ALA n 2 29 GLU n 2 30 LYS n 2 31 PHE n 2 32 CYS n 2 33 THR n 2 34 GLU n 2 35 GLN n 2 36 ARG n 2 37 LYS n 2 38 GLY n 2 39 GLY n 2 40 HIS n 2 41 LEU n 2 42 VAL n 2 43 SER n 2 44 VAL n 2 45 HIS n 2 46 SER n 2 47 ARG n 2 48 GLU n 2 49 GLU n 2 50 ALA n 2 51 ASP n 2 52 PHE n 2 53 LEU n 2 54 VAL n 2 55 HIS n 2 56 LEU n 2 57 ALA n 2 58 TYR n 2 59 PRO n 2 60 ILE n 2 61 LEU n 2 62 ASP n 2 63 LEU n 2 64 SER n 2 65 LEU n 2 66 ILE n 2 67 TRP n 2 68 MET n 2 69 GLY n 2 70 LEU n 2 71 SER n 2 72 ASN n 2 73 MET n 2 74 TRP n 2 75 ASN n 2 76 ASP n 2 77 CYS n 2 78 LYS n 2 79 ARG n 2 80 GLU n 2 81 TRP n 2 82 SER n 2 83 ASP n 2 84 GLY n 2 85 THR n 2 86 LYS n 2 87 LEU n 2 88 ASP n 2 89 PHE n 2 90 LYS n 2 91 SER n 2 92 TRP n 2 93 ALA n 2 94 LYS n 2 95 THR n 2 96 SER n 2 97 ASP n 2 98 CYS n 2 99 LEU n 2 100 ILE n 2 101 GLY n 2 102 LYS n 2 103 THR n 2 104 ASP n 2 105 GLY n 2 106 ASP n 2 107 ASN n 2 108 GLN n 2 109 TRP n 2 110 LEU n 2 111 ASN n 2 112 MET n 2 113 ASP n 2 114 CYS n 2 115 SER n 2 116 LYS n 2 117 LYS n 2 118 HIS n 2 119 TYR n 2 120 PHE n 2 121 VAL n 2 122 CYS n 2 123 LYS n 2 124 PHE n 2 125 LYS n 2 126 LEU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? 'Hundred-pace snake' 'Deinagkistrodon acutus' 36307 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? 'Hundred-pace snake' 'Deinagkistrodon acutus' 36307 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP AGGA1_AGKAC Q8JIV9 1 ;DVDCLPGWSAYDQSCYRVFKLLKTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSENKQTDNVWLGLKIQSKGQQCS TEWTDGSSVSYENFSEYQSKKCFVLEKNTGFRTWLNLNCGSEYAFVCKSPP ; 24 ? 2 UNP AGGB2_AGKAC Q8AYA3 2 ;GFCCPLRWSSYEGHCYLVVKEKKTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILDLSLIWMGLSNMWNDCKRE WSDGTKLDFKAWAKTSDCLIGKTDGDNQWLNMDCSKKHYFVCKFKL ; 24 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UBU A 1 ? 131 ? Q8JIV9 24 ? 154 ? 1 131 2 2 3UBU B 1 ? 126 ? Q8AYA3 24 ? 149 ? 1 126 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UBU SER A 124 ? UNP Q8JIV9 ALA 147 CONFLICT 124 1 2 3UBU ALA B 10 ? UNP Q8AYA3 SER 33 CONFLICT 10 2 2 3UBU SER B 91 ? UNP Q8AYA3 ALA 114 'SEE REMARK 999' 91 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UBU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.50 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 287 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.28M ammonium sulfate, 17.6% PEG 8000, 0.2M lithium sulfate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 287K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2010-02-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791 # _reflns.entry_id 3UBU _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.91 _reflns.number_obs 18923 _reflns.number_all ? _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3UBU _refine.ls_number_reflns_obs 17895 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 1.91 _refine.ls_percent_reflns_obs 93.58 _refine.ls_R_factor_obs 0.19330 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19171 _refine.ls_R_factor_R_free 0.22239 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 974 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 41.609 _refine.aniso_B[1][1] -0.34 _refine.aniso_B[2][2] 2.84 _refine.aniso_B[3][3] -2.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.157 _refine.overall_SU_ML 0.129 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.297 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2081 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 2239 _refine_hist.d_res_high 1.91 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.013 0.022 ? 