data_3UC7 # _entry.id 3UC7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UC7 pdb_00003uc7 10.2210/pdb3uc7/pdb RCSB RCSB068570 ? ? WWPDB D_1000068570 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3UC8 . unspecified PDB 2LL5 . unspecified # _pdbx_database_status.entry_id 3UC7 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scian, M.' 1 'Le Trong, I.' 2 'Stenkamp, R.E.' 3 'Andersen, N.H.' 4 # _citation.id primary _citation.title 'Crystal and NMR structures of a Trp-cage mini-protein benchmark for computational fold prediction.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 12521 _citation.page_last 12525 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22802678 _citation.pdbx_database_id_DOI 10.1073/pnas.1121421109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scian, M.' 1 ? primary 'Lin, J.C.' 2 ? primary 'Le Trong, I.' 3 ? primary 'Makhatadze, G.I.' 4 ? primary 'Stenkamp, R.E.' 5 ? primary 'Andersen, N.H.' 6 ? # _cell.length_a 57.697 _cell.length_b 48.748 _cell.length_c 35.259 _cell.angle_alpha 90.000 _cell.angle_beta 116.910 _cell.angle_gamma 90.000 _cell.entry_id 3UC7 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3UC7 _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Cyclo-TC1 2144.240 6 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GDAYAQWLADGGPSSGRPPPSG _entity_poly.pdbx_seq_one_letter_code_can GDAYAQWLADGGPSSGRPPPSG _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 ALA n 1 4 TYR n 1 5 ALA n 1 6 GLN n 1 7 TRP n 1 8 LEU n 1 9 ALA n 1 10 ASP n 1 11 GLY n 1 12 GLY n 1 13 PRO n 1 14 SER n 1 15 SER n 1 16 GLY n 1 17 ARG n 1 18 PRO n 1 19 PRO n 1 20 PRO n 1 21 SER n 1 22 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'solid-phase synthesis and cyclization' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3UC7 _struct_ref.pdbx_db_accession 3UC7 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GDAYAQWLADGGPSSGRPPPSG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UC7 A 1 ? 22 ? 3UC7 -1 ? 21 ? -1 21 2 1 3UC7 B 1 ? 22 ? 3UC7 -1 ? 21 ? -1 21 3 1 3UC7 C 1 ? 22 ? 3UC7 -1 ? 21 ? -1 21 4 1 3UC7 D 1 ? 22 ? 3UC7 -1 ? 21 ? -1 21 5 1 3UC7 E 1 ? 22 ? 3UC7 -1 ? 21 ? -1 21 6 1 3UC7 F 1 ? 22 ? 3UC7 -1 ? 21 ? -1 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.crystals_number 1 _exptl.entry_id 3UC7 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.72 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 28.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 2.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2 M Tris-HCl, 0.2 M magnesium chloride, 2.0 M sodium chloride, pH 2.