2162 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.355 1.936 ? 2921 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.669 5.000 ? 254 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.168 24.510 ? 102 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.540 15.000 ? 375 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 22.443 15.000 ? 8 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.095 0.200 ? 294 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 1623 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.732 1.500 ? 1269 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.290 2.000 ? 2036 ? 'X-RAY DIFFRACTION' r_scbond_it 2.027 3.000 ? 893 ? 'X-RAY DIFFRACTION' r_scangle_it 3.030 4.500 ? 885 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.915 _refine_ls_shell.d_res_low 1.965 _refine_ls_shell.number_reflns_R_work 1016 _refine_ls_shell.R_factor_R_work 0.378 _refine_ls_shell.percent_reflns_obs 75.00 _refine_ls_shell.R_factor_R_free 0.296 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3UBU _struct.title 'Crystal structure of agkisacucetin, a GpIb-binding snaclec (snake C-type lectin) that inhibits platelet' _struct.pdbx_descriptor 'Agglucetin subunit alpha-1, Agglucetin subunit beta-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UBU _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'platelet inhibiting, agkisacucetin, dimer, toxin, C-type lectin-like, GPIb inhibitor, GPIb Binding' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 24 ? GLU A 34 ? THR A 24 GLU A 34 1 ? 11 HELX_P HELX_P2 2 SER A 46 ? ASN A 60 ? SER A 46 ASN A 60 1 ? 15 HELX_P HELX_P3 3 LYS A 107 ? GLY A 110 ? LYS A 107 GLY A 110 5 ? 4 HELX_P HELX_P4 4 THR B 24 ? ARG B 36 ? THR B 24 ARG B 36 1 ? 13 HELX_P HELX_P5 5 SER B 46 ? ASP B 62 ? SER B 46 ASP B 62 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 15 SG ? ? A CYS 4 A CYS 15 1_555 ? ? ? ? ? ? ? 2.054 ? disulf2 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 32 A CYS 127 1_555 ? ? ? ? ? ? ? 2.034 ? disulf3 disulf ? ? A CYS 79 SG ? ? ? 1_555 B CYS 77 SG ? ? A CYS 79 B CYS 77 1_555 ? ? ? ? ? ? ? 2.029 ? disulf4 disulf ? ? A CYS 102 SG ? ? ? 1_555 A CYS 119 SG ? ? A CYS 102 A CYS 119 1_555 ? ? ? ? ? ? ? 2.018 ? disulf5 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 15 SG ? ? B CYS 4 B CYS 15 1_555 ? ? ? ? ? ? ? 2.059 ? disulf6 disulf ? ? B CYS 32 SG ? ? ? 1_555 B CYS 122 SG ? ? B CYS 32 B CYS 122 1_555 ? ? ? ? ? ? ? 2.081 ? disulf7 disulf ? ? B CYS 98 SG ? ? ? 1_555 B CYS 114 SG ? ? B CYS 98 B CYS 114 1_555 ? ? ? ? ? ? ? 2.033 ? covale1 covale ? ? B PHE 2 C ? ? ? 1_555 B OCS 3 N ? ? B PHE 2 B OCS 3 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? B OCS 3 C ? ? ? 1_555 B CYS 4 N ? ? B OCS 3 B CYS 4 1_555 ? ? ? ? ? ? ? 1.333 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 4 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 9 ? TYR A 11 ? SER A 9 TYR A 11 A 2 SER A 14 ? LYS A 23 ? SER A 14 LYS A 23 A 3 TYR A 123 ? SER A 129 ? TYR A 123 SER A 129 A 4 VAL A 66 ? GLN A 73 ? VAL A 66 GLN A 73 A 5 CYS A 102 ? LEU A 105 ? CYS A 102 LEU A 105 A 6 TRP A 114 ? LEU A 117 ? TRP A 114 LEU A 117 B 1 HIS A 40 ? LEU A 41 ? HIS A 40 LEU A 41 B 2 TYR A 123 ? SER A 129 ? TYR A 123 SER A 129 B 3 VAL A 66 ? GLN A 73 ? VAL A 66 GLN A 73 B 4 LYS B 78 ? TRP B 81 ? LYS B 78 TRP B 81 C 1 SER B 9 ? TYR B 11 ? SER B 9 TYR B 11 C 2 HIS B 14 ? LYS B 23 ? HIS B 14 LYS B 23 C 3 HIS B 118 ? LYS B 125 ? HIS B 118 LYS B 125 C 4 HIS B 40 ? LEU B 41 ? HIS B 40 LEU B 41 D 1 SER B 9 ? TYR B 11 ? SER B 9 TYR B 11 D 2 HIS B 14 ? LYS B 23 ? HIS B 14 LYS B 23 D 3 HIS B 118 ? LYS B 125 ? HIS B 118 LYS B 125 D 4 LEU B 65 ? SER B 71 ? LEU B 65 SER B 71 D 5 CYS B 98 ? LYS B 102 ? CYS B 98 LYS B 102 D 6 TRP B 109 ? MET B 112 ? TRP B 109 MET B 112 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 9 ? N SER A 9 O TYR A 16 ? O TYR A 16 A 2 3 N PHE A 19 ? N PHE A 19 O PHE A 125 ? O PHE A 125 A 3 4 O SER A 124 ? O SER A 124 N TRP A 67 ? N TRP A 67 A 4 5 N VAL A 66 ? N VAL A 66 O LEU A 105 ? O LEU A 105 A 5 6 N CYS A 102 ? N CYS A 102 O LEU A 117 ? O LEU A 117 B 1 2 N HIS A 40 ? N HIS A 40 O LYS A 128 ? O LYS A 128 B 2 3 O SER A 124 ? O SER A 124 N TRP A 67 ? N TRP A 67 B 3 4 N LYS A 71 ? N LYS A 71 O GLU B 80 ? O GLU B 80 C 1 2 N SER B 9 ? N SER B 9 O TYR B 16 ? O TYR B 16 C 2 3 N VAL B 19 ? N VAL B 19 O PHE B 120 ? O PHE B 120 C 3 4 O LYS B 123 ? O LYS B 123 N HIS B 40 ? N HIS B 40 D 1 2 N SER B 9 ? N SER B 9 O TYR B 16 ? O TYR B 16 D 2 3 N VAL B 19 ? N VAL B 19 O PHE B 120 ? O PHE B 120 D 3 4 O TYR B 119 ? O TYR B 119 N TRP B 67 ? N TRP B 67 D 4 5 N ILE B 66 ? N ILE B 66 O GLY B 101 ? O GLY B 101 D 5 6 N ILE B 100 ? N ILE B 100 O LEU B 110 ? O LEU B 110 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 132' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL B 127' AC3 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GOL B 128' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 129' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 58 ? SER A 58 . ? 1_555 ? 2 AC1 6 SER A 87 ? SER A 87 . ? 3_644 ? 3 AC1 6 SER A 88 ? SER A 88 . ? 3_644 ? 4 AC1 6 GLY A 110 ? GLY A 110 . ? 1_555 ? 5 AC1 6 ARG A 112 ? ARG A 112 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH A 142 . ? 1_555 ? 7 AC2 5 LYS B 22 ? LYS B 22 . ? 1_555 ? 8 AC2 5 SER B 64 ? SER B 64 . ? 1_555 ? 9 AC2 5 HIS B 118 ? HIS B 118 . ? 1_555 ? 10 AC2 5 TYR B 119 ? TYR B 119 . ? 1_555 ? 11 AC2 5 HOH H . ? HOH B 132 . ? 1_555 ? 12 AC3 9 GLN A 55 ? GLN A 55 . ? 3_654 ? 13 AC3 9 ARG A 112 ? ARG A 112 . ? 3_654 ? 14 AC3 9 GLU B 12 ? GLU B 12 . ? 1_555 ? 15 AC3 9 HIS B 14 ? HIS B 14 . ? 1_555 ? 16 AC3 9 HIS B 45 ? HIS B 45 . ? 1_555 ? 17 AC3 9 GLU B 49 ? GLU B 49 . ? 1_555 ? 18 AC3 9 LYS B 123 ? LYS B 123 . ? 1_555 ? 19 AC3 9 HOH H . ? HOH B 140 . ? 1_555 ? 20 AC3 9 HOH H . ? HOH B 184 . ? 1_555 ? 21 AC4 3 ASN B 75 ? ASN B 75 . ? 1_555 ? 22 AC4 3 TRP B 92 ? TRP B 92 . ? 1_555 ? 23 AC4 3 LYS B 102 ? LYS B 102 . ? 1_655 ? # _database_PDB_matrix.entry_id 3UBU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UBU _atom_sites.fract_transf_matrix[1][1] 0.032803 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017226 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007065 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 TRP 83 83 83 TRP TRP A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 CYS 102 102 102 CYS CYS A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 TRP 114 114 114 TRP TRP A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 CYS 119 119 119 CYS CYS A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 PRO 131 