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2009-01-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.82 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.82 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 # _reflns.entry_id 3UC7 _reflns.d_resolution_high 0.990 _reflns.d_resolution_low 50.0 _reflns.number_obs 39329 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_netI_over_sigmaI 9.3 _reflns.pdbx_chi_squared 1.130 _reflns.pdbx_redundancy 11.4 _reflns.percent_possible_obs 81.3 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 39329 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 0.990 1.030 ? ? ? ? ? ? 0.928 3.70 ? 1498 31.1 1 1 1.030 1.070 ? ? ? 0.783 ? ? 1.007 5.00 ? 2149 44.6 2 1 1.070 1.110 ? ? ? 0.714 ? ? 1.022 6.10 ? 3155 65.6 3 1 1.110 1.170 ? ? ? 0.519 ? ? 1.033 7.60 ? 3988 82.6 4 1 1.170 1.250 ? ? ? 0.489 ? ? 1.077 9.40 ? 4547 94.3 5 1 1.250 1.340 ? ? ? 0.387 ? ? 1.145 12.10 ? 4714 97.9 6 1 1.340 1.480 ? ? ? 0.295 ? ? 1.179 14.70 ? 4742 98.4 7 1 1.480 1.690 ? ? ? 0.159 ? ? 1.069 15.20 ? 4798 99.1 8 1 1.690 2.130 ? ? ? 0.090 ? ? 1.166 15.20 ? 4832 99.6 9 1 2.130 50.000 ? ? ? 0.068 ? ? 1.230 13.30 ? 4906 99.6 10 1 # _refine.entry_id 3UC7 _refine.ls_d_res_high 1.100 _refine.ls_d_res_low 35.39 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.81 _refine.ls_number_reflns_obs 33543 _refine.ls_number_reflns_all 33543 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1514 _refine.ls_R_factor_R_work 0.1491 _refine.ls_wR_factor_R_work 0.1564 _refine.ls_R_factor_R_free 0.1937 _refine.ls_wR_factor_R_free 0.2024 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1695 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.2740 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.9100 _refine.aniso_B[2][2] -0.5800 _refine.aniso_B[3][3] -1.2200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.1300 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9820 _refine.correlation_coeff_Fo_to_Fc_free 0.9680 _refine.overall_SU_R_Cruickshank_DPI 0.0368 _refine.overall_SU_R_free 0.0400 _refine.pdbx_overall_ESU_R_Free 0.0400 _refine.overall_SU_ML 0.0380 _refine.overall_SU_B 1.8340 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2LL5' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7959 _refine.B_iso_max 47.190 _refine.B_iso_min 8.420 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.100 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.037 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 906 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 1015 _refine_hist.d_res_high 1.100 _refine_hist.d_res_low 35.39 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 973 0.029 0.021 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 701 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1335 2.402 1.985 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1687 1.186 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 128 4.775 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 38 22.408 22.632 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 96 13.696 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 18.126 15.000 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1141 0.013 0.023 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 189 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 660 4.652 4.