131 131 PRO PRO A . n B 2 1 GLY 1 1 1 GLY GLY B . n B 2 2 PHE 2 2 2 PHE PHE B . n B 2 3 OCS 3 3 3 OCS OCS B . n B 2 4 CYS 4 4 4 CYS CYS B . n B 2 5 PRO 5 5 5 PRO PRO B . n B 2 6 LEU 6 6 6 LEU LEU B . n B 2 7 ARG 7 7 7 ARG ARG B . n B 2 8 TRP 8 8 8 TRP TRP B . n B 2 9 SER 9 9 9 SER SER B . n B 2 10 ALA 10 10 10 ALA ALA B . n B 2 11 TYR 11 11 11 TYR TYR B . n B 2 12 GLU 12 12 12 GLU GLU B . n B 2 13 GLY 13 13 13 GLY GLY B . n B 2 14 HIS 14 14 14 HIS HIS B . n B 2 15 CYS 15 15 15 CYS CYS B . n B 2 16 TYR 16 16 16 TYR TYR B . n B 2 17 LEU 17 17 17 LEU LEU B . n B 2 18 VAL 18 18 18 VAL VAL B . n B 2 19 VAL 19 19 19 VAL VAL B . n B 2 20 LYS 20 20 20 LYS LYS B . n B 2 21 GLU 21 21 21 GLU GLU B . n B 2 22 LYS 22 22 22 LYS LYS B . n B 2 23 LYS 23 23 23 LYS LYS B . n B 2 24 THR 24 24 24 THR THR B . n B 2 25 TRP 25 25 25 TRP TRP B . n B 2 26 ASP 26 26 26 ASP ASP B . n B 2 27 ASP 27 27 27 ASP ASP B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 GLU 29 29 29 GLU GLU B . n B 2 30 LYS 30 30 30 LYS LYS B . n B 2 31 PHE 31 31 31 PHE PHE B . n B 2 32 CYS 32 32 32 CYS CYS B . n B 2 33 THR 33 33 33 THR THR B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLN 35 35 35 GLN GLN B . n B 2 36 ARG 36 36 36 ARG ARG B . n B 2 37 LYS 37 37 37 LYS LYS B . n B 2 38 GLY 38 38 38 GLY GLY B . n B 2 39 GLY 39 39 39 GLY GLY B . n B 2 40 HIS 40 40 40 HIS HIS B . n B 2 41 LEU 41 41 41 LEU LEU B . n B 2 42 VAL 42 42 42 VAL VAL B . n B 2 43 SER 43 43 43 SER SER B . n B 2 44 VAL 44 44 44 VAL VAL B . n B 2 45 HIS 45 45 45 HIS HIS B . n B 2 46 SER 46 46 46 SER SER B . n B 2 47 ARG 47 47 47 ARG ARG B . n B 2 48 GLU 48 48 48 GLU GLU B . n B 2 49 GLU 49 49 49 GLU GLU B . n B 2 50 ALA 50 50 50 ALA ALA B . n B 2 51 ASP 51 51 51 ASP ASP B . n B 2 52 PHE 52 52 52 PHE PHE B . n B 2 53 LEU 53 53 53 LEU LEU B . n B 2 54 VAL 54 54 54 VAL VAL B . n B 2 55 HIS 55 55 55 HIS HIS B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 ALA 57 57 57 ALA ALA B . n B 2 58 TYR 58 58 58 TYR TYR B . n B 2 59 PRO 59 59 59 PRO PRO B . n B 2 60 ILE 60 60 60 ILE ILE B . n B 2 61 LEU 61 61 61 LEU LEU B . n B 2 62 ASP 62 62 62 ASP ASP B . n B 2 63 LEU 63 63 63 LEU LEU B . n B 2 64 SER 64 64 64 SER SER B . n B 2 65 LEU 65 65 65 LEU LEU B . n B 2 66 ILE 66 66 66 ILE ILE B . n B 2 67 TRP 67 67 67 TRP TRP B . n B 2 68 MET 68 68 68 MET MET B . n B 2 69 GLY 69 69 69 GLY GLY B . n B 2 70 LEU 70 70 70 LEU LEU B . n B 2 71 SER 71 71 71 SER SER B . n B 2 72 ASN 72 72 72 ASN ASN B . n B 2 73 MET 73 73 73 MET MET B . n B 2 74 TRP 74 74 74 TRP TRP B . n B 2 75 ASN 75 75 75 ASN ASN B . n B 2 76 ASP 76 76 76 ASP ASP B . n B 2 77 CYS 77 77 77 CYS CYS B . n B 2 78 LYS 78 78 78 LYS LYS B . n B 2 79 ARG 79 79 79 ARG ARG B . n B 2 80 GLU 80 80 80 GLU GLU B . n B 2 81 TRP 81 81 81 TRP TRP B . n B 2 82 SER 82 82 82 SER SER B . n B 2 83 ASP 83 83 83 ASP ASP B . n B 2 84 GLY 84 84 84 GLY GLY B . n B 2 85 THR 85 85 85 THR THR B . n B 2 86 LYS 86 86 86 LYS LYS B . n B 2 87 LEU 87 87 87 LEU LEU B . n B 2 88 ASP 88 88 88 ASP ASP B . n B 2 89 PHE 89 89 89 PHE PHE B . n B 2 90 LYS 90 90 90 LYS LYS B . n B 2 91 SER 91 91 91 SER SER B . n B 2 92 TRP 92 92 92 TRP TRP B . n B 2 93 ALA 93 93 93 ALA ALA B . n B 2 94 LYS 94 94 94 LYS LYS B . n B 2 95 THR 95 95 95 THR THR B . n B 2 96 SER 96 96 96 SER SER B . n B 2 97 ASP 97 97 97 ASP ASP B . n B 2 98 CYS 98 98 98 CYS CYS B . n B 2 99 LEU 99 99 99 LEU LEU B . n