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 272 3.183 4.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1032 6.090 6.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 313 6.730 6.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 303 7.797 10.000 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1674 2.109 1.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 113 18.643 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 1637 9.739 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.100 _refine_ls_shell.d_res_low 1.129 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 73.62 _refine_ls_shell.number_reflns_R_work 1838 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2450 _refine_ls_shell.R_factor_R_free 0.2940 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1926 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UC7 _struct.title 'Trp-cage cyclo-TC1 - monoclinic crystal form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UC7 _struct_keywords.text 'mini-protein, Trp-cage, cyclic peptide, multimer, protein-protein interaction, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ASP A 10 ? GLY A -1 ASP A 9 1 ? 10 HELX_P HELX_P2 2 GLY A 11 ? GLY A 16 ? GLY A 10 GLY A 15 5 ? 6 HELX_P HELX_P3 3 ASP B 2 ? ASP B 10 ? ASP B 1 ASP B 9 1 ? 9 HELX_P HELX_P4 4 GLY B 11 ? GLY B 16 ? GLY B 10 GLY B 15 5 ? 6 HELX_P HELX_P5 5 ASP C 2 ? ASP C 10 ? ASP C 1 ASP C 9 1 ? 9 HELX_P HELX_P6 6 GLY C 11 ? GLY C 16 ? GLY C 10 GLY C 15 5 ? 6 HELX_P HELX_P7 7 ASP D 2 ? ASP D 10 ? ASP D 1 ASP D 9 1 ? 9 HELX_P HELX_P8 8 GLY D 11 ? GLY D 16 ? GLY D 10 GLY D 15 5 ? 6 HELX_P HELX_P9 9 ASP E 2 ? ASP E 10 ? ASP E 1 ASP E 9 1 ? 9 HELX_P HELX_P10 10 GLY E 11 ? SER E 15 ? GLY E 10 SER E 14 5 ? 5 HELX_P HELX_P11 11 ASP F 2 ? ASP F 10 ? ASP F 1 ASP F 9 1 ? 9 HELX_P HELX_P12 12 GLY F 11 ? GLY F 16 ? GLY F 10 GLY F 15 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 N ? ? ? 1_555 A GLY 22 C ? ? A GLY -1 A GLY 21 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? B GLY 1 N ? ? ? 1_555 B GLY 22 C ? ? B GLY -1 B GLY 21 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale3 covale both ? C GLY 1 N ? ? ? 1_555 C GLY 22 C ? ? C GLY -1 C GLY 21 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale4 covale both ? D GLY 1 N ? ? ? 1_555 D GLY 22 C ? ? D GLY -1 D GLY 21 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? E GLY 1 N ? ? ? 1_555 E GLY 22 C ? ? E GLY -1 E GLY 21 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale6 covale both ? F GLY 1 N ? ? ? 1_555 F GLY 22 C ? ? F GLY -1 F GLY 21 1_555 ? ? ? ? ? ? ? 1.361 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CL 504 ? 5 'BINDING SITE FOR RESIDUE CL B 504' AC2 Software D CL 503 ? 3 'BINDING SITE FOR RESIDUE CL D 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER B 14 ? SER B 13 . ? 1_555 ? 2 AC1 5 ASP E 2 ? ASP E 1 . ? 2_655 ? 3 AC1 5 ALA E 3 ? ALA E 2 . ? 2_655 ? 4 AC1 5 GLY E 22 ? GLY E 21 . ? 2_655 ? 5 AC1 5 HOH M . ? HOH E 342 . ? 2_655 ? 6 AC2 3 PRO A 19 ? PRO A 18 . ? 4_544 ? 7 AC2 3 ASP B 2 ? ASP B 1 . ? 4_544 ? 8 AC2 3 GLY D 1 ? GLY D -1 . ? 1_555 ? # _atom_sites.entry_id 3UC7 _atom_sites.fract_transf_matrix[1][1] 0.017332 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008798 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020514 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031806 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 -1 GLY GLY A . n A 1 2 ASP 2 1 1 ASP ASP A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 TYR 4 3 3 TYR TYR A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 TRP 7 6 6 TRP TRP A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 ALA 9 8 8 ALA ALA A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 PRO 18 17 17 PRO PRO A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 GLY 22 21 21 GLY GLY A . n B 1 1 GLY 1 -1 -1 GLY GLY B . n B 1 2 ASP 2 1 1 ASP ASP B . n B 1 3 ALA 3 2 2 ALA ALA B . n B 1 4 TYR 4 3 3 TYR TYR B . n B 1 5 ALA 5 4 4 ALA ALA B . n B 1 6 GLN 6 5 5 GLN GLN B . n B 1 7 TRP 7 6 6 TRP TRP B . n B 1 8 LEU 8 7 7 LEU LEU B . n B 1 9 ALA 9 8 8 ALA ALA B . n B 1 10 ASP 10 9 9 ASP ASP B . n B 1 11 GLY 11 10 10 GLY GLY B . n B 1 12 GLY 12 11 11 GLY GLY B . n B 1 13 PRO 13 12 12 PRO PRO B . n B 1 14 SER 14 13 13 SER SER B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 ARG 17 16 16 ARG ARG B . n B 1 18 PRO 18 17 17 PRO PRO B . n B 1 19 PRO 19 18 18 PRO PRO B . n B 1 20 PRO 20 19 19 PRO PRO B . n B 1 21 SER 21 20 20 SER SER B . n B 1 22 GLY 22 21 21 GLY GLY B . n C 1 1 GLY 1 -1 -1 GLY GLY C . n C 1 2 ASP 2 1 1 ASP ASP C . n C 1 3 ALA 3 2 2 ALA ALA C . n C 1 4 TYR 4 3 3 TYR TYR C . n C 1 5 ALA 5 4 4 ALA ALA C . n C 1 6 GLN 6 5 5 GLN GLN C . n C 1 7 TRP 7 6 6 TRP TRP C . n C 1 8 LEU 8 7 7 LEU LEU C . n C 1 9 ALA 9 8 8 ALA ALA C . n C 1 10 ASP 10 9 9 ASP ASP C . n C 1 11 GLY 11 10 10 GLY GLY C . n C 1 12 GLY 12 11 11 GLY GLY C . n C 1 13 PRO 13 12 12 PRO PRO C . n C 1 14 SER 14 13 13 SER SER C . n C 1 15 SER 15 14 14 SER SER C . n C 1 16 GLY 16 15 15 GLY GLY C . n C 1 17 ARG 17 16 16 ARG ARG C . n C 1 18 PRO 18 17 17 PRO PRO C . n C 1 19 PRO 19 18 18 PRO PRO C . n C 1 20 PRO 20 19 19 PRO PRO C . n C 1 21 SER 21 20 20 SER SER C . n C 1 22 GLY 22 21 21 GLY GLY C . n D 1 1 GLY 1 -1 -1 GLY GLY D . n D 1 2 ASP 2 1 1 ASP ASP D . n D 1 3 ALA 3 2 2 ALA ALA D . n D 1 4 TYR 4 3 3 TYR TYR D . n D 1 5 ALA 5 4 4 ALA ALA D . n D 1 6 GLN 6 5 5 GLN GLN D . n D 1 7 TRP 7 6 6 TRP TRP D . n D 1 8 LEU 8 7 7 LEU LEU D . n D 1 9 ALA 9 8 8 ALA ALA D . n D 1 10 ASP 10 9 9 ASP ASP D . n D 1 