B 2 100 ILE 100 100 100 ILE ILE B . n B 2 101 GLY 101 101 101 GLY GLY B . n B 2 102 LYS 102 102 102 LYS LYS B . n B 2 103 THR 103 103 103 THR THR B . n B 2 104 ASP 104 104 104 ASP ASP B . n B 2 105 GLY 105 105 105 GLY GLY B . n B 2 106 ASP 106 106 106 ASP ASP B . n B 2 107 ASN 107 107 107 ASN ASN B . n B 2 108 GLN 108 108 108 GLN GLN B . n B 2 109 TRP 109 109 109 TRP TRP B . n B 2 110 LEU 110 110 110 LEU LEU B . n B 2 111 ASN 111 111 111 ASN ASN B . n B 2 112 MET 112 112 112 MET MET B . n B 2 113 ASP 113 113 113 ASP ASP B . n B 2 114 CYS 114 114 114 CYS CYS B . n B 2 115 SER 115 115 115 SER SER B . n B 2 116 LYS 116 116 116 LYS LYS B . n B 2 117 LYS 117 117 117 LYS LYS B . n B 2 118 HIS 118 118 118 HIS HIS B . n B 2 119 TYR 119 119 119 TYR TYR B . n B 2 120 PHE 120 120 120 PHE PHE B . n B 2 121 VAL 121 121 121 VAL VAL B . n B 2 122 CYS 122 122 122 CYS CYS B . n B 2 123 LYS 123 123 123 LYS LYS B . n B 2 124 PHE 124 124 124 PHE PHE B . n B 2 125 LYS 125 125 125 LYS LYS B . n B 2 126 LEU 126 126 126 LEU LEU B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id OCS _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id OCS _pdbx_struct_mod_residue.auth_seq_id 3 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'CYSTEINESULFONIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4490 ? 1 MORE -34 ? 1 'SSA (A^2)' 13130 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-04-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 21.4870 -5.0190 -0.3990 0.3913 0.5398 0.0542 -0.0352 -0.0213 -0.0558 6.0067 21.1565 4.5043 4.7400 -6.0895 -6.9800 -0.1271 -1.2393 0.1990 1.2697 0.2466 -0.3641 -0.0754 0.6733 -0.1195 'X-RAY DIFFRACTION' 2 ? refined 22.5310 -7.2750 -7.2440 0.2508 0.3884 0.1201 -0.0496 -0.0060 -0.0012 3.6542 3.3984 4.7947 -1.7897 3.3180 0.1575 -0.0316 -0.2796 -0.0603 0.3386 0.1953 -0.0742 0.0378 0.3717 -0.1637 'X-RAY DIFFRACTION' 3 ? refined 9.4120 -0.1130 -14.1540 0.2790 0.2186 0.2143 -0.0381 0.0236 -0.0133 6.9098 2.0651 3.9041 1.2456 1.2475 0.7500 -0.1217 -0.1371 0.1825 0.2460 -0.0956 0.2253 -0.5010 -0.1344 0.2173 'X-RAY DIFFRACTION' 4 ? refined 18.4500 2.1370 -9.7720 0.3571 0.2994 0.1649 -0.1233 -0.0045 0.0140 2.2252 4.3358 10.8554 -0.0079 -0.3094 5.5928 -0.1073 -0.0719 0.0958 0.4158 -0.1045 0.1327 -0.2395 0.1642 0.2118 'X-RAY DIFFRACTION' 5 ? refined 24.1500 -12.8740 -14.9710 0.2153 0.4211 0.1895 0.0306 -0.0376 -0.0364 4.8546 1.6093 5.3501 -0.5609 -1.8723 -0.6559 0.1183 -0.1509 -0.0968 0.2280 0.0783 -0.0367 0.4466 0.8364 -0.1967 'X-RAY DIFFRACTION' 6 ? refined 12.7430 -16.9160 -9.4490 0.2871 0.2326 0.2164 -0.0510 0.0476 0.0879 28.7762 8.4051 22.1658 3.6635 3.1274 2.9829 0.5021 -1.4982 -0.7129 0.4887 0.1338 0.3435 0.5193 -0.1050 -0.6359 'X-RAY DIFFRACTION' 7 ? refined 10.7190 -9.6860 -18.6370 0.1899 0.2716 0.2096 -0.0389 0.0130 0.0165 9.0765 11.2146 4.0962 8.3277 3.2534 1.6200 0.1897 -0.4680 -0.2554 -0.0103 -0.2157 0.0531 -0.2003 0.3102 0.0260 'X-RAY DIFFRACTION' 8 ? refined 15.1560 2.3850 -33.6320 0.2798 0.3548 0.1622 -0.1733 -0.0098 0.0066 5.7996 0.2714 8.2677 -0.0084 5.7096 -1.7780 -0.3029 0.2096 0.2275 0.1922 0.0526 0.0836 -0.7943 0.8119 0.2503 'X-RAY DIFFRACTION' 9 ? refined 13.4870 0.6480 -49.6870 0.1716 0.3068 0.1701 -0.0014 0.0539 0.0010 6.1292 4.2200 12.3763 -0.1075 -0.4962 2.6377 0.2499 -0.0804 0.0751 -0.2502 -0.1741 -0.1846 -0.1954 0.4241 -0.0757 'X-RAY DIFFRACTION' 10 ? refined 4.2880 0.6670 -35.8770 0.1907 0.4263 0.1799 -0.0676 0.0496 -0.0557 -1.3114 7.3923 9.8418 1.4236 -1.5954 -6.2913 0.1871 -0.1640 0.1177 0.3477 -0.0644 0.2857 -0.0990 0.0293 -0.1228 'X-RAY DIFFRACTION' 11 ? refined 13.2070 -7.0870 -25.9330 0.1911 0.3550 0.1653 -0.0828 -0.0188 0.0277 2.5559 4.9644 6.2115 2.3562 -0.2887 -4.5884 -0.2220 0.2947 0.0258 -0.1439 0.2636 0.1558 -0.0657 0.2395 -0.0417 'X-RAY DIFFRACTION' 12 ? refined 15.5910 -13.9870 -22.9620 0.2003 0.3139 0.2225 -0.0272 -0.0101 -0.0510 3.4666 5.6096 5.5870 -0.0264 -0.1094 -2.0495 0.0069 0.2731 -0.4344 -0.1927 0.1987 0.1303 0.4253 0.3499 -0.2056 'X-RAY DIFFRACTION' 13 ? refined 13.0650 -3.7350 -14.9710 0.2324 0.2810 0.1974 -0.0628 0.0230 0.0047 6.7222 0.8675 5.8248 0.8057 4.9816 1.0038 -0.0230 -0.1153 0.1051 0.0816 -0.0146 0.0852 -0.1131 0.0884 0.0376 'X-RAY DIFFRACTION' 14 ? refined 0.7690 -3.5760 -67.3380 0.4908 0.4200 0.1663 0.0452 -0.1082 -0.0645 0.6065 9.8653 10.1590 -1.6193 3.3590 -6.8891 -0.0413 0.6039 0.0417 -1.0776 -0.1558 0.0736 1.3006 0.6135 0.1972 'X-RAY DIFFRACTION' 15 ? refined 1.8200 -6.6040 -55.3740 0.2296 0.2114 0.1570 0.0008 -0.0308 -0.0829 2.7738 4.9870 2.3297 -0.3746 0.5306 -1.1659 0.1069 0.1375 -0.1649 -0.4747 -0.0638 0.1719 0.1175 0.0476 -0.0431 'X-RAY DIFFRACTION' 16 ? refined 9.9410 -14.0320 -54.8530 0.3992 0.2565 0.3275 0.1523 0.0053 -0.1414 5.1908 1.4269 11.3060 2.5895 -6.1552 -2.9435 0.1114 0.2517 -0.4896 -0.3753 -0.0133 -0.6593 0.8102 0.6018 -0.0981 'X-RAY DIFFRACTION' 17 ? refined 8.9960 -6.9870 -58.7840 0.3192 0.3451 0.1684 0.0805 0.0434 -0.0745 3.4178 5.3860 6.3060 1.9644 0.5671 2.2663 -0.0110 0.4961 -0.2679 -0.5206 0.0123 -0.2191 0.2397 0.5389 -0.0013 'X-RAY DIFFRACTION' 18 ? refined -4.5410 -1.3780 -49.8660 0.1583 0.2629 0.2879 -0.0173 0.0399 -0.1155 3.3517 6.5433 1.7537 1.8849 0.2349 -0.9391 0.2217 -0.1108 0.3136 0.0994 -0.1740 0.8219 0.0006 -0.1096 -0.0477 'X-RAY DIFFRACTION' 19 ? refined 11.3300 -5.9310 -41.9850 0.2321 0.3491 0.2065 -0.0483 -0.0092 -0.0144 3.5452 3.8808 6.9261 2.7030 3.1577 2.7401 0.3810 -0.0752 -0.4135 0.0479 -0.1177 -0.2087 0.1262 0.6889 -0.2633 'X-RAY DIFFRACTION' 20 ? refined 21.9710 -0.3390 -27.8150 0.1330 0.5761 0.0728 -0.2604 -0.0264 0.0873 5.3388 10.0876 30.6131 -4.7814 4.6615 0.8921 0.5744 0.4798 -0.0759 -0.2497 -0.3002 -0.1948 -1.3034 1.6302 -0.2742 'X-RAY DIFFRACTION' 21 ? refined 26.6190 -3.5430 -23.1460 0.1426 0.7010 0.0384 -0.1832 -0.0324 0.0467 5.1464 13.2499 3.6666 -2.4443 -0.8243 2.2674 0.2974 0.3990 0.0472 -0.1636 -0.2394 -0.5342 -0.4018 1.1764 -0.0580 'X-RAY DIFFRACTION' 22 ? refined 16.9890 -12.3440 -33.2290 0.3190 0.6386 0.3971 -0.0117 -0.0813 0.0108 22.0322 -2.2184 80.3724 -5.1265 45.8592 -0.7670 1.1967 0.1550 -2.1129 -0.7607 1.1436 0.6099 1.6785 1.7735 -2.3403 'X-RAY DIFFRACTION' 23 ? refined 0.0840 -5.8410 -43.2550 0.2159 0.5596 0.2342 -0.1287 0.0707 -0.1313 7.8923 8.0833 7.8384 -3.7584 15.1121 -5.2944 0.5825 -1.3115 -0.0249 -0.0761 -0.2794 0.7142 0.4652 -0.7642 -0.3032 'X-RAY DIFFRACTION' 24 ? refined 1.5490 -3.1750 -40.7160 0.1952 0.4962 0.2906 -0.1747 0.0839 -0.1441 4.2990 8.6866 5.1302 -2.7056 2.3418 -1.0636 0.1889 -1.0029 0.2855 0.7972 -0.1841 0.9486 0.0165 -0.3563 -0.0048 'X-RAY DIFFRACTION' 25 ? refined 3.5590 -15.0590 -45.8840 0.3457 0.2295 0.2592 -0.0084 -0.0361 -0.0171 2.5730 4.6066 8.0270 2.6292 -0.7407 -1.4460 0.5332 -0.4153 -0.3246 -0.0384 -0.4512 0.0624 0.7617 0.1231 -0.0820 'X-RAY