11 GLY 11 10 10 GLY GLY D . n D 1 12 GLY 12 11 11 GLY GLY D . n D 1 13 PRO 13 12 12 PRO PRO D . n D 1 14 SER 14 13 13 SER SER D . n D 1 15 SER 15 14 14 SER SER D . n D 1 16 GLY 16 15 15 GLY GLY D . n D 1 17 ARG 17 16 16 ARG ARG D . n D 1 18 PRO 18 17 17 PRO PRO D . n D 1 19 PRO 19 18 18 PRO PRO D . n D 1 20 PRO 20 19 19 PRO PRO D . n D 1 21 SER 21 20 20 SER SER D . n D 1 22 GLY 22 21 21 GLY GLY D . n E 1 1 GLY 1 -1 -1 GLY GLY E . n E 1 2 ASP 2 1 1 ASP ASP E . n E 1 3 ALA 3 2 2 ALA ALA E . n E 1 4 TYR 4 3 3 TYR TYR E . n E 1 5 ALA 5 4 4 ALA ALA E . n E 1 6 GLN 6 5 5 GLN GLN E . n E 1 7 TRP 7 6 6 TRP TRP E . n E 1 8 LEU 8 7 7 LEU LEU E . n E 1 9 ALA 9 8 8 ALA ALA E . n E 1 10 ASP 10 9 9 ASP ASP E . n E 1 11 GLY 11 10 10 GLY GLY E . n E 1 12 GLY 12 11 11 GLY GLY E . n E 1 13 PRO 13 12 12 PRO PRO E . n E 1 14 SER 14 13 13 SER SER E . n E 1 15 SER 15 14 14 SER SER E . n E 1 16 GLY 16 15 15 GLY GLY E . n E 1 17 ARG 17 16 16 ARG ARG E . n E 1 18 PRO 18 17 17 PRO PRO E . n E 1 19 PRO 19 18 18 PRO PRO E . n E 1 20 PRO 20 19 19 PRO PRO E . n E 1 21 SER 21 20 20 SER SER E . n E 1 22 GLY 22 21 21 GLY GLY E . n F 1 1 GLY 1 -1 -1 GLY GLY F . n F 1 2 ASP 2 1 1 ASP ASP F . n F 1 3 ALA 3 2 2 ALA ALA F . n F 1 4 TYR 4 3 3 TYR TYR F . n F 1 5 ALA 5 4 4 ALA ALA F . n F 1 6 GLN 6 5 5 GLN GLN F . n F 1 7 TRP 7 6 6 TRP TRP F . n F 1 8 LEU 8 7 7 LEU LEU F . n F 1 9 ALA 9 8 8 ALA ALA F . n F 1 10 ASP 10 9 9 ASP ASP F . n F 1 11 GLY 11 10 10 GLY GLY F . n F 1 12 GLY 12 11 11 GLY GLY F . n F 1 13 PRO 13 12 12 PRO PRO F . n F 1 14 SER 14 13 13 SER SER F . n F 1 15 SER 15 14 14 SER SER F . n F 1 16 GLY 16 15 15 GLY GLY F . n F 1 17 ARG 17 16 16 ARG ARG F . n F 1 18 PRO 18 17 17 PRO PRO F . n F 1 19 PRO 19 18 18 PRO PRO F . n F 1 20 PRO 20 19 19 PRO PRO F . n F 1 21 SER 21 20 20 SER SER F . n F 1 22 GLY 22 21 21 GLY GLY F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CL 1 504 504 CL CL B . H 2 CL 1 503 503 CL CL D . I 3 HOH 1 309 309 HOH HOH A . I 3 HOH 2 311 311 HOH HOH A . I 3 HOH 3 314 314 HOH HOH A . I 3 HOH 4 321 321 HOH HOH A . I 3 HOH 5 323 323 HOH HOH A . I 3 HOH 6 327 327 HOH HOH A . I 3 HOH 7 335 335 HOH HOH A . I 3 HOH 8 336 336 HOH HOH A . I 3 HOH 9 341 341 HOH HOH A . I 3 HOH 10 343 343 HOH HOH A . I 3 HOH 11 369 369 HOH HOH A . I 3 HOH 12 370 370 HOH HOH A . I 3 HOH 13 371 371 HOH HOH A . I 3 HOH 14 372 372 HOH HOH A . I 3 HOH 15 373 373 HOH HOH A . I 3 HOH 16 375 375 HOH HOH A . I 3 HOH 17 376 376 HOH HOH A . I 3 HOH 18 380 380 HOH HOH A . I 3 HOH 19 384 384 HOH HOH A . I 3 HOH 20 397 397 HOH HOH A . I 3 HOH 21 399 399 HOH HOH A . I 3 HOH 22 401 401 HOH HOH A . I 3 HOH 23 402 402 HOH HOH A . I 3 HOH 24 403 403 HOH HOH A . I 3 HOH 25 404 404 HOH HOH A . I 3 HOH 26 405 405 HOH HOH A . I 3 HOH 27 406 406 HOH HOH A . I 3 HOH 28 407 407 HOH HOH A . J 3 HOH 1 301 301 HOH HOH B . J 3 HOH 2 330 330 HOH HOH B . J 3 HOH 3 331 331 