DIFFRACTION' 26 ? refined 7.0580 -1.5610 -61.1590 0.4278 0.3899 0.1273 0.0221 0.0534 -0.0595 8.0863 2.3693 2.6370 -1.4381 5.0582 0.4985 -0.3642 0.4871 0.3507 -0.6191 0.0818 0.0941 0.0335 0.7568 0.2824 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2 ? ? A 8 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 9 ? ? A 19 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 20 ? ? A 32 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 33 ? ? A 43 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 44 ? ? A 57 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 58 ? ? A 62 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 63 ? ? A 69 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 70 ? ? A 80 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 81 ? ? A 90 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 91 ? ? A 99 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 100 ? ? A 106 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 A 107 ? ? A 117 ? ? ? ? 'X-RAY DIFFRACTION' 13 13 A 118 ? ? A 131 ? ? ? ? 'X-RAY DIFFRACTION' 14 14 B 1 ? ? B 9 ? ? ? ? 'X-RAY DIFFRACTION' 15 15 B 10 ? ? B 25 ? ? ? ? 'X-RAY DIFFRACTION' 16 16 B 26 ? ? B 33 ? ? ? ? 'X-RAY DIFFRACTION' 17 17 B 34 ? ? B 44 ? ? ? ? 'X-RAY DIFFRACTION' 18 18 B 45 ? ? B 65 ? ? ? ? 'X-RAY DIFFRACTION' 19 19 B 66 ? ? B 76 ? ? ? ? 'X-RAY DIFFRACTION' 20 20 B 77 ? ? B 81 ? ? ? ? 'X-RAY DIFFRACTION' 21 21 B 82 ? ? B 91 ? ? ? ? 'X-RAY DIFFRACTION' 22 22 B 92 ? ? B 97 ? ? ? ? 'X-RAY DIFFRACTION' 23 23 B 98 ? ? B 104 ? ? ? ? 'X-RAY DIFFRACTION' 24 24 B 105 ? ? B 112 ? ? ? ? 'X-RAY DIFFRACTION' 25 25 B 113 ? ? B 121 ? ? ? ? 'X-RAY DIFFRACTION' 26 26 B 122 ? ? B 126 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.sequence_details 'THE THE EXPERIMENTAL INFO OF UNIPROT (Q8AYA3, AGGB2_AGKAC) SHOWS CONFLICT AT THIS POSITION: A -> S (IN REF.1; AAL66390).' _pdbx_entry_details.entry_id 3UBU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 13 ? ? 70.98 -0.93 2 1 LYS A 20 ? ? -93.55 57.37 3 1 ASN A 93 ? ? -151.80 46.62 4 1 ASP B 62 ? ? 54.39 -145.07 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 0 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 94 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id NZ _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.label_seq_id 94 _pdbx_unobs_or_zero_occ_atoms.label_atom_id NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ASP _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ASP _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 GLYCEROL GOL 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 132 2 SO4 SO4 A . D 4 GOL 1 127 1 GOL GOL B . E 4 GOL 1 128 2 GOL GOL B . F 4 GOL 1 129 3 GOL GOL B . G 5 HOH 1 133 2 HOH HOH A . G 5 HOH 2 134 134 HOH HOH A . G 5 HOH 3 135 135 HOH HOH A . G 5 HOH 4 136 3 HOH HOH A . G 5 HOH 5 137 5 HOH HOH A . G 5 HOH 6 138 8 HOH HOH A . G 5 HOH 7 139 9 HOH HOH A . G 5 HOH 8 140 10 HOH HOH A . G 5 HOH 9 141 11 HOH HOH A . G 5 HOH 10 142 12 HOH HOH A . G 5 HOH 11 143 13 HOH HOH A . G 5 HOH 12 144 14 HOH HOH A . G 5 HOH 13 145 22 HOH HOH A . G 5 HOH 14 146 24 HOH HOH A . G 5 HOH 15 147 25 HOH HOH A . G 5 HOH 16 148 26 HOH HOH A . G 5 HOH 17 149 30 HOH HOH A . G 5 HOH 18 150 32 HOH HOH A . G 5 HOH 19 151 33 HOH HOH A . G 5 HOH 20 152 35 HOH HOH A . G 5 HOH 21 153 36 HOH HOH A . G 5 HOH 22 154 37 HOH HOH A . G 5 HOH 23 155 40 HOH HOH A . G 5 HOH 24 156 46 HOH HOH A . G 5 HOH 25 157 47 HOH HOH A . G 5 HOH 26 158 50 HOH HOH A . G 5 HOH 27 159 52 HOH HOH A . G 5 HOH 28 160 53 HOH HOH A . G 5 HOH 29 161 60 HOH HOH A . G 5 HOH 30 162 63 HOH HOH A . G 5 HOH 31 163 64 HOH HOH A . G 5 HOH 32 164 65 HOH HOH A . G 5 HOH 33 165 69 HOH HOH A . G 5 HOH 34 166 71 HOH HOH A . G 5 HOH 35 167 72 HOH HOH A . G 5 HOH 36 168 74 HOH HOH A . G 5 HOH 37 169 75 HOH HOH A . G 5 HOH 38 170 77 HOH HOH A . G 5 HOH 39 171 83 HOH HOH A . G 5 HOH 40 172 87 HOH HOH A . G 5 HOH 41 173 89 HOH HOH A . G 5 HOH 42 174 90 HOH HOH A . G 5 HOH 43 175 91 HOH HOH A . G 5 HOH 44 176 92 HOH HOH A . G 5 HOH 45 177 94 HOH HOH A . G 5 HOH 46 178 96 HOH HOH A . G 5 HOH 47 179 97 HOH HOH A . G 5 HOH 48 180 101 HOH HOH A . G 5 HOH 49 181 102 HOH HOH A . G 5 HOH 50 182 105 HOH HOH A . G 5 HOH 51 183 109 HOH HOH A . G 5 HOH 52 184 110 HOH HOH A . G 5 HOH 53 185 115 HOH HOH A . G 5 HOH 54 186 117 HOH HOH A . G 5 HOH 55 187 118 HOH HOH A . G 5 HOH 56 188 119 HOH HOH A . G 5 HOH 57 189 120 HOH HOH A . G 5 HOH 58 190 121 HOH HOH A . G 5 HOH 59 191 125 HOH HOH A . G 5 HOH 60 192 126 HOH HOH A . G 5 HOH 61 193 128 HOH HOH A . G 5 HOH 62 194 130 HOH HOH A . G 5 HOH 63 195 132 HOH HOH A . H 5 HOH 1 130 1 HOH HOH B . H 5 HOH 2 131 131 HOH HOH B . H 5 HOH 3 132 4 HOH HOH B . H 5 HOH 4 133 133 HOH HOH B . H 5 HOH 5 134 6 HOH HOH B . H 5 HOH 6 135 7 HOH HOH B . H 5 HOH 7 136 15 HOH HOH B . H 5 HOH 8 137 16 HOH HOH B . H 5 HOH 9 138 17 HOH HOH B . H 5 HOH 10 139 18 HOH HOH B . H 5 HOH 11 140 19 HOH HOH B . H 5 HOH 12 141 20 HOH HOH B . H 5 HOH 13 142 21 HOH HOH B . H 5 HOH 14 143 23 HOH HOH B . H 5 HOH 15 144 27 HOH HOH B . H 5 HOH 16 145 28 HOH HOH B . H 5 HOH 17 146 29 HOH HOH B . H 5 HOH 18 147 31 HOH HOH B . H 5 HOH 19 148 34 HOH HOH B . H 5 HOH 20 149 38 HOH HOH B . H 5 HOH 21 150 39 HOH HOH B . H 5 HOH 22 151 41 HOH HOH B . H 5 HOH 23 152 42 HOH HOH B . H 5 HOH 24 153 43 HOH HOH B . H 5 HOH 25 154 44 HOH HOH B . H 5 HOH 26 155 45 HOH HOH B . H 5 HOH 27 156 48 HOH HOH B . H 5 HOH 28 157 49 HOH HOH B . H 5 HOH 29 158 51 HOH HOH B . H 5 HOH 30 159 54 HOH HOH B . H 5 HOH 31 160 55 HOH HOH B . H 5 HOH 32 161 56 HOH HOH B . H 5 HOH 33 162 57 HOH HOH B . H 5 HOH 34 163 58 HOH HOH B . H 5 HOH 35 164 59 HOH HOH B . H 5 HOH 36 165 61 HOH HOH B . H 5 HOH 37 166 62 HOH HOH B . H 5 HOH 38 167 66 HOH HOH B . H 5 HOH 39 168 67 HOH HOH B . H 5 HOH 40 169 68 HOH HOH B . H 5 HOH 41 170 70 HOH HOH B . H 5 HOH 42 171 73 HOH HOH B . H 5 HOH 43 172 76 HOH HOH B . H 5 HOH 44 173 78 HOH HOH B . H 5 HOH 45 174 79 HOH HOH B . H 5 HOH 46 175 80 HOH HOH B . H 5 HOH 47 176 81 HOH HOH B . H 5 HOH 48 177 82 HOH HOH B . H 5 HOH 49 178 84 HOH HOH B . H 5 HOH 50 179 85 HOH HOH B . H 5 HOH 51 180 86 HOH HOH B . H 5 HOH 52 181 88 HOH HOH B . H 5 HOH 53 182 93 HOH HOH B . H 5 HOH 54 183 95 HOH HOH B . H 5 HOH 55 184 98 HOH HOH B . H 5 HOH 56 185 99 HOH HOH B . H 5 HOH 57 186 100 HOH HOH B . H 5 HOH 58 187 103 HOH HOH B . H 5 HOH 59 188 104 HOH HOH B . H 5 HOH 60 189 106 HOH HOH B . H 5 HOH 61 190 107 HOH HOH B . H 5 HOH 62 191 108 HOH HOH B . H 5 HOH 63 192 111 HOH HOH B . H 5 HOH 64 193 112 HOH HOH B . H 5 HOH 65 194 113 HOH HOH B . H 5 HOH 66 195 114 HOH HOH B . H 5 HOH 67 196 116 HOH HOH B . H 5 HOH 68 197 122 HOH HOH B . H 5 HOH 69 198 123 HOH HOH B . H 5 HOH 70 199 124 HOH HOH B . H 5 HOH 71 200 127 HOH HOH B . H 5 HOH 72 201 129 HOH HOH B . #