HOH HOH B . J 3 HOH 4 333 333 HOH HOH B . J 3 HOH 5 340 340 HOH HOH B . J 3 HOH 6 355 355 HOH HOH B . J 3 HOH 7 358 358 HOH HOH B . J 3 HOH 8 360 360 HOH HOH B . J 3 HOH 9 377 377 HOH HOH B . J 3 HOH 10 389 389 HOH HOH B . J 3 HOH 11 390 390 HOH HOH B . J 3 HOH 12 400 400 HOH HOH B . K 3 HOH 1 302 302 HOH HOH C . K 3 HOH 2 310 310 HOH HOH C . K 3 HOH 3 312 312 HOH HOH C . K 3 HOH 4 318 318 HOH HOH C . K 3 HOH 5 328 328 HOH HOH C . K 3 HOH 6 329 329 HOH HOH C . K 3 HOH 7 345 345 HOH HOH C . K 3 HOH 8 350 350 HOH HOH C . K 3 HOH 9 351 351 HOH HOH C . K 3 HOH 10 354 354 HOH HOH C . K 3 HOH 11 356 356 HOH HOH C . K 3 HOH 12 357 357 HOH HOH C . K 3 HOH 13 368 368 HOH HOH C . K 3 HOH 14 378 378 HOH HOH C . K 3 HOH 15 388 388 HOH HOH C . K 3 HOH 16 393 393 HOH HOH C . L 3 HOH 1 304 304 HOH HOH D . L 3 HOH 2 315 315 HOH HOH D . L 3 HOH 3 316 316 HOH HOH D . L 3 HOH 4 317 317 HOH HOH D . L 3 HOH 5 325 325 HOH HOH D . L 3 HOH 6 326 326 HOH HOH D . L 3 HOH 7 337 337 HOH HOH D . L 3 HOH 8 344 344 HOH HOH D . L 3 HOH 9 349 349 HOH HOH D . L 3 HOH 10 361 361 HOH HOH D . L 3 HOH 11 362 362 HOH HOH D . L 3 HOH 12 363 363 HOH HOH D . L 3 HOH 13 364 364 HOH HOH D . L 3 HOH 14 365 365 HOH HOH D . L 3 HOH 15 366 366 HOH HOH D . L 3 HOH 16 367 367 HOH HOH D . L 3 HOH 17 381 381 HOH HOH D . L 3 HOH 18 382 382 HOH HOH D . L 3 HOH 19 392 392 HOH HOH D . M 3 HOH 1 306 306 HOH HOH E . M 3 HOH 2 307 307 HOH HOH E . M 3 HOH 3 320 320 HOH HOH E . M 3 HOH 4 332 332 HOH HOH E . M 3 HOH 5 334 334 HOH HOH E . M 3 HOH 6 338 338 HOH HOH E . M 3 HOH 7 342 342 HOH HOH E . M 3 HOH 8 346 346 HOH HOH E . M 3 HOH 9 347 347 HOH HOH E . M 3 HOH 10 353 353 HOH HOH E . M 3 HOH 11 359 359 HOH HOH E . M 3 HOH 12 383 383 HOH HOH E . N 3 HOH 1 303 303 HOH HOH F . N 3 HOH 2 305 305 HOH HOH F . N 3 HOH 3 308 308 HOH HOH F . N 3 HOH 4 313 313 HOH HOH F . N 3 HOH 5 319 319 HOH HOH F . N 3 HOH 6 322 322 HOH HOH F . N 3 HOH 7 324 324 HOH HOH F . N 3 HOH 8 339 339 HOH HOH F . N 3 HOH 9 348 348 HOH HOH F . N 3 HOH 10 352 352 HOH HOH F . N 3 HOH 11 374 374 HOH HOH F . N 3 HOH 12 379 379 HOH HOH F . N 3 HOH 13 385 385 HOH HOH F . N 3 HOH 14 386 386 HOH HOH F . N 3 HOH 15 387 387 HOH HOH F . N 3 HOH 16 391 391 HOH HOH F . N 3 HOH 17 394 394 HOH HOH F . N 3 HOH 18 395 395 HOH HOH F . N 3 HOH 19 396 396 HOH HOH F . N 3 HOH 20 398 398 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4090 ? 1 MORE -43 ? 1 'SSA (A^2)' 6080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-18 2 'Structure model' 1 1 2012-08-01 3 'Structure model' 1 2 2012-08-15 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 Blu-Ice . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 371 ? ? O A HOH 372 ? ? 1.95 2 1 NH2 D ARG 16 ? B O D HOH 317 ? ? 1.97 3 1 OG C SER 13 ? ? O C HOH 393 ? ? 2.07 4 1 O F HOH 374 ? ? O F HOH 379 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB B SER 20 ? ? OG B SER 20 ? ? 1.338 1.418 -0.080 0.013 N 2 1 CZ D ARG 16 ? B NH1 D ARG 16 ? B 1.241 1.326 -0.085 0.013 N 3 1 CA D SER 20 ? ? CB D SER 20 ? ? 1.619 1.525 0.094 0.015 N 4 1 CB D SER 20 ? ? OG D SER 20 ? ? 1.510 1.418 0.092 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 9 ? ? CG A ASP 9 ? ? OD1 A ASP 9 ? ? 112.72 118.30 -5.58 0.90 N 2 1 CB B ASP 1 ? ? CG B ASP 1 ? ? OD1 B ASP 1 ? ? 124.18 118.30 5.88 0.90 N 3 1 NE B ARG 16 ? ? CZ B ARG 16 ? ? NH1 B ARG 16 ? ? 125.58 120.30 5.28 0.50 N 4 1 NE B ARG 16 ? ? CZ B ARG 16 ? ? NH2 B ARG 16 ? ? 116.57 120.30 -3.73 0.50 N 5 1 CB C ASP 1 ? ? CG C ASP 1 ? ? OD2 C ASP 1 ? ? 109.88 118.30 -8.42 0.90 N 6 1 NE D ARG 16 ? B CZ D ARG 16 ? B NH1 D ARG 16 ? B 115.80 120.30 -4.50 0.50 N 7 1 CB F ASP 1 ? ? CG F ASP 1 ? ? OD1 F ASP 1 ? ? 125.15 118.30 6.85 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CL CL CL N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLY N N N N 78 GLY CA C N N 79 GLY C C N N 80 GLY O O N N 81 GLY OXT O N N 82 GLY H H N N 83 GLY H2 H N N 84 GLY HA2 H N N 85 GLY HA3 H N N 86 GLY HXT H N N 87 HOH O O N N 88 HOH H1 H N N 89 HOH H2 H N N 90 LEU N N N N 91 LEU CA C N S 92 LEU C C N N 93 LEU O O N N 94 LEU CB C N N 95 LEU CG C N N 96 LEU CD1 C N N 97 LEU CD2 C N N 98 LEU OXT O N N 99 LEU H H N N 100 LEU H2 H N N 101 LEU HA H N N 102 LEU HB2 H N N 103 LEU HB3 H N N 104 LEU HG H N N 105 LEU HD11 H N N 106 LEU HD12 H N N 107 LEU HD13 H N N 108 LEU HD21 H N N 109 LEU HD22 H N N 110 LEU HD23 H N N 111 LEU HXT H N N 112 PRO N N N N 113 PRO CA C N S 114 PRO C C N N 115 PRO O O N N 116 PRO CB C N N 117 PRO CG C N N 118 PRO CD C N N 119 PRO OXT O N N 120 PRO H H N N 121 PRO HA H N N 122 PRO HB2 H N N 123 PRO HB3 H N N 124 PRO HG2 H N N 125 PRO HG3 H N N 126 PRO HD2 H N N 127 PRO HD3 H N N 128 PRO HXT H N N 129 SER N N N N 130 SER CA C N S 131 SER C C N N 132 SER O O N N 133 SER CB C N N 134 SER OG O N N 135 SER OXT O N N 136 SER H H N N 137 SER H2 H N N 138 SER HA H N N 139 SER HB2 H N N 140 SER HB3 H N N 141 SER HG H N N 142 SER HXT H N N 143 TRP N N N N 144 TRP CA C N S 145 TRP C C N N 146 TRP O O N N 147 TRP CB C N N 148 TRP CG C Y N 149 TRP CD1 C Y N 150 TRP CD2 C Y N 151 TRP NE1 N Y N 152 TRP CE2 C Y N 153 TRP CE3 C Y N 154 TRP CZ2 C Y N 155 TRP CZ3 C Y N 156 TRP CH2 C Y N 157 TRP OXT O N N 158 TRP H H N N 159 TRP H2 H N N 160 TRP HA H N N 161 TRP HB2 H N N 162 TRP HB3 H N N 163 TRP HD1 H N N 164 TRP HE1 H N N 165 TRP HE3 H N N 166 TRP HZ2 H N N 167 TRP HZ3 H N N 168 TRP HH2 H N N 169 TRP HXT H N N 170 TYR N N N N 171 TYR CA C N S 172 TYR C C N N 173 TYR O O N N 174 TYR CB C N N 175 TYR CG C Y N 176 TYR CD1 C Y N 177 TYR CD2 C Y N 178 TYR CE1 C Y N 179 TYR CE2 C Y N 180 TYR CZ C Y N 181 TYR OH O N N 182 TYR OXT O N N 183 TYR H H N N 184 TYR H2 H N N 185 TYR HA H N N 186 TYR HB2 H N N 187 TYR HB3 H N N 188 TYR HD1 H N N 189 TYR HD2 H N N 190 TYR HE1 H N N 191 TYR HE2 H N N 192 TYR HH H N N 193 TYR HXT H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLY N CA sing N N 73 GLY N H sing N N 74 GLY N H2 sing N N 75 GLY CA C sing N N 76 GLY CA HA2 sing N N 77 GLY CA HA3 sing N N 78 GLY C O doub N N 79 GLY C OXT sing N N 80 GLY OXT HXT sing N N 81 HOH O H1 sing N N 82 HOH O H2 sing N N 83 LEU N CA sing N N 84 LEU N H sing N N 85 LEU N H2 sing N N 86 LEU CA C sing N N 87 LEU CA CB sing N N 88 LEU CA HA sing N N 89 LEU C O doub N N 90 LEU C OXT sing N N 91 LEU CB CG sing N N 92 LEU CB HB2 sing N N 93 LEU CB HB3 sing N N 94 LEU CG CD1 sing N N 95 LEU CG CD2 sing N N 96 LEU CG HG sing N N 97 LEU CD1 HD11 sing N N 98 LEU CD1 HD12 sing N N 99 LEU CD1 HD13 sing N N 100 LEU CD2 HD21 sing N N 101 LEU CD2 HD22 sing N N 102 LEU CD2 HD23 sing N N 103 LEU OXT HXT sing N N 104 PRO N CA sing N N 105 PRO N CD sing N N 106 PRO N H sing N N 107 PRO CA C sing N N 108 PRO CA CB sing N N 109 PRO CA HA sing N N 110 PRO C O doub N N 111 PRO C OXT sing N N 112 PRO CB CG sing N N 113 PRO CB HB2 sing N N 114 PRO CB HB3 sing N N 115 PRO CG CD sing N N 116 PRO CG HG2 sing N N 117 PRO CG HG3 sing N N 118 PRO CD HD2 sing N N 119 PRO CD HD3 sing N N 120 PRO OXT HXT sing N N 121 SER N CA sing N N 122 SER N H sing N N 123 SER N H2 sing N N 124 SER CA C sing N N 125 SER CA CB sing N N 126 SER CA HA sing N N 127 SER C O doub N N 128 SER C OXT sing N N 129 SER CB OG sing N N 130 SER CB HB2 sing N N 131 SER CB HB3 sing N N 132 SER OG HG sing N N 133 SER OXT HXT sing N N 134 TRP N CA sing N N 135 TRP N H sing N N 136 TRP N H2 sing N N 137 TRP CA C sing N N 138 TRP CA CB sing N N 139 TRP CA HA sing N N 140 TRP C O doub N N 141 TRP C OXT sing N N 142 TRP CB CG sing N N 143 TRP CB HB2 sing N N 144 TRP CB HB3 sing N N 145 TRP CG CD1 doub Y N 146 TRP CG CD2 sing Y N 147 TRP CD1 NE1 sing Y N 148 TRP CD1 HD1 sing N N 149 TRP CD2 CE2 doub Y N 150 TRP CD2 CE3 sing Y N 151 TRP NE1 CE2 sing Y N 152 TRP NE1 HE1 sing N N 153 TRP CE2 CZ2 sing Y N 154 TRP CE3 CZ3 doub Y N 155 TRP CE3 HE3 sing N N 156 TRP CZ2 CH2 doub Y N 157 TRP CZ2 HZ2 sing N N 158 TRP CZ3 CH2 sing Y N 159 TRP CZ3 HZ3 sing N N 160 TRP CH2 HH2 sing N N 161 TRP OXT HXT sing N N 162 TYR N CA sing N N 163 TYR N H sing N N 164 TYR N H2 sing N N 165 TYR CA C sing N N 166 TYR CA CB sing N N 167 TYR CA HA sing N N 168 TYR C O doub N N 169 TYR C OXT sing N N 170 TYR CB CG sing N N 171 TYR CB HB2 sing N N 172 TYR CB HB3 sing N N 173 TYR CG CD1 doub Y N 174 TYR CG CD2 sing Y N 175 TYR CD1 CE1 sing Y N 176 TYR CD1 HD1 sing N N 177 TYR CD2 CE2 doub Y N 178 TYR CD2 HD2 sing N N 179 TYR CE1 CZ doub Y N 180 TYR CE1 HE1 sing N N 181 TYR CE2 CZ sing Y N 182 TYR CE2 HE2 sing N N 183 TYR CZ OH sing N N 184 TYR OH HH sing N N 185 TYR OXT HXT sing N N 186 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2LL5 _pdbx_initial_refinement_model.details 'PDB ENTRY 2LL5' #